CircRNA Information

General Information
circRNA Basic Information
CircID chr3:50358213|50358417
Strand -
CircType exon
Host Gene ENSG00000114395.9;
Algorism CIRI2;
Sequence CTTCTCCGCTCGGCGTCTTGAGGGTCTGTGCCTGGCAGGCTGATGGTGATGGAGGATGGGGCACCCACATCGTAGCGCTTCACCGTCTTCTGGCATATCTTTACCTTCACCAGGAGGCTGTGCACCAAGTTCGCCAGCAAACCCACCACAGGCTGCAGGATCTCAGGGAAGAAAGTGGCGAAAGCAAAGTGGTCAGCCATGTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:50358213|50358417 hsa-miR-493-5p 0 0 1
chr3:50358213|50358417 hsa-miR-493-3p 0 0 1
chr3:50358213|50358417 hsa-miR-518e-5p 0 0 1
chr3:50358213|50358417 hsa-miR-518e-3p 0 0 1
chr3:50358213|50358417 hsa-miR-596 1 1 1
chr3:50358213|50358417 hsa-miR-629-5p 0 0 1
chr3:50358213|50358417 hsa-miR-629-3p 0 0 1
chr3:50358213|50358417 hsa-miR-541-5p 0 0 1
chr3:50358213|50358417 hsa-miR-541-3p 0 0 1
chr3:50358213|50358417 hsa-miR-299-3p 0 0 1
chr3:50358213|50358417 hsa-miR-1184 1 1 1
chr3:50358213|50358417 hsa-miR-654-5p 1 0 1
chr3:50358213|50358417 hsa-miR-125a-5p 1 1 1
chr3:50358213|50358417 hsa-miR-1274a 0 0 1
chr3:50358213|50358417 hsa-miR-125b 0 0 1
chr3:50358213|50358417 hsa-miR-1200 1 0 0
chr3:50358213|50358417 hsa-miR-3137 1 0 0
chr3:50358213|50358417 hsa-miR-3197 1 0 0
chr3:50358213|50358417 hsa-miR-4324 0 1 0
chr3:50358213|50358417 hsa-miR-4269 1 1 0
chr3:50358213|50358417 hsa-miR-3939 1 0 0
chr3:50358213|50358417 hsa-miR-4432 1 0 0
chr3:50358213|50358417 hsa-miR-4440 1 0 0
chr3:50358213|50358417 hsa-miR-4647 0 1 0
chr3:50358213|50358417 hsa-miR-4651 1 0 0
chr3:50358213|50358417 hsa-miR-4682 1 1 0
chr3:50358213|50358417 hsa-miR-4734 1 0 0
chr3:50358213|50358417 hsa-miR-7706 0 1 0
chr3:50358213|50358417 hsa-miR-150-3p 1 0 0
chr3:50358213|50358417 hsa-miR-6840-3p 1 0 0
chr3:50358213|50358417 hsa-miR-6765-5p 1 1 0
chr3:50358213|50358417 hsa-miR-766-3p 1 0 0
chr3:50358213|50358417 hsa-miR-181c-3p 1 0 0
chr3:50358213|50358417 hsa-miR-3622a-5p 0 1 0
chr3:50358213|50358417 hsa-miR-6880-5p 1 0 0
chr3:50358213|50358417 hsa-miR-7160-5p 1 0 0
chr3:50358213|50358417 hsa-miR-6849-3p 1 0 0
chr3:50358213|50358417 hsa-miR-6793-5p 1 0 0
chr3:50358213|50358417 hsa-miR-4725-5p 1 0 0
chr3:50358213|50358417 hsa-miR-5008-5p 1 0 0
chr3:50358213|50358417 hsa-miR-5006-5p 0 1 0
chr3:50358213|50358417 hsa-miR-6882-3p 1 0 0
chr3:50358213|50358417 hsa-miR-6788-3p 1 1 0
chr3:50358213|50358417 hsa-miR-6884-3p 0 1 0
chr3:50358213|50358417 hsa-miR-6847-5p 1 1 0
chr3:50358213|50358417 hsa-miR-5196-3p 0 1 0
chr3:50358213|50358417 hsa-miR-7156-3p 1 0 0
chr3:50358213|50358417 hsa-miR-6870-3p 0 1 0
chr3:50358213|50358417 hsa-miR-660-3p 0 1 0
chr3:50358213|50358417 hsa-miR-6767-5p 1 0 0
chr3:50358213|50358417 hsa-miR-1255b-2-3p 0 1 0
chr3:50358213|50358417 hsa-miR-670-5p 1 1 0
chr3:50358213|50358417 hsa-let-7a-2-3p 0 1 0
chr3:50358213|50358417 hsa-miR-885-5p 0 1 0
chr3:50358213|50358417 hsa-miR-6769b-5p 1 1 0
chr3:50358213|50358417 hsa-miR-6769a-5p 1 1 0
chr3:50358213|50358417 hsa-miR-4726-5p 1 0 0
chr3:50358213|50358417 hsa-miR-6831-5p 0 1 0
chr3:50358213|50358417 hsa-miR-3940-5p 1 0 0
chr3:50358213|50358417 hsa-miR-6791-5p 1 0 0
chr3:50358213|50358417 hsa-miR-4722-3p 0 1 0
chr3:50358213|50358417 hsa-miR-6792-3p 0 1 0
chr3:50358213|50358417 hsa-miR-10394-5p 1 0 0
chr3:50358213|50358417 hsa-miR-4691-5p 0 1 0
chr3:50358213|50358417 hsa-miR-373-3p 0 1 0
chr3:50358213|50358417 hsa-miR-125b-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:50358213|50358417
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MCTKFASKPTTGCRISGKKVAKAKWSAMS
Nucleotide Sequence CTGTGCACCAAGTTCGCCAGCAAACCCACCACAGGCTGCAGGATCTCAGGGAAGAAAGTGGCGAAAGCAAAGTGGTCAGCCATGTCC
CircID chr3:50358213|50358417
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MGHPHRSASPSSGISLPSPGGCAPSSPANPPQAAGSQGRKWRKQSGQPCP
Nucleotide Sequence ATGGGGCACCCACATCGTAGCGCTTCACCGTCTTCTGGCATATCTTTACCTTCACCAGGAGGCTGTGCACCAAGTTCGCCAGCAAACCCACCACAGGCTGCAGGATCTCAGGGAAGAAAGTGGCGAAAGCAAAGTGGTCAGCCATGTCCC
CircID chr3:50358213|50358417
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MRVCAWQADGDGGWGTHIVALHRLLAYLYLHQEAVHQVRQQTHHRLQDLREESGESKVVSHV
Nucleotide Sequence TTGAGGGTCTGTGCCTGGCAGGCTGATGGTGATGGAGGATGGGGCACCCACATCGTAGCGCTTCACCGTCTTCTGGCATATCTTTACCTTCACCAGGAGGCTGTGCACCAAGTTCGCCAGCAAACCCACCACAGGCTGCAGGATCTCAGGGAAGAAAGTGGCGAAAGCAAAGTGGTCAGCCATGTC
CircID chr3:50358213|50358417
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MTTLLSPLSSLRSCSLWWVCWRTWCTASW
Nucleotide Sequence CTGACCACTTTGCTTTCGCCACTTTCTTCCCTGAGATCCTGCAGCCTGTGGTGGGTTTGCTGGCGAACTTGGTGCACAGCCTCCTGGTGA
CircID chr3:50358213|50358417
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MPEDGEALRCGCPILHHHQPARHRPSRRRAEK
Nucleotide Sequence ATGCCAGAAGACGGTGAAGCGCTACGATGTGGGTGCCCCATCCTCCATCACCATCAGCCTGCCAGGCACAGACCCTCAAGACGCCGAGCGGAGAAG
CircID chr3:50358213|50358417
ORF Type ORF6
Protein Length 66
Nucleotide Length 198
Protein Sequence MADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERR
Nucleotide Sequence ATGGCTGACCACTTTGCTTTCGCCACTTTCTTCCCTGAGATCCTGCAGCCTGTGGTGGGTTTGCTGGCGAACTTGGTGCACAGCCTCCTGGTGAAGGTAAAGATATGCCAGAAGACGGTGAAGCGCTACGATGTGGGTGCCCCATCCTCCATCACCATCAGCCTGCCAGGCACAGACCCTCAAGACGCCGAGCGGAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab