CircRNA Information

General Information
circRNA Basic Information
CircID chr3:52402852|52403221
Strand -
CircType exon
Host Gene ENSG00000163930.8;
Algorism CIRI2;
Sequence TTCAGCAGTGCCAGCAGCTCCTGCCAAAACCCAGCATTGCACCTCTGATCGGGGCGGGCCAGCAACAAAGCCCCACGAGCAATAGGCAGCTAGAGGCAAGGATGAGCAGCGAGTCCATGCCTATCAAGGCCCCTGCCACCACCCAACCCAGAAAGTCTTCTGGCACATGGCTCCAGCCACCAATCTTCACACCAAAGTTCCAATCAAGAACTTGGCACCTGGGCAGGAGGAGCTCAGGCCTTACCCTCTGCCAGGATTAAAGGAGAAAACCACAACGGAGGCTCACCTTGGGTGAGTATTTCTCCCCACTCAAGGGCTCGCCAGGCCTCACCATCCCCGTCTTCTCTCTGCTGTCCGTGGCTTCCACGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:52402852|52403221 hsa-miR-22-5p 0 0 1
chr3:52402852|52403221 hsa-miR-22-3p 0 0 1
chr3:52402852|52403221 hsa-miR-96-5p 0 0 1
chr3:52402852|52403221 hsa-miR-96-3p 0 0 1
chr3:52402852|52403221 hsa-miR-182-5p 0 0 1
chr3:52402852|52403221 hsa-miR-182-3p 0 0 1
chr3:52402852|52403221 hsa-miR-137-5p 0 0 1
chr3:52402852|52403221 hsa-miR-137-3p 0 0 1
chr3:52402852|52403221 hsa-miR-383-5p 0 0 1
chr3:52402852|52403221 hsa-miR-383-3p 0 0 1
chr3:52402852|52403221 hsa-miR-526b-5p 0 0 1
chr3:52402852|52403221 hsa-miR-526b-3p 0 0 1
chr3:52402852|52403221 hsa-miR-539-5p 0 0 1
chr3:52402852|52403221 hsa-miR-539-3p 0 0 1
chr3:52402852|52403221 hsa-miR-555 0 1 1
chr3:52402852|52403221 hsa-miR-558 0 1 1
chr3:52402852|52403221 hsa-miR-629-5p 0 0 1
chr3:52402852|52403221 hsa-miR-629-3p 0 0 1
chr3:52402852|52403221 hsa-miR-639 0 0 1
chr3:52402852|52403221 hsa-miR-1271-5p 0 0 1
chr3:52402852|52403221 hsa-miR-1271-3p 0 0 1
chr3:52402852|52403221 hsa-miR-708-5p 0 0 1
chr3:52402852|52403221 hsa-miR-708-3p 0 0 1
chr3:52402852|52403221 hsa-miR-922 0 1 1
chr3:52402852|52403221 hsa-miR-939-5p 0 0 1
chr3:52402852|52403221 hsa-miR-939-3p 0 0 1
chr3:52402852|52403221 hsa-miR-1227-5p 0 0 1
chr3:52402852|52403221 hsa-miR-1227-3p 0 0 1
chr3:52402852|52403221 hsa-miR-1293 0 1 1
chr3:52402852|52403221 hsa-miR-1251-5p 0 0 1
chr3:52402852|52403221 hsa-miR-1251-3p 0 0 1
chr3:52402852|52403221 hsa-miR-1253 0 0 1
chr3:52402852|52403221 hsa-miR-1262 0 0 1
chr3:52402852|52403221 hsa-miR-671-5p 1 1 1
chr3:52402852|52403221 hsa-miR-491-5p 0 0 1
chr3:52402852|52403221 hsa-miR-542-5p 0 0 1
chr3:52402852|52403221 hsa-miR-509-3p 0 0 1
chr3:52402852|52403221 hsa-miR-483-5p 0 0 1
chr3:52402852|52403221 hsa-miR-28-5p 0 0 1
chr3:52402852|52403221 hsa-miR-502-5p 0 1 1
chr3:52402852|52403221 hsa-miR-767-3p 0 1 1
chr3:52402852|52403221 hsa-miR-455-5p 0 1 1
chr3:52402852|52403221 hsa-miR-1207-5p 0 1 1
chr3:52402852|52403221 hsa-miR-362-5p 0 1 1
chr3:52402852|52403221 hsa-miR-1233 0 0 1
chr3:52402852|52403221 hsa-miR-9 0 0 1
chr3:52402852|52403221 hsa-miR-500 0 0 1
chr3:52402852|52403221 hsa-miR-129-3p 0 0 1
chr3:52402852|52403221 hsa-miR-720 0 0 1
chr3:52402852|52403221 hsa-miR-602 1 0 0
chr3:52402852|52403221 hsa-miR-608 1 0 0
chr3:52402852|52403221 hsa-miR-612 1 0 0
chr3:52402852|52403221 hsa-miR-614 1 0 0
chr3:52402852|52403221 hsa-miR-661 1 0 0
chr3:52402852|52403221 hsa-miR-663a 1 0 0
chr3:52402852|52403221 hsa-miR-762 1 0 0
chr3:52402852|52403221 hsa-miR-936 1 1 0
chr3:52402852|52403221 hsa-miR-1270 1 0 0
chr3:52402852|52403221 hsa-miR-1538 1 0 0
chr3:52402852|52403221 hsa-miR-1976 0 1 0
chr3:52402852|52403221 hsa-miR-2861 1 0 0
chr3:52402852|52403221 hsa-miR-3131 1 0 0
chr3:52402852|52403221 hsa-miR-1193 0 1 0
chr3:52402852|52403221 hsa-miR-3175 0 1 0
chr3:52402852|52403221 hsa-miR-4259 1 0 0
chr3:52402852|52403221 hsa-miR-4268 0 1 0
chr3:52402852|52403221 hsa-miR-4270 1 0 0
chr3:52402852|52403221 hsa-miR-3652 0 1 0
chr3:52402852|52403221 hsa-miR-3936 1 0 0
chr3:52402852|52403221 hsa-miR-4440 1 1 0
chr3:52402852|52403221 hsa-miR-3135b 1 1 0
chr3:52402852|52403221 hsa-miR-4462 1 0 0
chr3:52402852|52403221 hsa-miR-4463 1 0 0
chr3:52402852|52403221 hsa-miR-4507 1 1 0
chr3:52402852|52403221 hsa-miR-4519 1 0 0
chr3:52402852|52403221 hsa-miR-4526 1 0 0
chr3:52402852|52403221 hsa-miR-4651 1 0 0
chr3:52402852|52403221 hsa-miR-4682 0 1 0
chr3:52402852|52403221 hsa-miR-4688 1 0 0
chr3:52402852|52403221 hsa-miR-4689 1 0 0
chr3:52402852|52403221 hsa-miR-4706 1 0 0
chr3:52402852|52403221 hsa-miR-4710 0 1 0
chr3:52402852|52403221 hsa-miR-4767 1 0 0
chr3:52402852|52403221 hsa-miR-5739 1 1 0
chr3:52402852|52403221 hsa-miR-6069 1 0 0
chr3:52402852|52403221 hsa-miR-6079 0 1 0
chr3:52402852|52403221 hsa-miR-6090 1 0 0
chr3:52402852|52403221 hsa-miR-6125 1 0 0
chr3:52402852|52403221 hsa-miR-7150 0 1 0
chr3:52402852|52403221 hsa-miR-8073 1 1 0
chr3:52402852|52403221 hsa-miR-8085 1 0 0
chr3:52402852|52403221 hsa-miR-8087 0 1 0
chr3:52402852|52403221 hsa-miR-135a-3p 1 0 0
chr3:52402852|52403221 hsa-miR-92a-1-5p 0 1 0
chr3:52402852|52403221 hsa-miR-92a-2-5p 0 1 0
chr3:52402852|52403221 hsa-miR-212-5p 1 1 0
chr3:52402852|52403221 hsa-miR-3150a-3p 0 1 0
chr3:52402852|52403221 hsa-miR-6861-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6857-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4687-3p 1 0 0
chr3:52402852|52403221 hsa-miR-6799-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6728-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6089 1 0 0
chr3:52402852|52403221 hsa-miR-6757-5p 1 1 0
chr3:52402852|52403221 hsa-miR-6880-5p 1 0 0
chr3:52402852|52403221 hsa-miR-7847-3p 1 0 0
chr3:52402852|52403221 hsa-miR-6746-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4722-5p 1 1 0
chr3:52402852|52403221 hsa-miR-6741-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6721-5p 1 1 0
chr3:52402852|52403221 hsa-miR-8069 1 0 0
chr3:52402852|52403221 hsa-miR-1915-5p 1 1 0
chr3:52402852|52403221 hsa-miR-6796-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6732-5p 1 0 0
chr3:52402852|52403221 hsa-miR-3190-3p 1 1 0
chr3:52402852|52403221 hsa-miR-6827-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6760-5p 0 1 0
chr3:52402852|52403221 hsa-miR-2467-3p 0 1 0
chr3:52402852|52403221 hsa-miR-6782-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6821-5p 1 0 0
chr3:52402852|52403221 hsa-miR-7855-5p 0 1 0
chr3:52402852|52403221 hsa-miR-5006-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6735-3p 1 0 0
chr3:52402852|52403221 hsa-miR-6882-3p 1 1 0
chr3:52402852|52403221 hsa-miR-6786-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4707-3p 1 1 0
chr3:52402852|52403221 hsa-miR-1229-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4640-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4691-3p 1 1 0
chr3:52402852|52403221 hsa-miR-1908-5p 1 0 0
chr3:52402852|52403221 hsa-miR-296-3p 1 1 0
chr3:52402852|52403221 hsa-miR-6823-5p 1 0 0
chr3:52402852|52403221 hsa-miR-3677-3p 1 0 0
chr3:52402852|52403221 hsa-miR-4713-3p 1 0 0
chr3:52402852|52403221 hsa-miR-6749-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4787-5p 1 0 0
chr3:52402852|52403221 hsa-miR-3158-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6878-5p 0 1 0
chr3:52402852|52403221 hsa-miR-7112-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6801-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6814-5p 0 1 0
chr3:52402852|52403221 hsa-miR-1296-5p 0 1 0
chr3:52402852|52403221 hsa-miR-4761-5p 0 1 0
chr3:52402852|52403221 hsa-miR-10400-5p 1 0 0
chr3:52402852|52403221 hsa-miR-1233-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4763-3p 1 1 0
chr3:52402852|52403221 hsa-miR-6778-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6787-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6812-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6865-5p 1 0 0
chr3:52402852|52403221 hsa-miR-1343-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6726-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6737-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6743-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6752-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6756-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6819-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6851-5p 1 0 0
chr3:52402852|52403221 hsa-miR-7110-5p 1 0 0
chr3:52402852|52403221 hsa-miR-1249-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6722-3p 1 1 0
chr3:52402852|52403221 hsa-miR-6797-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6808-5p 1 0 0
chr3:52402852|52403221 hsa-miR-3620-5p 1 0 0
chr3:52402852|52403221 hsa-miR-10396b-5p 1 0 0
chr3:52402852|52403221 hsa-miR-1909-3p 1 1 0
chr3:52402852|52403221 hsa-miR-4632-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4726-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4749-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6777-5p 1 0 0
chr3:52402852|52403221 hsa-miR-6889-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4723-5p 1 0 0
chr3:52402852|52403221 hsa-miR-3085-5p 1 0 0
chr3:52402852|52403221 hsa-miR-3940-5p 1 1 0
chr3:52402852|52403221 hsa-miR-6758-5p 1 1 0
chr3:52402852|52403221 hsa-miR-6856-5p 0 1 0
chr3:52402852|52403221 hsa-miR-6724-5p 1 0 0
chr3:52402852|52403221 hsa-miR-9851-5p 0 1 0
chr3:52402852|52403221 hsa-miR-6784-3p 0 1 0
chr3:52402852|52403221 hsa-miR-3085-3p 1 0 0
chr3:52402852|52403221 hsa-miR-3619-5p 1 0 0
chr3:52402852|52403221 hsa-miR-4659b-3p 0 1 0
chr3:52402852|52403221 hsa-miR-4659a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:52402852|52403221
ORF Type ORF1
Protein Length 79
Nucleotide Length 237
Protein Sequence MPPPNPESLLAHGSSHQSSHQSSNQELGTWAGGAQALPSARIKGENHNGGSPWVSISPHSRARQASPSPSSLCCPWLPR
Nucleotide Sequence CTGCCACCACCCAACCCAGAAAGTCTTCTGGCACATGGCTCCAGCCACCAATCTTCACACCAAAGTTCCAATCAAGAACTTGGCACCTGGGCAGGAGGAGCTCAGGCCTTACCCTCTGCCAGGATTAAAGGAGAAAACCACAACGGAGGCTCACCTTGGGTGAGTATTTCTCCCCACTCAAGGGCTCGCCAGGCCTCACCATCCCCGTCTTCTCTCTGCTGTCCGTGGCTTCCACGA
CircID chr3:52402852|52403221
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MAPATNLHTKVPIKNLAPGQEELRPYPLPGLKEKTTTEAHLG
Nucleotide Sequence ATGGCTCCAGCCACCAATCTTCACACCAAAGTTCCAATCAAGAACTTGGCACCTGGGCAGGAGGAGCTCAGGCCTTACCCTCTGCCAGGATTAAAGGAGAAAACCACAACGGAGGCTCACCTTGGGTGA
CircID chr3:52402852|52403221
ORF Type ORF3
Protein Length 79
Nucleotide Length 240
Protein Sequence MPKPSIAPLIGAGQQQSPTSNRQLEARMSSESMPIKAPATTQPRKSSGTWLQPPIFTPKFQSRTWHLGRRSSGLTLCQD
Nucleotide Sequence CTGCCAAAACCCAGCATTGCACCTCTGATCGGGGCGGGCCAGCAACAAAGCCCCACGAGCAATAGGCAGCTAGAGGCAAGGATGAGCAGCGAGTCCATGCCTATCAAGGCCCCTGCCACCACCCAACCCAGAAAGTCTTCTGGCACATGGCTCCAGCCACCAATCTTCACACCAAAGTTCCAATCAAGAACTTGGCACCTGGGCAGGAGGAGCTCAGGCCTTACCCTCTGCCAGGATTAA
CircID chr3:52402852|52403221
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MGEYFSPLKGSPGLTIPVFSLLSVAST
Nucleotide Sequence TTGGGTGAGTATTTCTCCCCACTCAAGGGCTCGCCAGGCCTCACCATCCCCGTCTTCTCTCTGCTGTCCGTGGCTTCCACG
CircID chr3:52402852|52403221
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MVRPGEPLSGEKYSPKVSLRCGFLL
Nucleotide Sequence ATGGTGAGGCCTGGCGAGCCCTTGAGTGGGGAGAAATACTCACCCAAGGTGAGCCTCCGTTGTGGTTTTCTCCTTTAA
CircID chr3:52402852|52403221
ORF Type ORF6
Protein Length 74
Nucleotide Length 225
Protein Sequence MPRCQVLDWNFGVKIGGWSHVPEDFLGWVVAGALIGMDSLLILASSCLLLVGLCCWPAPIRGAMLGFGRSCWHC
Nucleotide Sequence CTGCCCAGGTGCCAAGTTCTTGATTGGAACTTTGGTGTGAAGATTGGTGGCTGGAGCCATGTGCCAGAAGACTTTCTGGGTTGGGTGGTGGCAGGGGCCTTGATAGGCATGGACTCGCTGCTCATCCTTGCCTCTAGCTGCCTATTGCTCGTGGGGCTTTGTTGCTGGCCCGCCCCGATCAGAGGTGCAATGCTGGGTTTTGGCAGGAGCTGCTGGCACTGCTGA
CircID chr3:52402852|52403221
ORF Type ORF7
Protein Length 33
Nucleotide Length 99
Protein Sequence MPLAAYCSWGFVAGPPRSEVQCWVLAGAAGTAE
Nucleotide Sequence TTGCCTCTAGCTGCCTATTGCTCGTGGGGCTTTGTTGCTGGCCCGCCCCGATCAGAGGTGCAATGCTGGGTTTTGGCAGGAGCTGCTGGCACTGCTGAA
CircID chr3:52402852|52403221
ORF Type ORF8
Protein Length 37
Nucleotide Length 114
Protein Sequence MELWCEDWWLEPCARRLSGLGGGRGLDRHGLAAHPCL
Nucleotide Sequence TTGGAACTTTGGTGTGAAGATTGGTGGCTGGAGCCATGTGCCAGAAGACTTTCTGGGTTGGGTGGTGGCAGGGGCCTTGATAGGCATGGACTCGCTGCTCATCCTTGCCTCTAG
CircID chr3:52402852|52403221
ORF Type ORF9
Protein Length 29
Nucleotide Length 87
Protein Sequence MPIARGALLLARPDQRCNAGFWQELLALL
Nucleotide Sequence CTGCCTATTGCTCGTGGGGCTTTGTTGCTGGCCCGCCCCGATCAGAGGTGCAATGCTGGGTTTTGGCAGGAGCTGCTGGCACTGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab