CircRNA Information

General Information
circRNA Basic Information
CircID chr3:50289712|50290012
Strand -
CircType exon
Host Gene ENSG00000214706.9;
Algorism CIRI2;
Sequence CTGGATGTCAGCGGCAGCCACGTAGCAGCCCAGGCCAAGGGCAGAAGCACACTGTTGGGAGAAGGGCAATGCAATGCCACGGTCAGCGGGTGAACCTGGGTTCCCAGCCCTGGAGCTCACTCCCCTCAGAGTAAAGGAGGCTGAAGATAGGGGGAACCCACCACTCTGCTGAGGGATAAGGTGCAGGAAGGGTTTCATGGGGCACAGGCACACTCACGTGGAGCCGGGCAGCAGGGCTAGCTGTGCTGTCACTGAGCACAGAGACCAGCAGAGGCTGCAGGCTGTGAAACAGCTCCTCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:50289712|50290012 hsa-miR-27a-5p 0 0 1
chr3:50289712|50290012 hsa-miR-27a-3p 0 0 1
chr3:50289712|50290012 hsa-miR-33a-5p 0 0 1
chr3:50289712|50290012 hsa-miR-33a-3p 0 0 1
chr3:50289712|50290012 hsa-miR-214-5p 0 0 1
chr3:50289712|50290012 hsa-miR-214-3p 0 0 1
chr3:50289712|50290012 hsa-miR-27b-5p 0 0 1
chr3:50289712|50290012 hsa-miR-27b-3p 0 0 1
chr3:50289712|50290012 hsa-miR-150-5p 0 0 1
chr3:50289712|50290012 hsa-miR-150-3p 0 0 1
chr3:50289712|50290012 hsa-miR-370-5p 0 0 1
chr3:50289712|50290012 hsa-miR-370-3p 0 0 1
chr3:50289712|50290012 hsa-miR-489-5p 0 0 1
chr3:50289712|50290012 hsa-miR-489-3p 0 0 1
chr3:50289712|50290012 hsa-miR-593-5p 0 0 1
chr3:50289712|50290012 hsa-miR-593-3p 0 0 1
chr3:50289712|50290012 hsa-miR-596 0 0 1
chr3:50289712|50290012 hsa-miR-604 0 0 1
chr3:50289712|50290012 hsa-miR-33b-5p 0 0 1
chr3:50289712|50290012 hsa-miR-33b-3p 0 0 1
chr3:50289712|50290012 hsa-miR-636 0 0 1
chr3:50289712|50290012 hsa-miR-647 0 1 1
chr3:50289712|50290012 hsa-miR-648 0 0 1
chr3:50289712|50290012 hsa-miR-661 1 1 1
chr3:50289712|50290012 hsa-miR-874-5p 0 0 1
chr3:50289712|50290012 hsa-miR-874-3p 0 0 1
chr3:50289712|50290012 hsa-miR-541-5p 0 0 1
chr3:50289712|50290012 hsa-miR-541-3p 0 0 1
chr3:50289712|50290012 hsa-miR-708-5p 0 0 1
chr3:50289712|50290012 hsa-miR-708-3p 0 0 1
chr3:50289712|50290012 hsa-miR-922 0 0 1
chr3:50289712|50290012 hsa-miR-938 0 0 1
chr3:50289712|50290012 hsa-miR-1256 0 0 1
chr3:50289712|50290012 hsa-miR-1292-5p 0 0 1
chr3:50289712|50290012 hsa-miR-1292-3p 0 0 1
chr3:50289712|50290012 hsa-miR-532-3p 0 0 1
chr3:50289712|50290012 hsa-miR-1184 0 1 1
chr3:50289712|50290012 hsa-miR-574-5p 0 1 1
chr3:50289712|50290012 hsa-miR-423-5p 0 0 1
chr3:50289712|50290012 hsa-miR-654-5p 0 0 1
chr3:50289712|50290012 hsa-miR-28-5p 0 1 1
chr3:50289712|50290012 hsa-miR-188-5p 0 1 1
chr3:50289712|50290012 hsa-miR-513a-5p 0 0 1
chr3:50289712|50290012 hsa-miR-324-3p 0 0 1
chr3:50289712|50290012 hsa-miR-542-3p 0 0 1
chr3:50289712|50290012 hsa-miR-550 0 0 1
chr3:50289712|50290012 hsa-miR-138 0 0 1
chr3:50289712|50290012 hsa-miR-218 0 0 1
chr3:50289712|50290012 hsa-miR-129-3p 0 0 1
chr3:50289712|50290012 hsa-miR-762 0 1 0
chr3:50289712|50290012 hsa-miR-1248 0 1 0
chr3:50289712|50290012 hsa-miR-1538 1 0 0
chr3:50289712|50290012 hsa-miR-1913 1 0 0
chr3:50289712|50290012 hsa-miR-3139 0 1 0
chr3:50289712|50290012 hsa-miR-4492 0 1 0
chr3:50289712|50290012 hsa-miR-4498 0 1 0
chr3:50289712|50290012 hsa-miR-4526 0 1 0
chr3:50289712|50290012 hsa-miR-1587 0 1 0
chr3:50289712|50290012 hsa-miR-4686 0 1 0
chr3:50289712|50290012 hsa-miR-4721 1 0 0
chr3:50289712|50290012 hsa-miR-5190 0 1 0
chr3:50289712|50290012 hsa-miR-5787 0 1 0
chr3:50289712|50290012 hsa-miR-8077 1 0 0
chr3:50289712|50290012 hsa-miR-12119 0 1 0
chr3:50289712|50290012 hsa-miR-132-5p 0 1 0
chr3:50289712|50290012 hsa-miR-92a-2-5p 0 1 0
chr3:50289712|50290012 hsa-miR-6734-5p 0 1 0
chr3:50289712|50290012 hsa-miR-3194-3p 1 1 0
chr3:50289712|50290012 hsa-miR-6879-3p 1 0 0
chr3:50289712|50290012 hsa-miR-4665-3p 1 0 0
chr3:50289712|50290012 hsa-miR-4726-3p 1 1 0
chr3:50289712|50290012 hsa-miR-212-5p 0 1 0
chr3:50289712|50290012 hsa-miR-6822-3p 0 1 0
chr3:50289712|50290012 hsa-miR-3692-5p 0 1 0
chr3:50289712|50290012 hsa-miR-3189-5p 1 0 0
chr3:50289712|50290012 hsa-miR-3663-5p 0 1 0
chr3:50289712|50290012 hsa-miR-6728-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6735-3p 1 0 0
chr3:50289712|50290012 hsa-miR-939-3p 0 1 0
chr3:50289712|50290012 hsa-miR-2277-3p 1 0 0
chr3:50289712|50290012 hsa-miR-3679-3p 0 1 0
chr3:50289712|50290012 hsa-miR-3667-3p 0 1 0
chr3:50289712|50290012 hsa-miR-7156-3p 0 1 0
chr3:50289712|50290012 hsa-miR-7843-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6825-3p 1 0 0
chr3:50289712|50290012 hsa-miR-1236-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6811-3p 1 1 0
chr3:50289712|50290012 hsa-miR-6889-3p 0 1 0
chr3:50289712|50290012 hsa-miR-1180-3p 1 0 0
chr3:50289712|50290012 hsa-miR-4758-3p 1 0 0
chr3:50289712|50290012 hsa-miR-629-3p 0 1 0
chr3:50289712|50290012 hsa-miR-1914-5p 1 1 0
chr3:50289712|50290012 hsa-miR-6886-3p 1 1 0
chr3:50289712|50290012 hsa-miR-5088-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6883-3p 0 1 0
chr3:50289712|50290012 hsa-miR-4750-3p 1 0 0
chr3:50289712|50290012 hsa-miR-3173-5p 0 1 0
chr3:50289712|50290012 hsa-miR-4709-5p 0 1 0
chr3:50289712|50290012 hsa-miR-6769b-5p 1 0 0
chr3:50289712|50290012 hsa-miR-5001-5p 0 1 0
chr3:50289712|50290012 hsa-miR-6813-5p 1 0 0
chr3:50289712|50290012 hsa-miR-320a-5p 0 1 0
chr3:50289712|50290012 hsa-miR-3620-5p 1 1 0
chr3:50289712|50290012 hsa-miR-4685-5p 0 1 0
chr3:50289712|50290012 hsa-miR-4745-5p 0 1 0
chr3:50289712|50290012 hsa-miR-3187-5p 1 0 0
chr3:50289712|50290012 hsa-miR-939-5p 1 0 0
chr3:50289712|50290012 hsa-miR-6799-3p 0 1 0
chr3:50289712|50290012 hsa-miR-5008-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6791-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6877-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6790-5p 0 1 0
chr3:50289712|50290012 hsa-miR-6893-3p 0 1 0
chr3:50289712|50290012 hsa-miR-4757-5p 1 0 0
chr3:50289712|50290012 hsa-miR-6810-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6775-3p 1 0 0
chr3:50289712|50290012 hsa-miR-125a-5p 1 0 0
chr3:50289712|50290012 hsa-miR-6529-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6848-3p 0 1 0
chr3:50289712|50290012 hsa-miR-6876-3p 1 0 0
chr3:50289712|50290012 hsa-miR-6843-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:50289712|50290012
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence LDVSGSHVAAQAKGRSTLLGEGQCNATVSG
Nucleotide Sequence CTGGATGTCAGCGGCAGCCACGTAGCAGCCCAGGCCAAGGGCAGAAGCACACTGTTGGGAGAAGGGCAATGCAATGCCACGGTCAGCGGGTGA
CircID chr3:50289712|50290012
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MPRSAGEPGFPALELTPLRVKEAEDRGNPPLC
Nucleotide Sequence ATGCCACGGTCAGCGGGTGAACCTGGGTTCCCAGCCCTGGAGCTCACTCCCCTCAGAGTAAAGGAGGCTGAAGATAGGGGGAACCCACCACTCTGCTGA
CircID chr3:50289712|50290012
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MGHRHTHVEPGSRASCAVTEHRDQQRLQAVKQLLT
Nucleotide Sequence ATGGGGCACAGGCACACTCACGTGGAGCCGGGCAGCAGGGCTAGCTGTGCTGTCACTGAGCACAGAGACCAGCAGAGGCTGCAGGCTGTGAAACAGCTCCTCACC
CircID chr3:50289712|50290012
ORF Type ORF4
Protein Length 69
Nucleotide Length 210
Protein Sequence MFHSLQPLLVSVLSDSTASPAARLHVSVPVPHETLPAPYPSAEWWVPPIFSLLYSEGSELQGWEPRFTR
Nucleotide Sequence CTGTTTCACAGCCTGCAGCCTCTGCTGGTCTCTGTGCTCAGTGACAGCACAGCTAGCCCTGCTGCCCGGCTCCACGTGAGTGTGCCTGTGCCCCATGAAACCCTTCCTGCACCTTATCCCTCAGCAGAGTGGTGGGTTCCCCCTATCTTCAGCCTCCTTTACTCTGAGGGGAGTGAGCTCCAGGGCTGGGAACCCAGGTTCACCCGCTGA
CircID chr3:50289712|50290012
ORF Type ORF5
Protein Length 69
Nucleotide Length 207
Protein Sequence MCPMKPFLHLIPQQSGGFPLSSASFTLRGVSSRAGNPGSPADRGIALPFSQQCASALGLGCYVAAADIQ
Nucleotide Sequence CTGTGCCCCATGAAACCCTTCCTGCACCTTATCCCTCAGCAGAGTGGTGGGTTCCCCCTATCTTCAGCCTCCTTTACTCTGAGGGGAGTGAGCTCCAGGGCTGGGAACCCAGGTTCACCCGCTGACCGTGGCATTGCATTGCCCTTCTCCCAACAGTGTGCTTCTGCCCTTGGCCTGGGCTGCTACGTGGCTGCCGCTGACATCCAG
CircID chr3:50289712|50290012
ORF Type ORF6
Protein Length 35
Nucleotide Length 105
Protein Sequence MGTQVHPLTVALHCPSPNSVLLPLAWAATWLPLTS
Nucleotide Sequence CTGGGAACCCAGGTTCACCCGCTGACCGTGGCATTGCATTGCCCTTCTCCCAACAGTGTGCTTCTGCCCTTGGCCTGGGCTGCTACGTGGCTGCCGCTGACATCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab