CircRNA Information

General Information
circRNA Basic Information
CircID chr3:52452119|52452509
Strand -
CircType exon
Host Gene ENSG00000114854.6;
Algorism CIRI2;
Sequence CTCATCGATCATCTCCTGCAGCTCCTCAGGGGTGGGGTTCTGGCCCAGCATCCTCATCACCTTGCCCAGCTCCTTGGTGCTGATGCAGCCATCCTCAGCGCCCAGCACGAAGATGTCGAAGGCTGCCTTGAACTCTGTGTTCAGGGGTTGGGGGGCACAGTAGTCAGGGCTCAGCAGCCAGGACCACGGAGGGCCAGAACCCTGGGGCCACCTGCCAACCTGCCCACCTCCCTCGGAGACCTCTCTGAGGGCAGAGCAAGAGGGACCAAGCCTCTGGTCTCTGGCCTGGGGTCCTCTTCTGATAAGGGGTCCCCATGCCAGCCTGGACCCGCTGGTCTCCCACATGTGTGATAGGGATTCTCACCATTTTTCTGCTCTTCTGTCAGCTGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:52452119|52452509 hsa-miR-29a-5p 0 0 1
chr3:52452119|52452509 hsa-miR-29a-3p 0 0 1
chr3:52452119|52452509 hsa-miR-143-5p 0 0 1
chr3:52452119|52452509 hsa-miR-143-3p 0 0 1
chr3:52452119|52452509 hsa-miR-29c-5p 0 0 1
chr3:52452119|52452509 hsa-miR-29c-3p 0 0 1
chr3:52452119|52452509 hsa-miR-377-5p 0 0 1
chr3:52452119|52452509 hsa-miR-377-3p 0 0 1
chr3:52452119|52452509 hsa-miR-328-5p 0 0 1
chr3:52452119|52452509 hsa-miR-328-3p 0 0 1
chr3:52452119|52452509 hsa-miR-133b 0 1 1
chr3:52452119|52452509 hsa-miR-517-5p 0 0 1
chr3:52452119|52452509 hsa-miR-517a-3p 0 0 1
chr3:52452119|52452509 hsa-miR-517c-3p 0 0 1
chr3:52452119|52452509 hsa-miR-522-5p 0 0 1
chr3:52452119|52452509 hsa-miR-522-3p 0 0 1
chr3:52452119|52452509 hsa-miR-558 0 0 1
chr3:52452119|52452509 hsa-miR-580-5p 0 0 1
chr3:52452119|52452509 hsa-miR-580-3p 0 0 1
chr3:52452119|52452509 hsa-miR-604 0 0 1
chr3:52452119|52452509 hsa-miR-612 1 1 1
chr3:52452119|52452509 hsa-miR-646 0 0 1
chr3:52452119|52452509 hsa-miR-647 0 1 1
chr3:52452119|52452509 hsa-miR-657 0 0 1
chr3:52452119|52452509 hsa-miR-892a 0 0 1
chr3:52452119|52452509 hsa-miR-541-5p 0 0 1
chr3:52452119|52452509 hsa-miR-541-3p 0 0 1
chr3:52452119|52452509 hsa-miR-708-5p 0 0 1
chr3:52452119|52452509 hsa-miR-708-3p 0 0 1
chr3:52452119|52452509 hsa-miR-663b 0 1 1
chr3:52452119|52452509 hsa-miR-1205 0 0 1
chr3:52452119|52452509 hsa-miR-1286 0 0 1
chr3:52452119|52452509 hsa-miR-1291 0 0 1
chr3:52452119|52452509 hsa-miR-1321 0 1 1
chr3:52452119|52452509 hsa-miR-1225-3p 1 0 1
chr3:52452119|52452509 hsa-miR-361-5p 0 1 1
chr3:52452119|52452509 hsa-miR-299-3p 0 0 1
chr3:52452119|52452509 hsa-miR-654-5p 0 0 1
chr3:52452119|52452509 hsa-miR-28-5p 0 0 1
chr3:52452119|52452509 hsa-miR-1207-5p 1 0 1
chr3:52452119|52452509 hsa-miR-324-3p 0 0 1
chr3:52452119|52452509 hsa-miR-125a-5p 0 0 1
chr3:52452119|52452509 hsa-miR-369-5p 0 0 1
chr3:52452119|52452509 hsa-miR-1233 0 0 1
chr3:52452119|52452509 hsa-miR-125b 0 0 1
chr3:52452119|52452509 hsa-miR-642 0 0 1
chr3:52452119|52452509 hsa-miR-1285 0 0 1
chr3:52452119|52452509 hsa-miR-133a 0 0 1
chr3:52452119|52452509 hsa-miR-29b 0 0 1
chr3:52452119|52452509 hsa-miR-1185 0 0 1
chr3:52452119|52452509 hsa-miR-492 1 0 0
chr3:52452119|52452509 hsa-miR-762 1 0 0
chr3:52452119|52452509 hsa-miR-2113 0 1 0
chr3:52452119|52452509 hsa-miR-765 1 0 0
chr3:52452119|52452509 hsa-miR-298 1 0 0
chr3:52452119|52452509 hsa-miR-920 1 1 0
chr3:52452119|52452509 hsa-miR-940 1 0 0
chr3:52452119|52452509 hsa-miR-1183 1 0 0
chr3:52452119|52452509 hsa-miR-1268a 1 0 0
chr3:52452119|52452509 hsa-miR-544b 0 1 0
chr3:52452119|52452509 hsa-miR-3138 1 0 0
chr3:52452119|52452509 hsa-miR-3139 0 1 0
chr3:52452119|52452509 hsa-miR-3147 1 1 0
chr3:52452119|52452509 hsa-miR-3154 1 0 0
chr3:52452119|52452509 hsa-miR-3196 1 0 0
chr3:52452119|52452509 hsa-miR-4319 0 1 0
chr3:52452119|52452509 hsa-miR-4322 1 0 0
chr3:52452119|52452509 hsa-miR-4259 1 0 0
chr3:52452119|52452509 hsa-miR-4270 0 1 0
chr3:52452119|52452509 hsa-miR-3621 0 1 0
chr3:52452119|52452509 hsa-miR-3660 1 1 0
chr3:52452119|52452509 hsa-miR-3911 1 0 0
chr3:52452119|52452509 hsa-miR-1268b 1 0 0
chr3:52452119|52452509 hsa-miR-4468 1 1 0
chr3:52452119|52452509 hsa-miR-4486 0 1 0
chr3:52452119|52452509 hsa-miR-4487 1 0 0
chr3:52452119|52452509 hsa-miR-4498 1 0 0
chr3:52452119|52452509 hsa-miR-4505 1 0 0
chr3:52452119|52452509 hsa-miR-4508 1 0 0
chr3:52452119|52452509 hsa-miR-4510 0 1 0
chr3:52452119|52452509 hsa-miR-4525 1 0 0
chr3:52452119|52452509 hsa-miR-4526 0 1 0
chr3:52452119|52452509 hsa-miR-1587 1 0 0
chr3:52452119|52452509 hsa-miR-4651 1 0 0
chr3:52452119|52452509 hsa-miR-4663 0 1 0
chr3:52452119|52452509 hsa-miR-4689 1 0 0
chr3:52452119|52452509 hsa-miR-4736 0 1 0
chr3:52452119|52452509 hsa-miR-4739 1 1 0
chr3:52452119|52452509 hsa-miR-4751 0 1 0
chr3:52452119|52452509 hsa-miR-4784 1 0 0
chr3:52452119|52452509 hsa-miR-5691 0 1 0
chr3:52452119|52452509 hsa-miR-6085 1 1 0
chr3:52452119|52452509 hsa-miR-6127 0 1 0
chr3:52452119|52452509 hsa-miR-6129 0 1 0
chr3:52452119|52452509 hsa-miR-6133 0 1 0
chr3:52452119|52452509 hsa-miR-6134 0 1 0
chr3:52452119|52452509 hsa-miR-6165 1 0 0
chr3:52452119|52452509 hsa-miR-6860 1 1 0
chr3:52452119|52452509 hsa-miR-8089 1 0 0
chr3:52452119|52452509 hsa-miR-12119 0 1 0
chr3:52452119|52452509 hsa-miR-4435 0 1 0
chr3:52452119|52452509 hsa-miR-93-3p 0 1 0
chr3:52452119|52452509 hsa-miR-3194-3p 0 1 0
chr3:52452119|52452509 hsa-miR-6809-5p 0 1 0
chr3:52452119|52452509 hsa-miR-671-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6861-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6825-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6894-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6857-5p 1 1 0
chr3:52452119|52452509 hsa-miR-1972 0 1 0
chr3:52452119|52452509 hsa-miR-150-5p 0 1 0
chr3:52452119|52452509 hsa-miR-6799-5p 1 1 0
chr3:52452119|52452509 hsa-miR-4786-5p 0 1 0
chr3:52452119|52452509 hsa-miR-3064-5p 0 1 0
chr3:52452119|52452509 hsa-miR-6762-3p 0 1 0
chr3:52452119|52452509 hsa-miR-3605-5p 0 1 0
chr3:52452119|52452509 hsa-miR-4711-5p 0 1 0
chr3:52452119|52452509 hsa-miR-185-3p 1 0 0
chr3:52452119|52452509 hsa-miR-6829-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6798-5p 1 0 0
chr3:52452119|52452509 hsa-miR-1224-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6881-5p 1 0 0
chr3:52452119|52452509 hsa-miR-7855-5p 0 1 0
chr3:52452119|52452509 hsa-miR-345-3p 0 1 0
chr3:52452119|52452509 hsa-miR-6852-5p 1 0 0
chr3:52452119|52452509 hsa-miR-4640-5p 0 1 0
chr3:52452119|52452509 hsa-miR-885-3p 1 0 0
chr3:52452119|52452509 hsa-miR-1228-5p 1 1 0
chr3:52452119|52452509 hsa-miR-889-5p 0 1 0
chr3:52452119|52452509 hsa-miR-6847-5p 1 1 0
chr3:52452119|52452509 hsa-miR-6800-5p 1 0 0
chr3:52452119|52452509 hsa-miR-3065-3p 0 1 0
chr3:52452119|52452509 hsa-miR-7112-5p 1 0 0
chr3:52452119|52452509 hsa-miR-4652-5p 0 1 0
chr3:52452119|52452509 hsa-miR-6889-3p 0 1 0
chr3:52452119|52452509 hsa-miR-4732-3p 0 1 0
chr3:52452119|52452509 hsa-miR-6793-3p 1 1 0
chr3:52452119|52452509 hsa-miR-3614-3p 0 1 0
chr3:52452119|52452509 hsa-miR-3605-3p 0 1 0
chr3:52452119|52452509 hsa-miR-6883-3p 0 1 0
chr3:52452119|52452509 hsa-miR-6779-3p 0 1 0
chr3:52452119|52452509 hsa-miR-3617-3p 0 1 0
chr3:52452119|52452509 hsa-miR-133a-3p 0 1 0
chr3:52452119|52452509 hsa-miR-1233-5p 1 1 0
chr3:52452119|52452509 hsa-miR-4763-3p 1 1 0
chr3:52452119|52452509 hsa-miR-6778-5p 1 1 0
chr3:52452119|52452509 hsa-miR-6816-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6865-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6893-5p 1 0 0
chr3:52452119|52452509 hsa-miR-1343-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6726-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6743-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6769a-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6815-5p 0 1 0
chr3:52452119|52452509 hsa-miR-6851-5p 1 0 0
chr3:52452119|52452509 hsa-miR-10401-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6763-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6774-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6788-5p 1 1 0
chr3:52452119|52452509 hsa-miR-6879-5p 1 1 0
chr3:52452119|52452509 hsa-miR-3620-5p 1 0 0
chr3:52452119|52452509 hsa-miR-5189-5p 0 1 0
chr3:52452119|52452509 hsa-miR-5196-5p 1 0 0
chr3:52452119|52452509 hsa-miR-4632-5p 1 0 0
chr3:52452119|52452509 hsa-miR-4649-5p 1 0 0
chr3:52452119|52452509 hsa-miR-4726-5p 0 1 0
chr3:52452119|52452509 hsa-miR-6735-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6848-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6858-5p 1 1 0
chr3:52452119|52452509 hsa-miR-3187-5p 0 1 0
chr3:52452119|52452509 hsa-miR-939-5p 1 0 0
chr3:52452119|52452509 hsa-miR-3199 1 0 0
chr3:52452119|52452509 hsa-miR-6758-5p 0 1 0
chr3:52452119|52452509 hsa-miR-6856-5p 1 0 0
chr3:52452119|52452509 hsa-miR-1285-3p 0 1 0
chr3:52452119|52452509 hsa-miR-1199-5p 0 1 0
chr3:52452119|52452509 hsa-miR-4667-5p 1 1 0
chr3:52452119|52452509 hsa-miR-6791-5p 1 0 0
chr3:52452119|52452509 hsa-miR-9851-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6529-5p 0 1 0
chr3:52452119|52452509 hsa-miR-6805-3p 1 1 0
chr3:52452119|52452509 hsa-miR-6775-3p 0 1 0
chr3:52452119|52452509 hsa-miR-6529-3p 0 1 0
chr3:52452119|52452509 hsa-miR-3085-3p 1 1 0
chr3:52452119|52452509 hsa-miR-6764-5p 0 1 0
chr3:52452119|52452509 hsa-miR-1255b-5p 1 0 0
chr3:52452119|52452509 hsa-miR-6843-3p 0 1 0
chr3:52452119|52452509 hsa-miR-5588-5p 0 1 0
chr3:52452119|52452509 hsa-miR-3927-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:52452119|52452509
ORF Type ORF1
Protein Length 111
Nucleotide Length 336
Protein Sequence MQLLRGGVLAQHPHHLAQLLGADAAILSAQHEDVEGCLELCVQGLGGTVVRAQQPGPRRARTLGPPANLPTSLGDLSEGRARGTKPLVSGLGSSSDKGSPCQPGPAGLPHV
Nucleotide Sequence CTGCAGCTCCTCAGGGGTGGGGTTCTGGCCCAGCATCCTCATCACCTTGCCCAGCTCCTTGGTGCTGATGCAGCCATCCTCAGCGCCCAGCACGAAGATGTCGAAGGCTGCCTTGAACTCTGTGTTCAGGGGTTGGGGGGCACAGTAGTCAGGGCTCAGCAGCCAGGACCACGGAGGGCCAGAACCCTGGGGCCACCTGCCAACCTGCCCACCTCCCTCGGAGACCTCTCTGAGGGCAGAGCAAGAGGGACCAAGCCTCTGGTCTCTGGCCTGGGGTCCTCTTCTGATAAGGGGTCCCCATGCCAGCCTGGACCCGCTGGTCTCCCACATGTGTGA
CircID chr3:52452119|52452509
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MPSSLVLMQPSSAPSTKMSKAALNSVFRGWGAQ
Nucleotide Sequence TTGCCCAGCTCCTTGGTGCTGATGCAGCCATCCTCAGCGCCCAGCACGAAGATGTCGAAGGCTGCCTTGAACTCTGTGTTCAGGGGTTGGGGGGCACAGTAG
CircID chr3:52452119|52452509
ORF Type ORF3
Protein Length 60
Nucleotide Length 180
Protein Sequence MPTCPPPSETSLRAEQEGPSLWSLAWGPLLIRGPHASLDPLVSHMCDRDSHHFSALLSAA
Nucleotide Sequence CTGCCAACCTGCCCACCTCCCTCGGAGACCTCTCTGAGGGCAGAGCAAGAGGGACCAAGCCTCTGGTCTCTGGCCTGGGGTCCTCTTCTGATAAGGGGTCCCCATGCCAGCCTGGACCCGCTGGTCTCCCACATGTGTGATAGGGATTCTCACCATTTTTCTGCTCTTCTGTCAGCTGCT
CircID chr3:52452119|52452509
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MCSGVGGHSSQGSAARTTEGQNPGATCQPAHLPRRPL
Nucleotide Sequence CTGTGTTCAGGGGTTGGGGGGCACAGTAGTCAGGGCTCAGCAGCCAGGACCACGGAGGGCCAGAACCCTGGGGCCACCTGCCAACCTGCCCACCTCCCTCGGAGACCTCTCTGA
CircID chr3:52452119|52452509
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MPAWTRWSPTCVIGILTIFLLFCQL
Nucleotide Sequence ATGCCAGCCTGGACCCGCTGGTCTCCCACATGTGTGATAGGGATTCTCACCATTTTTCTGCTCTTCTGTCAGCTG
CircID chr3:52452119|52452509
ORF Type ORF6
Protein Length 67
Nucleotide Length 204
Protein Sequence MVRIPITHVGDQRVQAGMGTPYQKRTPGQRPEAWSLLLCPQRGLRGRWAGWQVAPGFWPSVVLAAEP
Nucleotide Sequence ATGGTGAGAATCCCTATCACACATGTGGGAGACCAGCGGGTCCAGGCTGGCATGGGGACCCCTTATCAGAAGAGGACCCCAGGCCAGAGACCAGAGGCTTGGTCCCTCTTGCTCTGCCCTCAGAGAGGTCTCCGAGGGAGGTGGGCAGGTTGGCAGGTGGCCCCAGGGTTCTGGCCCTCCGTGGTCCTGGCTGCTGAGCCCTGA
CircID chr3:52452119|52452509
ORF Type ORF7
Protein Length 115
Nucleotide Length 345
Protein Sequence MWETSGSRLAWGPLIRRGPQARDQRLGPSCSALREVSEGGGQVGRWPQGSGPPWSWLLSPDYCAPQPLNTEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDE
Nucleotide Sequence ATGTGGGAGACCAGCGGGTCCAGGCTGGCATGGGGACCCCTTATCAGAAGAGGACCCCAGGCCAGAGACCAGAGGCTTGGTCCCTCTTGCTCTGCCCTCAGAGAGGTCTCCGAGGGAGGTGGGCAGGTTGGCAGGTGGCCCCAGGGTTCTGGCCCTCCGTGGTCCTGGCTGCTGAGCCCTGACTACTGTGCCCCCCAACCCCTGAACACAGAGTTCAAGGCAGCCTTCGACATCTTCGTGCTGGGCGCTGAGGATGGCTGCATCAGCACCAAGGAGCTGGGCAAGGTGATGAGGATGCTGGGCCAGAACCCCACCCCTGAGGAGCTGCAGGAGATGATCGATGAG
CircID chr3:52452119|52452509
ORF Type ORF8
Protein Length 71
Nucleotide Length 216
Protein Sequence MTEEQKNGENPYHTCGRPAGPGWHGDPLSEEDPRPETRGLVPLALPSERSPREVGRLAGGPRVLALRGPGC
Nucleotide Sequence CTGACAGAAGAGCAGAAAAATGGTGAGAATCCCTATCACACATGTGGGAGACCAGCGGGTCCAGGCTGGCATGGGGACCCCTTATCAGAAGAGGACCCCAGGCCAGAGACCAGAGGCTTGGTCCCTCTTGCTCTGCCCTCAGAGAGGTCTCCGAGGGAGGTGGGCAGGTTGGCAGGTGGCCCCAGGGTTCTGGCCCTCCGTGGTCCTGGCTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
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