CircRNA Information

General Information
circRNA Basic Information
CircID chr3:52054052|52054167
Strand +
CircType exon
Host Gene ENSG00000164086.9;
Algorism CIRI2;
Sequence CAGCCTTCCCTGTCCAGATCCTGCCCTACCTCTACCTCGGCTGCGCCAAGGACTCCACCAACCTGGACGTGCTCGGCAAGTATGGCATCAAGTATATCCTCAATGTCACACCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:52054052|52054167 hsa-let-7b-5p 0 0 1
chr3:52054052|52054167 hsa-let-7b-3p 0 0 1
chr3:52054052|52054167 hsa-let-7c-5p 0 0 1
chr3:52054052|52054167 hsa-let-7c-3p 0 0 1
chr3:52054052|52054167 hsa-let-7d-5p 0 0 1
chr3:52054052|52054167 hsa-let-7d-3p 0 0 1
chr3:52054052|52054167 hsa-let-7e-5p 0 0 1
chr3:52054052|52054167 hsa-let-7e-3p 0 0 1
chr3:52054052|52054167 hsa-miR-98-5p 0 0 1
chr3:52054052|52054167 hsa-miR-98-3p 0 0 1
chr3:52054052|52054167 hsa-let-7g-5p 0 0 1
chr3:52054052|52054167 hsa-let-7g-3p 0 0 1
chr3:52054052|52054167 hsa-let-7i-5p 0 0 1
chr3:52054052|52054167 hsa-let-7i-3p 0 0 1
chr3:52054052|52054167 hsa-miR-422a 0 0 1
chr3:52054052|52054167 hsa-miR-609 0 0 1
chr3:52054052|52054167 hsa-miR-1262 0 0 1
chr3:52054052|52054167 hsa-miR-1224-5p 0 0 1
chr3:52054052|52054167 hsa-miR-1289 0 0 1
chr3:52054052|52054167 hsa-miR-542-3p 0 0 1
chr3:52054052|52054167 hsa-miR-378 0 0 1
chr3:52054052|52054167 hsa-let-7a 0 0 1
chr3:52054052|52054167 hsa-let-7f 0 0 1
chr3:52054052|52054167 hsa-miR-1185 0 0 1
chr3:52054052|52054167 hsa-miR-663a 1 0 0
chr3:52054052|52054167 hsa-miR-936 1 0 0
chr3:52054052|52054167 hsa-miR-1182 1 1 0
chr3:52054052|52054167 hsa-miR-3132 1 0 0
chr3:52054052|52054167 hsa-miR-3141 1 0 0
chr3:52054052|52054167 hsa-miR-3147 1 0 0
chr3:52054052|52054167 hsa-miR-3178 1 0 0
chr3:52054052|52054167 hsa-miR-4298 1 0 0
chr3:52054052|52054167 hsa-miR-4271 1 0 0
chr3:52054052|52054167 hsa-miR-4458 1 1 0
chr3:52054052|52054167 hsa-miR-4479 1 0 0
chr3:52054052|52054167 hsa-miR-4634 1 0 0
chr3:52054052|52054167 hsa-miR-4663 1 0 0
chr3:52054052|52054167 hsa-miR-4688 1 0 0
chr3:52054052|52054167 hsa-miR-4736 1 0 0
chr3:52054052|52054167 hsa-miR-5090 1 0 0
chr3:52054052|52054167 hsa-miR-6086 1 0 0
chr3:52054052|52054167 hsa-miR-6134 1 0 0
chr3:52054052|52054167 hsa-miR-12114 1 0 0
chr3:52054052|52054167 hsa-miR-6747-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6861-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6880-5p 1 1 0
chr3:52054052|52054167 hsa-miR-7847-3p 1 0 0
chr3:52054052|52054167 hsa-miR-4722-5p 1 0 0
chr3:52054052|52054167 hsa-miR-7160-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6741-5p 1 0 0
chr3:52054052|52054167 hsa-miR-197-5p 1 1 0
chr3:52054052|52054167 hsa-miR-6776-5p 1 0 0
chr3:52054052|52054167 hsa-miR-3151-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6772-5p 1 0 0
chr3:52054052|52054167 hsa-miR-486-3p 1 0 0
chr3:52054052|52054167 hsa-miR-6881-5p 1 0 0
chr3:52054052|52054167 hsa-miR-3156-5p 1 0 0
chr3:52054052|52054167 hsa-miR-3150b-3p 1 0 0
chr3:52054052|52054167 hsa-miR-615-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6786-5p 1 0 0
chr3:52054052|52054167 hsa-miR-1229-5p 1 0 0
chr3:52054052|52054167 hsa-miR-1228-5p 1 0 0
chr3:52054052|52054167 hsa-miR-296-3p 1 0 0
chr3:52054052|52054167 hsa-miR-877-5p 1 0 0
chr3:52054052|52054167 hsa-miR-4732-5p 1 0 0
chr3:52054052|52054167 hsa-miR-4743-5p 1 0 0
chr3:52054052|52054167 hsa-miR-149-3p 1 0 0
chr3:52054052|52054167 hsa-miR-202-3p 1 0 0
chr3:52054052|52054167 hsa-miR-6824-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6781-5p 1 0 0
chr3:52054052|52054167 hsa-miR-423-5p 1 0 0
chr3:52054052|52054167 hsa-let-7a-5p 1 1 0
chr3:52054052|52054167 hsa-miR-1207-5p 1 0 0
chr3:52054052|52054167 hsa-miR-4763-3p 1 1 0
chr3:52054052|52054167 hsa-miR-5001-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6743-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6756-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6803-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6851-5p 1 0 0
chr3:52054052|52054167 hsa-miR-11181-3p 1 0 0
chr3:52054052|52054167 hsa-miR-6722-3p 1 0 0
chr3:52054052|52054167 hsa-miR-6751-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6808-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6879-5p 1 0 0
chr3:52054052|52054167 hsa-miR-7111-5p 1 0 0
chr3:52054052|52054167 hsa-miR-4728-5p 1 0 0
chr3:52054052|52054167 hsa-miR-5196-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6780b-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6836-5p 1 0 0
chr3:52054052|52054167 hsa-miR-10396b-5p 1 0 0
chr3:52054052|52054167 hsa-miR-328-5p 1 0 0
chr3:52054052|52054167 hsa-miR-4632-5p 1 1 0
chr3:52054052|52054167 hsa-miR-4649-5p 1 0 0
chr3:52054052|52054167 hsa-miR-6735-5p 1 1 0
chr3:52054052|52054167 hsa-miR-6738-5p 1 0 0
chr3:52054052|52054167 hsa-miR-4436b-3p 1 1 0
chr3:52054052|52054167 hsa-miR-6831-5p 1 1 0
chr3:52054052|52054167 hsa-miR-3198 1 1 0
chr3:52054052|52054167 hsa-miR-1914-3p 1 0 0
chr3:52054052|52054167 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:52054052|52054167
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MSRSCPTSTSAAPRTPPTWTCSASMASSISSMSHP
Nucleotide Sequence CTGTCCAGATCCTGCCCTACCTCTACCTCGGCTGCGCCAAGGACTCCACCAACCTGGACGTGCTCGGCAAGTATGGCATCAAGTATATCCTCAATGTCACACCCA
CircID chr3:52054052|52054167
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MRQGLHQPGRARQVWHQVYPQCHTQ
Nucleotide Sequence CTGCGCCAAGGACTCCACCAACCTGGACGTGCTCGGCAAGTATGGCATCAAGTATATCCTCAATGTCACACCCAA
CircID chr3:52054052|52054167
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MPYLYLGCAKDSTNLDVLGKYGIKYILNVTPN
Nucleotide Sequence CTGCCCTACCTCTACCTCGGCTGCGCCAAGGACTCCACCAACCTGGACGTGCTCGGCAAGTATGGCATCAAGTATATCCTCAATGTCACACCCAAC
CircID chr3:52054052|52054167
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence LGVTLRIYLMPYLPSTSRLVESLAQPR
Nucleotide Sequence TTGGGTGTGACATTGAGGATATACTTGATGCCATACTTGCCGAGCACGTCCAGGTTGGTGGAGTCCTTGGCGCAGCCGAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab