CircRNA Information

General Information
circRNA Basic Information
CircID chr3:52451216|52451442
Strand -
CircType exon
Host Gene ENSG00000114854.6;
Algorism CIRI2;
Sequence CCCAGGACTCAGCTGGAGTTGGAGGCTGGGCATAGGCAGCTCTGGGTGAAGGTCAGCATCTACTCCACACCCTTCATGAACTCCAGGAACTCTGTGGAAAGAGGGGCAGGTGTGGGTTGAGGGTAGGGGCTGGGCAGGGCATGGAGGCAGGAGATCAGCCCACCCACCCGCTTACCATCATAGTCGATGCGGCCGTCGTTGTTCTTGTCTCCGTCCTTCATGAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:52451216|52451442 hsa-miR-22-5p 0 0 1
chr3:52451216|52451442 hsa-miR-22-3p 0 0 1
chr3:52451216|52451442 hsa-miR-184 0 1 1
chr3:52451216|52451442 hsa-miR-433-5p 0 0 1
chr3:52451216|52451442 hsa-miR-433-3p 0 0 1
chr3:52451216|52451442 hsa-miR-412-5p 0 0 1
chr3:52451216|52451442 hsa-miR-412-3p 0 0 1
chr3:52451216|52451442 hsa-miR-558 0 0 1
chr3:52451216|52451442 hsa-miR-766-5p 0 0 1
chr3:52451216|52451442 hsa-miR-766-3p 0 0 1
chr3:52451216|52451442 hsa-miR-874-5p 0 0 1
chr3:52451216|52451442 hsa-miR-874-3p 0 0 1
chr3:52451216|52451442 hsa-miR-541-5p 0 0 1
chr3:52451216|52451442 hsa-miR-541-3p 0 0 1
chr3:52451216|52451442 hsa-miR-1228-5p 0 0 1
chr3:52451216|52451442 hsa-miR-1228-3p 0 0 1
chr3:52451216|52451442 hsa-miR-1206 0 0 1
chr3:52451216|52451442 hsa-miR-1293 0 0 1
chr3:52451216|52451442 hsa-miR-1272 0 0 1
chr3:52451216|52451442 hsa-miR-1252-5p 0 0 1
chr3:52451216|52451442 hsa-miR-1252-3p 0 0 1
chr3:52451216|52451442 hsa-miR-1322 0 0 1
chr3:52451216|52451442 hsa-miR-146b-3p 0 0 1
chr3:52451216|52451442 hsa-miR-654-5p 0 0 1
chr3:52451216|52451442 hsa-miR-508-5p 0 0 1
chr3:52451216|52451442 hsa-miR-628-5p 0 1 1
chr3:52451216|52451442 hsa-miR-324-3p 0 0 1
chr3:52451216|52451442 hsa-miR-886-3p 0 0 1
chr3:52451216|52451442 hsa-miR-1976 1 1 0
chr3:52451216|52451442 hsa-miR-3960 1 0 0
chr3:52451216|52451442 hsa-miR-4682 1 0 0
chr3:52451216|52451442 hsa-miR-5091 0 1 0
chr3:52451216|52451442 hsa-miR-5194 0 1 0
chr3:52451216|52451442 hsa-miR-8060 0 1 0
chr3:52451216|52451442 hsa-miR-6747-3p 1 1 0
chr3:52451216|52451442 hsa-miR-6747-5p 0 1 0
chr3:52451216|52451442 hsa-miR-6836-3p 1 1 0
chr3:52451216|52451442 hsa-miR-210-5p 0 1 0
chr3:52451216|52451442 hsa-miR-25-5p 0 1 0
chr3:52451216|52451442 hsa-miR-6515-5p 0 1 0
chr3:52451216|52451442 hsa-miR-6759-5p 0 1 0
chr3:52451216|52451442 hsa-miR-6849-3p 0 1 0
chr3:52451216|52451442 hsa-miR-4728-3p 1 1 0
chr3:52451216|52451442 hsa-miR-1915-5p 1 0 0
chr3:52451216|52451442 hsa-miR-6748-5p 0 1 0
chr3:52451216|52451442 hsa-miR-3126-5p 0 1 0
chr3:52451216|52451442 hsa-miR-6774-3p 1 0 0
chr3:52451216|52451442 hsa-miR-6882-3p 0 1 0
chr3:52451216|52451442 hsa-miR-6852-5p 0 1 0
chr3:52451216|52451442 hsa-miR-4763-5p 1 1 0
chr3:52451216|52451442 hsa-miR-5001-3p 1 1 0
chr3:52451216|52451442 hsa-miR-619-3p 0 1 0
chr3:52451216|52451442 hsa-miR-378a-5p 1 1 0
chr3:52451216|52451442 hsa-miR-6736-3p 0 1 0
chr3:52451216|52451442 hsa-miR-6769a-3p 0 1 0
chr3:52451216|52451442 hsa-miR-2115-5p 0 1 0
chr3:52451216|52451442 hsa-miR-1237-3p 1 0 0
chr3:52451216|52451442 hsa-miR-6804-3p 1 1 0
chr3:52451216|52451442 hsa-miR-6752-3p 0 1 0
chr3:52451216|52451442 hsa-miR-6872-3p 0 1 0
chr3:52451216|52451442 hsa-miR-7848-3p 0 1 0
chr3:52451216|52451442 hsa-miR-1914-5p 1 1 0
chr3:52451216|52451442 hsa-miR-6738-3p 0 1 0
chr3:52451216|52451442 hsa-miR-4749-3p 0 1 0
chr3:52451216|52451442 hsa-miR-6748-3p 0 1 0
chr3:52451216|52451442 hsa-miR-6767-3p 0 1 0
chr3:52451216|52451442 hsa-miR-4750-3p 1 0 0
chr3:52451216|52451442 hsa-miR-3173-5p 0 1 0
chr3:52451216|52451442 hsa-miR-3162-3p 0 1 0
chr3:52451216|52451442 hsa-miR-5581-3p 0 1 0
chr3:52451216|52451442 hsa-miR-6769b-5p 0 1 0
chr3:52451216|52451442 hsa-miR-6754-3p 1 1 0
chr3:52451216|52451442 hsa-miR-6883-5p 1 0 0
chr3:52451216|52451442 hsa-miR-6799-3p 0 1 0
chr3:52451216|52451442 hsa-miR-6877-3p 0 1 0
chr3:52451216|52451442 hsa-miR-6766-5p 0 1 0
chr3:52451216|52451442 hsa-miR-6805-3p 0 1 0
chr3:52451216|52451442 hsa-miR-10392-3p 1 0 0
chr3:52451216|52451442 hsa-miR-6819-3p 0 1 0
chr3:52451216|52451442 hsa-miR-1295b-5p 0 1 0
chr3:52451216|52451442 hsa-miR-6843-3p 0 1 0
chr3:52451216|52451442 hsa-miR-129-1-3p 0 1 0
chr3:52451216|52451442 hsa-miR-129-2-3p 0 1 0
chr3:52451216|52451442 hsa-miR-130a-5p 0 1 0
chr3:52451216|52451442 hsa-miR-1912-3p 0 1 0
chr3:52451216|52451442 hsa-miR-10525-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:52451216|52451442
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MELEAGHRQLWVKVSIYSTPFMNSRNSVERGAGVG
Nucleotide Sequence CTGGAGTTGGAGGCTGGGCATAGGCAGCTCTGGGTGAAGGTCAGCATCTACTCCACACCCTTCATGAACTCCAGGAACTCTGTGGAAAGAGGGGCAGGTGTGGGTTGA
CircID chr3:52451216|52451442
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MWKEGQVWVEGRGWAGHGGRRSAHPPAYHHSRCGRRCSCLRPS
Nucleotide Sequence CTGTGGAAAGAGGGGCAGGTGTGGGTTGAGGGTAGGGGCTGGGCAGGGCATGGAGGCAGGAGATCAGCCCACCCACCCGCTTACCATCATAGTCGATGCGGCCGTCGTTGTTCTTGTCTCCGTCCTTCATGA
CircID chr3:52451216|52451442
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MGEGQHLLHTLHELQELCGKRGRCGLRVGAGQGMEAGDQPTHPLTIIVDAAVVVLVSVLHEL
Nucleotide Sequence CTGGGTGAAGGTCAGCATCTACTCCACACCCTTCATGAACTCCAGGAACTCTGTGGAAAGAGGGGCAGGTGTGGGTTGAGGGTAGGGGCTGGGCAGGGCATGGAGGCAGGAGATCAGCCCACCCACCCGCTTACCATCATAGTCGATGCGGCCGTCGTTGTTCTTGTCTCCGTCCTTCATGAGCTC
CircID chr3:52451216|52451442
ORF Type ORF4
Protein Length 53
Nucleotide Length 162
Protein Sequence MKDGDKNNDGRIDYDGKRVGGLISCLHALPSPYPQPTPAPLSTEFLEFMKGVE
Nucleotide Sequence ATGAAGGACGGAGACAAGAACAACGACGGCCGCATCGACTATGATGGTAAGCGGGTGGGTGGGCTGATCTCCTGCCTCCATGCCCTGCCCAGCCCCTACCCTCAACCCACACCTGCCCCTCTTTCCACAGAGTTCCTGGAGTTCATGAAGGGTGTGGAGTAG
CircID chr3:52451216|52451442
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MPPCPAQPLPSTHTCPSFHRVPGVHEGCGVDADLHPELPMPSLQLQLSPG
Nucleotide Sequence CTGCCTCCATGCCCTGCCCAGCCCCTACCCTCAACCCACACCTGCCCCTCTTTCCACAGAGTTCCTGGAGTTCATGAAGGGTGTGGAGTAGATGCTGACCTTCACCCAGAGCTGCCTATGCCCAGCCTCCAACTCCAGCTGAGTCCTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab