CircRNA Information

General Information
circRNA Basic Information
CircID chr3:50259034|50259185
Strand -
CircType exon
Host Gene ENSG00000114353.15;
Algorism CIRI2;
Sequence CCGTCCCTCTGCTGGCCGCCCCCGTGCGAGCGGCACCCCTGCCCTGCCCTCCACAGAATTGGGTTCCAAGGGCTGTTCCAGACAACTGCCAACGTCACTGAGGGCCCTGCCCCAGCGGCCCTGGCCCCAGGCTCTATTAACCTAAAATGTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:50259034|50259185 hsa-miR-34a-5p 0 0 1
chr3:50259034|50259185 hsa-miR-34a-3p 0 0 1
chr3:50259034|50259185 hsa-miR-154-5p 0 0 1
chr3:50259034|50259185 hsa-miR-154-3p 0 0 1
chr3:50259034|50259185 hsa-miR-449a 0 0 1
chr3:50259034|50259185 hsa-miR-632 0 0 1
chr3:50259034|50259185 hsa-miR-633 0 0 1
chr3:50259034|50259185 hsa-miR-661 0 1 1
chr3:50259034|50259185 hsa-miR-449b-5p 0 0 1
chr3:50259034|50259185 hsa-miR-449b-3p 0 0 1
chr3:50259034|50259185 hsa-miR-922 0 0 1
chr3:50259034|50259185 hsa-miR-1231 0 1 1
chr3:50259034|50259185 hsa-miR-1299 0 0 1
chr3:50259034|50259185 hsa-miR-1306-5p 0 0 1
chr3:50259034|50259185 hsa-miR-1306-3p 0 0 1
chr3:50259034|50259185 hsa-miR-486-3p 1 1 1
chr3:50259034|50259185 hsa-miR-875-3p 0 0 1
chr3:50259034|50259185 hsa-miR-1207-5p 1 1 1
chr3:50259034|50259185 hsa-miR-342-5p 0 0 1
chr3:50259034|50259185 hsa-miR-34c-5p 0 0 1
chr3:50259034|50259185 hsa-miR-129-3p 0 0 1
chr3:50259034|50259185 hsa-miR-608 1 0 0
chr3:50259034|50259185 hsa-miR-663a 1 0 0
chr3:50259034|50259185 hsa-miR-762 1 0 0
chr3:50259034|50259185 hsa-miR-940 1 1 0
chr3:50259034|50259185 hsa-miR-1294 1 0 0
chr3:50259034|50259185 hsa-miR-3196 1 0 0
chr3:50259034|50259185 hsa-miR-4327 1 1 0
chr3:50259034|50259185 hsa-miR-3918 0 1 0
chr3:50259034|50259185 hsa-miR-1268b 1 0 0
chr3:50259034|50259185 hsa-miR-4488 1 1 0
chr3:50259034|50259185 hsa-miR-3960 1 0 0
chr3:50259034|50259185 hsa-miR-4651 1 0 0
chr3:50259034|50259185 hsa-miR-4721 1 0 0
chr3:50259034|50259185 hsa-miR-4741 1 0 0
chr3:50259034|50259185 hsa-miR-5190 1 0 0
chr3:50259034|50259185 hsa-miR-5787 1 0 0
chr3:50259034|50259185 hsa-miR-6069 0 1 0
chr3:50259034|50259185 hsa-miR-6132 0 1 0
chr3:50259034|50259185 hsa-miR-8089 1 0 0
chr3:50259034|50259185 hsa-miR-504-3p 1 1 0
chr3:50259034|50259185 hsa-miR-1227-5p 0 1 0
chr3:50259034|50259185 hsa-miR-7114-5p 1 1 0
chr3:50259034|50259185 hsa-miR-6515-5p 0 1 0
chr3:50259034|50259185 hsa-miR-6089 1 0 0
chr3:50259034|50259185 hsa-miR-6880-5p 1 0 0
chr3:50259034|50259185 hsa-miR-7847-3p 0 1 0
chr3:50259034|50259185 hsa-miR-6727-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6721-5p 0 1 0
chr3:50259034|50259185 hsa-miR-3180-3p 1 1 0
chr3:50259034|50259185 hsa-miR-4697-3p 1 0 0
chr3:50259034|50259185 hsa-miR-6732-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6805-5p 1 1 0
chr3:50259034|50259185 hsa-miR-1226-5p 1 0 0
chr3:50259034|50259185 hsa-miR-1229-5p 1 0 0
chr3:50259034|50259185 hsa-miR-4640-5p 1 1 0
chr3:50259034|50259185 hsa-miR-1228-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6749-5p 1 0 0
chr3:50259034|50259185 hsa-miR-4787-5p 1 1 0
chr3:50259034|50259185 hsa-miR-6789-5p 1 0 0
chr3:50259034|50259185 hsa-miR-7112-5p 1 0 0
chr3:50259034|50259185 hsa-miR-7160-3p 0 1 0
chr3:50259034|50259185 hsa-miR-4750-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6869-3p 1 0 0
chr3:50259034|50259185 hsa-miR-6856-3p 0 1 0
chr3:50259034|50259185 hsa-miR-2277-5p 1 0 0
chr3:50259034|50259185 hsa-miR-10400-5p 1 0 0
chr3:50259034|50259185 hsa-miR-1233-5p 1 0 0
chr3:50259034|50259185 hsa-miR-4763-3p 1 1 0
chr3:50259034|50259185 hsa-miR-6787-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6816-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6775-5p 1 0 0
chr3:50259034|50259185 hsa-miR-3180 0 1 0
chr3:50259034|50259185 hsa-miR-6737-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6743-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6752-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6819-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6842-5p 1 0 0
chr3:50259034|50259185 hsa-miR-7110-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6722-3p 1 0 0
chr3:50259034|50259185 hsa-miR-6879-5p 1 1 0
chr3:50259034|50259185 hsa-miR-6836-5p 1 1 0
chr3:50259034|50259185 hsa-miR-10396b-5p 1 1 0
chr3:50259034|50259185 hsa-miR-1237-5p 1 1 0
chr3:50259034|50259185 hsa-miR-1909-3p 0 1 0
chr3:50259034|50259185 hsa-miR-328-5p 1 1 0
chr3:50259034|50259185 hsa-miR-4632-5p 1 1 0
chr3:50259034|50259185 hsa-miR-4649-5p 1 0 0
chr3:50259034|50259185 hsa-miR-4685-5p 1 1 0
chr3:50259034|50259185 hsa-miR-4726-5p 0 1 0
chr3:50259034|50259185 hsa-miR-4749-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6729-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6735-5p 0 1 0
chr3:50259034|50259185 hsa-miR-6858-5p 1 0 0
chr3:50259034|50259185 hsa-miR-4436b-3p 0 1 0
chr3:50259034|50259185 hsa-miR-4697-5p 1 1 0
chr3:50259034|50259185 hsa-miR-6845-5p 0 1 0
chr3:50259034|50259185 hsa-miR-4664-5p 0 1 0
chr3:50259034|50259185 hsa-miR-6791-5p 1 0 0
chr3:50259034|50259185 hsa-miR-6762-5p 1 1 0
chr3:50259034|50259185 hsa-miR-6837-5p 0 1 0
chr3:50259034|50259185 hsa-miR-129-1-3p 0 1 0
chr3:50259034|50259185 hsa-miR-129-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:50259034|50259185
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MFQTTANVTEGPAPAALAPGSINLKC
Nucleotide Sequence CTGTTCCAGACAACTGCCAACGTCACTGAGGGCCCTGCCCCAGCGGCCCTGGCCCCAGGCTCTATTAACCTAAAATGT
CircID chr3:50259034|50259185
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MPSTELGSKGCSRQLPTSLRALPQRPWPQALLT
Nucleotide Sequence CTGCCCTCCACAGAATTGGGTTCCAAGGGCTGTTCCAGACAACTGCCAACGTCACTGAGGGCCCTGCCCCAGCGGCCCTGGCCCCAGGCTCTATTAACCTAA
CircID chr3:50259034|50259185
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MLAAPVRAAPLPCPPQNWVPRAVPDNCQRH
Nucleotide Sequence CTGCTGGCCGCCCCCGTGCGAGCGGCACCCCTGCCCTGCCCTCCACAGAATTGGGTTCCAAGGGCTGTTCCAGACAACTGCCAACGTCACTGA
CircID chr3:50259034|50259185
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MAVVWNSPWNPILWRAGQGCRSHGGGQQRD
Nucleotide Sequence TTGGCAGTTGTCTGGAACAGCCCTTGGAACCCAATTCTGTGGAGGGCAGGGCAGGGGTGCCGCTCGCACGGGGGCGGCCAGCAGAGGGAC
CircID chr3:50259034|50259185
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MSGTALGTQFCGGQGRGAARTGAASRGT
Nucleotide Sequence TTGTCTGGAACAGCCCTTGGAACCCAATTCTGTGGAGGGCAGGGCAGGGGTGCCGCTCGCACGGGGGCGGCCAGCAGAGGGACG
CircID chr3:50259034|50259185
ORF Type ORF6
Protein Length 27
Nucleotide Length 81
Protein Sequence MEQPLEPNSVEGRAGVPLARGRPAEGR
Nucleotide Sequence CTGGAACAGCCCTTGGAACCCAATTCTGTGGAGGGCAGGGCAGGGGTGCCGCTCGCACGGGGGCGGCCAGCAGAGGGACGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab