CircRNA Information

General Information
circRNA Basic Information
CircID chr3:50318291|50318465
Strand +
CircType exon
Host Gene ENSG00000068001.12;
Algorism CIRI2;
Sequence CCAATATTGCAGCCGGGCCCAGTGCCATGGCCATGGGCGCTGTGTGCGCCGCAACCCCAGTGCCAGTACCTTCCTGCATCTCAGCACCAACAGTTTCCGCCTAGTGCCTGGCCATGCACCTGGTGAACCCCAGCTGCGACCTGTGGGGGAGCTCAGTTGGGCCGACATTGACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:50318291|50318465 hsa-miR-197-5p 0 0 1
chr3:50318291|50318465 hsa-miR-197-3p 0 0 1
chr3:50318291|50318465 hsa-miR-183-5p 0 0 1
chr3:50318291|50318465 hsa-miR-183-3p 0 0 1
chr3:50318291|50318465 hsa-miR-143-5p 0 0 1
chr3:50318291|50318465 hsa-miR-143-3p 0 0 1
chr3:50318291|50318465 hsa-miR-193b-5p 0 0 1
chr3:50318291|50318465 hsa-miR-193b-3p 0 0 1
chr3:50318291|50318465 hsa-miR-892b 0 0 1
chr3:50318291|50318465 hsa-miR-1226-5p 0 0 1
chr3:50318291|50318465 hsa-miR-1226-3p 0 0 1
chr3:50318291|50318465 hsa-miR-1286 0 0 1
chr3:50318291|50318465 hsa-miR-548g-5p 0 0 1
chr3:50318291|50318465 hsa-miR-548g-3p 0 0 1
chr3:50318291|50318465 hsa-miR-296-5p 0 0 1
chr3:50318291|50318465 hsa-miR-361-3p 0 0 1
chr3:50318291|50318465 hsa-miR-1207-3p 0 0 1
chr3:50318291|50318465 hsa-miR-193a-3p 0 0 1
chr3:50318291|50318465 hsa-miR-663a 1 0 0
chr3:50318291|50318465 hsa-miR-762 1 0 0
chr3:50318291|50318465 hsa-miR-765 1 0 0
chr3:50318291|50318465 hsa-miR-760 1 0 0
chr3:50318291|50318465 hsa-miR-1183 1 0 0
chr3:50318291|50318465 hsa-miR-3195 1 0 0
chr3:50318291|50318465 hsa-miR-3197 1 0 0
chr3:50318291|50318465 hsa-miR-3665 1 0 0
chr3:50318291|50318465 hsa-miR-3907 1 0 0
chr3:50318291|50318465 hsa-miR-4486 1 0 0
chr3:50318291|50318465 hsa-miR-4489 1 0 0
chr3:50318291|50318465 hsa-miR-4496 1 0 0
chr3:50318291|50318465 hsa-miR-4533 1 0 0
chr3:50318291|50318465 hsa-miR-4656 1 0 0
chr3:50318291|50318465 hsa-miR-4657 1 0 0
chr3:50318291|50318465 hsa-miR-4739 1 0 0
chr3:50318291|50318465 hsa-miR-6088 1 0 0
chr3:50318291|50318465 hsa-miR-6860 1 0 0
chr3:50318291|50318465 hsa-miR-9901 1 0 0
chr3:50318291|50318465 hsa-miR-12114 1 0 0
chr3:50318291|50318465 hsa-miR-4665-3p 1 0 0
chr3:50318291|50318465 hsa-miR-6765-5p 1 0 0
chr3:50318291|50318465 hsa-miR-25-5p 1 0 0
chr3:50318291|50318465 hsa-miR-3692-5p 1 0 0
chr3:50318291|50318465 hsa-miR-3192-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6880-5p 1 0 0
chr3:50318291|50318465 hsa-miR-4722-5p 1 0 0
chr3:50318291|50318465 hsa-miR-7160-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6741-5p 1 0 0
chr3:50318291|50318465 hsa-miR-3187-3p 1 0 0
chr3:50318291|50318465 hsa-miR-6821-5p 1 0 0
chr3:50318291|50318465 hsa-miR-4640-5p 1 0 0
chr3:50318291|50318465 hsa-miR-1228-5p 1 0 0
chr3:50318291|50318465 hsa-miR-4783-5p 1 0 0
chr3:50318291|50318465 hsa-miR-149-3p 1 0 0
chr3:50318291|50318465 hsa-miR-1250-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6857-3p 1 0 0
chr3:50318291|50318465 hsa-miR-1207-5p 1 0 0
chr3:50318291|50318465 hsa-miR-4763-3p 1 0 0
chr3:50318291|50318465 hsa-miR-6870-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6743-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6754-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6722-3p 1 0 0
chr3:50318291|50318465 hsa-miR-6797-5p 1 0 0
chr3:50318291|50318465 hsa-miR-5196-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6780b-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6836-5p 1 0 0
chr3:50318291|50318465 hsa-miR-675-5p 1 0 0
chr3:50318291|50318465 hsa-miR-4769-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6511a-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6511b-5p 1 0 0
chr3:50318291|50318465 hsa-miR-6855-5p 1 0 0
chr3:50318291|50318465 hsa-miR-9851-5p 1 0 0
chr3:50318291|50318465 hsa-miR-9851-3p 1 0 0
chr3:50318291|50318465 hsa-miR-6811-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:50318291|50318465
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MQPGPVPWPWALCAPQPQCQYLPASQHQQFPPSAWPCTW
Nucleotide Sequence TTGCAGCCGGGCCCAGTGCCATGGCCATGGGCGCTGTGTGCGCCGCAACCCCAGTGCCAGTACCTTCCTGCATCTCAGCACCAACAGTTTCCGCCTAGTGCCTGGCCATGCACCTGGTGA
CircID chr3:50318291|50318465
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MHLSTNSFRLVPGHAPGEPQLRPVGELSWADIDH
Nucleotide Sequence CTGCATCTCAGCACCAACAGTTTCCGCCTAGTGCCTGGCCATGCACCTGGTGAACCCCAGCTGCGACCTGTGGGGGAGCTCAGTTGGGCCGACATTGACCAC
CircID chr3:50318291|50318465
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MAMGAVCAATPVPVPSCISAPTVSA
Nucleotide Sequence ATGGCCATGGGCGCTGTGTGCGCCGCAACCCCAGTGCCAGTACCTTCCTGCATCTCAGCACCAACAGTTTCCGCCTAG
CircID chr3:50318291|50318465
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MQEGTGTGVAAHTAPMAMALGPAAIL
Nucleotide Sequence ATGCAGGAAGGTACTGGCACTGGGGTTGCGGCGCACACAGCGCCCATGGCCATGGCACTGGGCCCGGCTGCAATATTG
CircID chr3:50318291|50318465
ORF Type ORF5
Protein Length 56
Nucleotide Length 168
Protein Sequence MSAQLSSPTGRSWGSPGAWPGTRRKLLVLRCRKVLALGLRRTQRPWPWHWARLQYW
Nucleotide Sequence ATGTCGGCCCAACTGAGCTCCCCCACAGGTCGCAGCTGGGGTTCACCAGGTGCATGGCCAGGCACTAGGCGGAAACTGTTGGTGCTGAGATGCAGGAAGGTACTGGCACTGGGGTTGCGGCGCACACAGCGCCCATGGCCATGGCACTGGGCCCGGCTGCAATATTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab