CircNet

General Information

circRNA Basic Information

CircID	chr3:52202507\|52206751
Strand	+
CircType	exon
Host Gene	ENSG00000023330.14;
Algorism	find_circ;CIRI2;DCC;
Sequence	AAGACAAAACTGCTAAGGCCAAGGTCCAACAGACTCCTGATGGATCCCAGCAGAGTCCAGATGGCACACAGCTTCCGTCTGGACACCCCTTGCCTGCCACAAGCCAGGGCACTGCAAGCAAATGCCCTTTCCTGGCAGCACAGATGAATCAGAGAGGCAGCAGTGTCTTCTGCAAAGCCAGTCTTGAGCTTCAGGAGGATGTGCAGGAAATGAATGCCGTGAGGAAAGAGGTTGCTGAAACCTCAGCAGGCCCCAGTGTGGTTAGTGTGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAACTTCCAGGACATCATGCAAAAGCAAAGACCAGAAAGAGTGTCTCATCTTCTTCAAGATAACTTGCCAAAATCTGTTTCCACTTTTCAGTATGATCGTTTCTTTGAGAAAAAAATTGATGAGAAAAAGAATGACCACACCTATCGAGTTTTTAAAACTGTGAACCGGCGAGCACACATCTTCCCCATGGCAGATGACTATTCAGACTCCCTCATCACCAAAAAGCAAGTGTCAGTCTGGTGCAGTAATGACTACCTAGGAATGAGTCGCCACCCACGGGTGTGTGGGGCAGTTATGGACACTTTGAAACAACATGGTGCTGGGGCAGGTGGTACTAGAAATATTTCTGGAACTAGTAAATTCCATGTGGACTTAGAGCGGGAGCTGGCAGACCTCCATGGGAAAGATGCCGCACTCTTGTTTTCCTCGTGCTTTGTGGCCAATGACTCAACCCTCTTCACCCTGGCTAAGATGATGCCAGGCTGTGAGATTTACTCTGATTCTGGGAACCATGCCTCCATGATCCAAGGGATTCGAAACAGCCGAGTGCCAAAGTACATCTTCCGCCACAATGATGTCAGCCACCTCAGAGAACTGCTGCAAAGATCTGACCCCTCAGTCCCCAAGATTGTGGCATTTGAAACTGTCCATTCAATGGATG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	miRanda	targetScan
chr3:52202507\|52206751	hsa-miR-198	1	1
chr3:52202507\|52206751	hsa-miR-217-5p	1	1
chr3:52202507\|52206751	hsa-miR-217-3p	1	1
chr3:52202507\|52206751	hsa-miR-127-5p	1	1
chr3:52202507\|52206751	hsa-miR-22-5p	1	1
chr3:52202507\|52206751	hsa-miR-105-5p	1	1
chr3:52202507\|52206751	hsa-miR-93-3p	1	1
chr3:52202507\|52206751	hsa-miR-212-5p	1	1
chr3:52202507\|52206751	hsa-miR-216a-5p	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr3:52202507\|52206751
ORF Type	ORF1
Protein Length	274
Nucleotide Length	822
Protein Sequence	MNQRGSSVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSGLLKNFQDIMQKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLERELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMD
Nucleotide Sequence	ATGAATCAGAGAGGCAGCAGTGTCTTCTGCAAAGCCAGTCTTGAGCTTCAGGAGGATGTGCAGGAAATGAATGCCGTGAGGAAAGAGGTTGCTGAAACCTCAGCAGGCCCCAGTGTGGTTAGTGTGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAACTTCCAGGACATCATGCAAAAGCAAAGACCAGAAAGAGTGTCTCATCTTCTTCAAGATAACTTGCCAAAATCTGTTTCCACTTTTCAGTATGATCGTTTCTTTGAGAAAAAAATTGATGAGAAAAAGAATGACCACACCTATCGAGTTTTTAAAACTGTGAACCGGCGAGCACACATCTTCCCCATGGCAGATGACTATTCAGACTCCCTCATCACCAAAAAGCAAGTGTCAGTCTGGTGCAGTAATGACTACCTAGGAATGAGTCGCCACCCACGGGTGTGTGGGGCAGTTATGGACACTTTGAAACAACATGGTGCTGGGGCAGGTGGTACTAGAAATATTTCTGGAACTAGTAAATTCCATGTGGACTTAGAGCGGGAGCTGGCAGACCTCCATGGGAAAGATGCCGCACTCTTGTTTTCCTCGTGCTTTGTGGCCAATGACTCAACCCTCTTCACCCTGGCTAAGATGATGCCAGGCTGTGAGATTTACTCTGATTCTGGGAACCATGCCTCCATGATCCAAGGGATTCGAAACAGCCGAGTGCCAAAGTACATCTTCCGCCACAATGATGTCAGCCACCTCAGAGAACTGCTGCAAAGATCTGACCCCTCAGTCCCCAAGATTGTGGCATTTGAAACTGTCCATTCAATGGAT

CircID	chr3:52202507\|52206751
ORF Type	ORF2
Protein Length	44
Nucleotide Length	132
Protein Sequence	MMSWKFFSSPLGSPPSVFTLTTLGPAEVSATSFLTAFISCTSS*
Nucleotide Sequence	ATGATGTCCTGGAAGTTCTTCAGCAGTCCACTGGGATCCCCTCCATCGGTTTTCACACTAACCACACTGGGGCCTGCTGAGGTTTCAGCAACCTCTTTCCTCACGGCATTCATTTCCTGCACATCCTCCTGA

CircID	chr3:52202507\|52206751
ORF Type	ORF3
Protein Length	37
Nucleotide Length	111
Protein Sequence	MRHSFWSLLLHDVLEVLQQSTGIPSIGFHTNHTGAC*
Nucleotide Sequence	ATGAGACACTCTTTCTGGTCTTTGCTTTTGCATGATGTCCTGGAAGTTCTTCAGCAGTCCACTGGGATCCCCTCCATCGGTTTTCACACTAACCACACTGGGGCCTGCTGA

CircID	chr3:52202507\|52206751
ORF Type	ORF4
Protein Length	37
Nucleotide Length	111
Protein Sequence	MEFTSSRNISSTTCPSTMLFQSVHNCPTHPWVATHS*
Nucleotide Sequence	ATGGAATTTACTAGTTCCAGAAATATTTCTAGTACCACCTGCCCCAGCACCATGTTGTTTCAAAGTGTCCATAACTGCCCCACACACCCGTGGGTGGCGACTCATTCCTAG

CircID	chr3:52202507\|52206751
ORF Type	ORF5
Protein Length	36
Nucleotide Length	108
Protein Sequence	MDPSRVQMAHSFRLDTPCLPQARALQANALSWQHR*
Nucleotide Sequence	ATGGATCCCAGCAGAGTCCAGATGGCACACAGCTTCCGTCTGGACACCCCTTGCCTGCCACAAGCCAGGGCACTGCAAGCAAATGCCCTTTCCTGGCAGCACAGATGA

CircID	chr3:52202507\|52206751
ORF Type	ORF6
Protein Length	30
Nucleotide Length	90
Protein Sequence	MMSATSENCCKDLTPQSPRLWHLKLSIQWM
Nucleotide Sequence	ATGATGTCAGCCACCTCAGAGAACTGCTGCAAAGATCTGACCCCTCAGTCCCCAAGATTGTGGCATTTGAAACTGTCCATTCAATGGATG

CircID	chr3:52202507\|52206751
ORF Type	ORF7
Protein Length	70
Nucleotide Length	210
Protein Sequence	VKRVESLATKHEENKSAASFPWRSASSRSKSTWNLLVPEIFLVPPAPAPCCFKVSITAPHTRGWRLIPR*
Nucleotide Sequence	GTGAAGAGGGTTGAGTCATTGGCCACAAAGCACGAGGAAAACAAGAGTGCGGCATCTTTCCCATGGAGGTCTGCCAGCTCCCGCTCTAAGTCCACATGGAATTTACTAGTTCCAGAAATATTTCTAGTACCACCTGCCCCAGCACCATGTTGTTTCAAAGTGTCCATAACTGCCCCACACACCCGTGGGTGGCGACTCATTCCTAGGTAG

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr3:52202507\|52206751	MSI2	0	0	1
chr3:52202507\|52206751	MOV10	0	1	1
chr3:52202507\|52206751	ELAVL1	0	1	7
chr3:52202507\|52206751	CELF2	0	0	2
chr3:52202507\|52206751	CNBP	0	0	1
chr3:52202507\|52206751	SRSF10	0	0	1
chr3:52202507\|52206751	FMR1	0	0	6
chr3:52202507\|52206751	CPSF6	0	2	0
chr3:52202507\|52206751	NUDT21	0	1	0
chr3:52202507\|52206751	NOP58	3	0	6
chr3:52202507\|52206751	U2AF2	3	6	1
chr3:52202507\|52206751	SRSF9	0	0	1
chr3:52202507\|52206751	DDX54	0	0	2
chr3:52202507\|52206751	HNRNPL	0	1	0
chr3:52202507\|52206751	RBM15	0	1	0
chr3:52202507\|52206751	SF3A3	0	0	1
chr3:52202507\|52206751	FIP1L1	0	1	0
chr3:52202507\|52206751	PTBP1	2	1	1
chr3:52202507\|52206751	HNRNPC	0	19	3
chr3:52202507\|52206751	DHX9	0	0	1
chr3:52202507\|52206751	SMNDC1	1	0	0
chr3:52202507\|52206751	AUH	0	0	1
chr3:52202507\|52206751	LIN28B	0	1	1
chr3:52202507\|52206751	FXR1	0	0	2
chr3:52202507\|52206751	FXR2	0	0	3
chr3:52202507\|52206751	SND1	1	0	2
chr3:52202507\|52206751	IGF2BP1	0	0	4
chr3:52202507\|52206751	IGF2BP3	0	0	1
chr3:52202507\|52206751	IGF2BP2	0	0	6
chr3:52202507\|52206751	TARDBP	6	3	1
chr3:52202507\|52206751	YTHDC1	0	0	1
chr3:52202507\|52206751	BUD13	0	0	1
chr3:52202507\|52206751	PRPF8	0	1	1
chr3:52202507\|52206751	SLTM	0	0	1
chr3:52202507\|52206751	CSTF2T	1	0	1
chr3:52202507\|52206751	DKC1	0	0	1
chr3:52202507\|52206751	AGO2	1	1	7
chr3:52202507\|52206751	ATXN2	0	0	1
chr3:52202507\|52206751	EIF4A3	1	0	13
chr3:52202507\|52206751	FBL	0	0	1

CircRNA Information