CircRNA Information

General Information
circRNA Basic Information
CircID chr3:50563543|50563698
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCCCACCACTGATCCTGGTCTGCCTGTACCAAGCACTTTTCCTTCCTGGGTAAGGCAGAAAGCCTGGTGCAGATTTGCTCCTCCTTGTACCCACGGCCCTGCTTGAGGCTGGCATCGGGGAGAGGAAGCAGCACTCAGTGAGCACCTCTGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:50563543|50563698 hsa-miR-17-5p 0 0 1
chr3:50563543|50563698 hsa-miR-17-3p 0 0 1
chr3:50563543|50563698 hsa-miR-20a-5p 0 0 1
chr3:50563543|50563698 hsa-miR-20a-3p 0 0 1
chr3:50563543|50563698 hsa-miR-93-5p 0 0 1
chr3:50563543|50563698 hsa-miR-93-3p 0 0 1
chr3:50563543|50563698 hsa-miR-106a-5p 0 0 1
chr3:50563543|50563698 hsa-miR-106a-3p 0 0 1
chr3:50563543|50563698 hsa-miR-106b-5p 0 0 1
chr3:50563543|50563698 hsa-miR-106b-3p 0 0 1
chr3:50563543|50563698 hsa-miR-302a-5p 0 0 1
chr3:50563543|50563698 hsa-miR-302a-3p 0 0 1
chr3:50563543|50563698 hsa-miR-302b-5p 0 0 1
chr3:50563543|50563698 hsa-miR-302b-3p 0 0 1
chr3:50563543|50563698 hsa-miR-302c-5p 0 0 1
chr3:50563543|50563698 hsa-miR-302c-3p 0 0 1
chr3:50563543|50563698 hsa-miR-302d-5p 0 0 1
chr3:50563543|50563698 hsa-miR-302d-3p 0 0 1
chr3:50563543|50563698 hsa-miR-372-5p 0 0 1
chr3:50563543|50563698 hsa-miR-372-3p 0 0 1
chr3:50563543|50563698 hsa-miR-373-5p 0 0 1
chr3:50563543|50563698 hsa-miR-373-3p 0 0 1
chr3:50563543|50563698 hsa-miR-20b-5p 0 0 1
chr3:50563543|50563698 hsa-miR-20b-3p 0 0 1
chr3:50563543|50563698 hsa-miR-520e-5p 0 0 1
chr3:50563543|50563698 hsa-miR-520e-3p 0 0 1
chr3:50563543|50563698 hsa-miR-520f-5p 0 0 1
chr3:50563543|50563698 hsa-miR-520f-3p 0 0 1
chr3:50563543|50563698 hsa-miR-520b-5p 0 0 1
chr3:50563543|50563698 hsa-miR-520b-3p 0 0 1
chr3:50563543|50563698 hsa-miR-519d-5p 0 0 1
chr3:50563543|50563698 hsa-miR-519d-3p 0 0 1
chr3:50563543|50563698 hsa-miR-624-5p 0 0 1
chr3:50563543|50563698 hsa-miR-624-3p 0 0 1
chr3:50563543|50563698 hsa-miR-625-5p 0 0 1
chr3:50563543|50563698 hsa-miR-625-3p 0 0 1
chr3:50563543|50563698 hsa-miR-636 0 0 1
chr3:50563543|50563698 hsa-miR-765 0 0 1
chr3:50563543|50563698 hsa-miR-541-5p 0 0 1
chr3:50563543|50563698 hsa-miR-541-3p 0 0 1
chr3:50563543|50563698 hsa-miR-1178-5p 0 0 1
chr3:50563543|50563698 hsa-miR-1178-3p 0 0 1
chr3:50563543|50563698 hsa-miR-1202 1 1 1
chr3:50563543|50563698 hsa-miR-1263 0 0 1
chr3:50563543|50563698 hsa-miR-1275 0 0 1
chr3:50563543|50563698 hsa-miR-302e 0 0 1
chr3:50563543|50563698 hsa-miR-1252-5p 0 0 1
chr3:50563543|50563698 hsa-miR-1252-3p 0 0 1
chr3:50563543|50563698 hsa-miR-512-3p 0 0 1
chr3:50563543|50563698 hsa-miR-767-5p 0 0 1
chr3:50563543|50563698 hsa-miR-1225-5p 0 0 1
chr3:50563543|50563698 hsa-miR-654-5p 0 0 1
chr3:50563543|50563698 hsa-miR-520d-3p 0 0 1
chr3:50563543|50563698 hsa-miR-520a-3p 0 0 1
chr3:50563543|50563698 hsa-miR-520c-3p 0 0 1
chr3:50563543|50563698 hsa-miR-516a-3p 0 1 1
chr3:50563543|50563698 hsa-miR-544 0 0 1
chr3:50563543|50563698 hsa-miR-764 0 1 0
chr3:50563543|50563698 hsa-miR-4257 0 1 0
chr3:50563543|50563698 hsa-miR-3918 0 1 0
chr3:50563543|50563698 hsa-miR-3937 1 0 0
chr3:50563543|50563698 hsa-miR-4436a 1 0 0
chr3:50563543|50563698 hsa-miR-4476 1 1 0
chr3:50563543|50563698 hsa-miR-4514 0 1 0
chr3:50563543|50563698 hsa-miR-3972 1 1 0
chr3:50563543|50563698 hsa-miR-4692 1 1 0
chr3:50563543|50563698 hsa-miR-4739 1 0 0
chr3:50563543|50563698 hsa-miR-4754 1 0 0
chr3:50563543|50563698 hsa-miR-6075 1 0 0
chr3:50563543|50563698 hsa-miR-6081 1 0 0
chr3:50563543|50563698 hsa-miR-6132 0 1 0
chr3:50563543|50563698 hsa-miR-12118 0 1 0
chr3:50563543|50563698 hsa-miR-150-3p 1 1 0
chr3:50563543|50563698 hsa-miR-7106-5p 0 1 0
chr3:50563543|50563698 hsa-miR-1972 1 1 0
chr3:50563543|50563698 hsa-miR-4786-5p 1 0 0
chr3:50563543|50563698 hsa-miR-6089 1 0 0
chr3:50563543|50563698 hsa-miR-4722-5p 1 0 0
chr3:50563543|50563698 hsa-miR-6741-5p 1 1 0
chr3:50563543|50563698 hsa-miR-4655-5p 1 0 0
chr3:50563543|50563698 hsa-miR-3194-5p 1 1 0
chr3:50563543|50563698 hsa-miR-6882-3p 1 0 0
chr3:50563543|50563698 hsa-miR-5001-3p 0 1 0
chr3:50563543|50563698 hsa-miR-3202 0 1 0
chr3:50563543|50563698 hsa-miR-7111-3p 0 1 0
chr3:50563543|50563698 hsa-miR-1911-3p 0 1 0
chr3:50563543|50563698 hsa-miR-3160-5p 0 1 0
chr3:50563543|50563698 hsa-miR-2114-3p 0 1 0
chr3:50563543|50563698 hsa-miR-6792-5p 0 1 0
chr3:50563543|50563698 hsa-miR-7844-5p 1 0 0
chr3:50563543|50563698 hsa-miR-6769b-5p 0 1 0
chr3:50563543|50563698 hsa-miR-6893-5p 1 0 0
chr3:50563543|50563698 hsa-miR-6769a-5p 1 1 0
chr3:50563543|50563698 hsa-miR-11181-3p 0 1 0
chr3:50563543|50563698 hsa-miR-6797-5p 1 1 0
chr3:50563543|50563698 hsa-miR-6808-5p 1 1 0
chr3:50563543|50563698 hsa-miR-6879-5p 1 0 0
chr3:50563543|50563698 hsa-miR-5196-5p 1 0 0
chr3:50563543|50563698 hsa-miR-6836-5p 0 1 0
chr3:50563543|50563698 hsa-miR-6794-5p 1 0 0
chr3:50563543|50563698 hsa-miR-4436b-3p 1 0 0
chr3:50563543|50563698 hsa-miR-1910-3p 1 1 0
chr3:50563543|50563698 hsa-miR-6511a-5p 1 0 0
chr3:50563543|50563698 hsa-miR-6511b-5p 1 0 0
chr3:50563543|50563698 hsa-miR-3085-5p 1 0 0
chr3:50563543|50563698 hsa-miR-7151-3p 0 1 0
chr3:50563543|50563698 hsa-miR-3173-3p 1 1 0
chr3:50563543|50563698 hsa-miR-4747-5p 1 0 0
chr3:50563543|50563698 hsa-miR-6876-5p 1 1 0
chr3:50563543|50563698 hsa-miR-3529-5p 1 1 0
chr3:50563543|50563698 hsa-miR-3059-5p 0 1 0
chr3:50563543|50563698 hsa-miR-6764-5p 1 0 0
chr3:50563543|50563698 hsa-miR-7162-5p 0 1 0
chr3:50563543|50563698 hsa-miR-526b-3p 0 1 0
chr3:50563543|50563698 hsa-miR-516b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:50563543|50563698
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MGKAESLVQICSSLYPRPCLRLASGRGSSTQ
Nucleotide Sequence CTGGGTAAGGCAGAAAGCCTGGTGCAGATTTGCTCCTCCTTGTACCCACGGCCCTGCTTGAGGCTGGCATCGGGGAGAGGAAGCAGCACTCAGTGA
CircID chr3:50563543|50563698
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MPVPSTFPSWVRQKAWCRFAPPCTHGPA
Nucleotide Sequence CTGCCTGTACCAAGCACTTTTCCTTCCTGGGTAAGGCAGAAAGCCTGGTGCAGATTTGCTCCTCCTTGTACCCACGGCCCTGCTTGA
CircID chr3:50563543|50563698
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MLLLVPTALLEAGIGERKQHSVSTSG
Nucleotide Sequence TTGCTCCTCCTTGTACCCACGGCCCTGCTTGAGGCTGGCATCGGGGAGAGGAAGCAGCACTCAGTGAGCACCTCTGGG
CircID chr3:50563543|50563698
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MSAASSPRCQPQAGPWVQGGANLHQAFCLTQEGKVLGTGRPGSVVGE
Nucleotide Sequence CTGAGTGCTGCTTCCTCTCCCCGATGCCAGCCTCAAGCAGGGCCGTGGGTACAAGGAGGAGCAAATCTGCACCAGGCTTTCTGCCTTACCCAGGAAGGAAAAGTGCTTGGTACAGGCAGACCAGGATCAGTGGTGGGGGAG
CircID chr3:50563543|50563698
ORF Type ORF5
Protein Length 44
Nucleotide Length 132
Protein Sequence MLPLPDASLKQGRGYKEEQICTRLSALPRKEKCLVQADQDQWWG
Nucleotide Sequence CTGCTTCCTCTCCCCGATGCCAGCCTCAAGCAGGGCCGTGGGTACAAGGAGGAGCAAATCTGCACCAGGCTTTCTGCCTTACCCAGGAAGGAAAAGTGCTTGGTACAGGCAGACCAGGATCAGTGGTGGGGG
CircID chr3:50563543|50563698
ORF Type ORF6
Protein Length 39
Nucleotide Length 117
Protein Sequence MPASSRAVGTRRSKSAPGFLPYPGRKSAWYRQTRISGGG
Nucleotide Sequence ATGCCAGCCTCAAGCAGGGCCGTGGGTACAAGGAGGAGCAAATCTGCACCAGGCTTTCTGCCTTACCCAGGAAGGAAAAGTGCTTGGTACAGGCAGACCAGGATCAGTGGTGGGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab