CircRNA Information

General Information
circRNA Basic Information
CircID chr3:52503783|52504124
Strand -
CircType exon
Host Gene ENSG00000010327.9;
Algorism CIRI2;
Sequence CTGCCGGCCAGGCCTGGTCAGCATCAACAGCAACGCTTCTGCGGGCTGCTTCGCCTTCTGCTCCCCCTTCTCCTGCGACCGGTCTGCCACTTGCCAGGTGACCGCTGATGGGAAGACCAGGTGAGCACAGGTGCCTGGGAGCAGAGACAGTGGGTTGGGCAAGCGTGCCCTCTGCGGGAAGGCGTGGGGGGTGCGGTGGGGGGGGCCTCAGCCTCCGCCCTGACTGGCTCTCCCTGGGAGCCCAGCTGTGTGTGCAGGGAAAGCGAGGTGGGGGATGGGCGTGCCTGCTACGGACACCTGCTCCACGAGGTGCAGAAGGCCACGCAGACAGGCCGGGTGTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:52503783|52504124 hsa-miR-31-5p 0 0 1
chr3:52503783|52504124 hsa-miR-31-3p 0 0 1
chr3:52503783|52504124 hsa-miR-346 0 0 1
chr3:52503783|52504124 hsa-miR-575 0 1 1
chr3:52503783|52504124 hsa-miR-593-5p 0 0 1
chr3:52503783|52504124 hsa-miR-593-3p 0 0 1
chr3:52503783|52504124 hsa-miR-632 0 0 1
chr3:52503783|52504124 hsa-miR-658 1 0 1
chr3:52503783|52504124 hsa-miR-298 0 1 1
chr3:52503783|52504124 hsa-miR-939-5p 0 0 1
chr3:52503783|52504124 hsa-miR-939-3p 0 0 1
chr3:52503783|52504124 hsa-miR-1178-5p 0 0 1
chr3:52503783|52504124 hsa-miR-1178-3p 0 0 1
chr3:52503783|52504124 hsa-miR-1234-3p 0 0 1
chr3:52503783|52504124 hsa-miR-1237-5p 0 0 1
chr3:52503783|52504124 hsa-miR-1237-3p 0 0 1
chr3:52503783|52504124 hsa-miR-1204 0 1 1
chr3:52503783|52504124 hsa-miR-1267 0 0 1
chr3:52503783|52504124 hsa-miR-1234 0 0 1
chr3:52503783|52504124 hsa-miR-485-5p 0 0 1
chr3:52503783|52504124 hsa-miR-941 0 1 1
chr3:52503783|52504124 hsa-miR-361-3p 0 0 1
chr3:52503783|52504124 hsa-miR-1224-3p 0 1 1
chr3:52503783|52504124 hsa-miR-1207-3p 0 0 1
chr3:52503783|52504124 hsa-miR-767-3p 0 0 1
chr3:52503783|52504124 hsa-miR-628-5p 0 0 1
chr3:52503783|52504124 hsa-miR-1274a 0 0 1
chr3:52503783|52504124 hsa-miR-1280 0 0 1
chr3:52503783|52504124 hsa-miR-544 0 0 1
chr3:52503783|52504124 hsa-miR-923 0 0 1
chr3:52503783|52504124 hsa-miR-507 0 1 0
chr3:52503783|52504124 hsa-miR-663a 1 0 0
chr3:52503783|52504124 hsa-miR-765 1 0 0
chr3:52503783|52504124 hsa-miR-3141 0 1 0
chr3:52503783|52504124 hsa-miR-3154 1 1 0
chr3:52503783|52504124 hsa-miR-3185 1 0 0
chr3:52503783|52504124 hsa-miR-3196 1 0 0
chr3:52503783|52504124 hsa-miR-3197 1 0 0
chr3:52503783|52504124 hsa-miR-4269 0 1 0
chr3:52503783|52504124 hsa-miR-4281 1 0 0
chr3:52503783|52504124 hsa-miR-3665 0 1 0
chr3:52503783|52504124 hsa-miR-4421 0 1 0
chr3:52503783|52504124 hsa-miR-378g 0 1 0
chr3:52503783|52504124 hsa-miR-4468 0 1 0
chr3:52503783|52504124 hsa-miR-4479 1 0 0
chr3:52503783|52504124 hsa-miR-4516 1 1 0
chr3:52503783|52504124 hsa-miR-4673 0 1 0
chr3:52503783|52504124 hsa-miR-4688 1 0 0
chr3:52503783|52504124 hsa-miR-4706 1 0 0
chr3:52503783|52504124 hsa-miR-4739 1 0 0
chr3:52503783|52504124 hsa-miR-5698 1 0 0
chr3:52503783|52504124 hsa-miR-6081 1 1 0
chr3:52503783|52504124 hsa-miR-6090 1 0 0
chr3:52503783|52504124 hsa-miR-6125 1 1 0
chr3:52503783|52504124 hsa-miR-6165 1 1 0
chr3:52503783|52504124 hsa-miR-8073 0 1 0
chr3:52503783|52504124 hsa-miR-9718 0 1 0
chr3:52503783|52504124 hsa-miR-12118 1 0 0
chr3:52503783|52504124 hsa-miR-4433b-3p 1 0 0
chr3:52503783|52504124 hsa-miR-214-5p 0 1 0
chr3:52503783|52504124 hsa-miR-4433a-3p 1 0 0
chr3:52503783|52504124 hsa-miR-6836-3p 1 0 0
chr3:52503783|52504124 hsa-miR-6894-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6892-3p 1 0 0
chr3:52503783|52504124 hsa-miR-182-5p 0 1 0
chr3:52503783|52504124 hsa-miR-25-5p 0 1 0
chr3:52503783|52504124 hsa-miR-6089 1 0 0
chr3:52503783|52504124 hsa-miR-6880-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6746-5p 1 0 0
chr3:52503783|52504124 hsa-miR-4722-5p 1 0 0
chr3:52503783|52504124 hsa-miR-7160-5p 0 1 0
chr3:52503783|52504124 hsa-miR-296-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6727-5p 0 1 0
chr3:52503783|52504124 hsa-miR-3189-5p 1 0 0
chr3:52503783|52504124 hsa-miR-4728-3p 0 1 0
chr3:52503783|52504124 hsa-miR-7108-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6716-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6805-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6798-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6770-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6760-5p 1 0 0
chr3:52503783|52504124 hsa-miR-3130-3p 0 1 0
chr3:52503783|52504124 hsa-miR-2467-3p 0 1 0
chr3:52503783|52504124 hsa-miR-6782-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6765-3p 1 1 0
chr3:52503783|52504124 hsa-miR-6821-5p 1 0 0
chr3:52503783|52504124 hsa-miR-4713-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6772-3p 0 1 0
chr3:52503783|52504124 hsa-miR-7109-5p 1 0 0
chr3:52503783|52504124 hsa-miR-4763-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6763-3p 1 0 0
chr3:52503783|52504124 hsa-miR-4783-5p 1 1 0
chr3:52503783|52504124 hsa-miR-6818-3p 0 1 0
chr3:52503783|52504124 hsa-miR-4446-5p 0 1 0
chr3:52503783|52504124 hsa-miR-937-5p 1 0 0
chr3:52503783|52504124 hsa-miR-5010-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6870-3p 1 1 0
chr3:52503783|52504124 hsa-miR-3120-5p 1 1 0
chr3:52503783|52504124 hsa-miR-4687-5p 1 0 0
chr3:52503783|52504124 hsa-miR-1911-3p 0 1 0
chr3:52503783|52504124 hsa-miR-6804-3p 0 1 0
chr3:52503783|52504124 hsa-miR-6828-3p 0 1 0
chr3:52503783|52504124 hsa-miR-4758-3p 0 1 0
chr3:52503783|52504124 hsa-miR-6872-3p 0 1 0
chr3:52503783|52504124 hsa-miR-7113-5p 0 1 0
chr3:52503783|52504124 hsa-miR-328-3p 1 0 0
chr3:52503783|52504124 hsa-miR-4746-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6859-3p 1 0 0
chr3:52503783|52504124 hsa-miR-4649-3p 1 1 0
chr3:52503783|52504124 hsa-miR-6760-3p 0 1 0
chr3:52503783|52504124 hsa-miR-1249-3p 1 0 0
chr3:52503783|52504124 hsa-miR-6729-3p 0 1 0
chr3:52503783|52504124 hsa-miR-6750-3p 1 1 0
chr3:52503783|52504124 hsa-miR-4520-5p 0 1 0
chr3:52503783|52504124 hsa-miR-4763-3p 1 0 0
chr3:52503783|52504124 hsa-miR-6870-5p 1 1 0
chr3:52503783|52504124 hsa-miR-1343-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6743-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6754-5p 0 1 0
chr3:52503783|52504124 hsa-miR-11181-3p 1 0 0
chr3:52503783|52504124 hsa-miR-1249-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6722-3p 1 0 0
chr3:52503783|52504124 hsa-miR-7111-5p 1 1 0
chr3:52503783|52504124 hsa-miR-1915-3p 0 1 0
chr3:52503783|52504124 hsa-miR-3620-5p 1 0 0
chr3:52503783|52504124 hsa-miR-4728-5p 1 0 0
chr3:52503783|52504124 hsa-miR-5196-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6780b-5p 1 0 0
chr3:52503783|52504124 hsa-miR-10526-3p 1 0 0
chr3:52503783|52504124 hsa-miR-328-5p 1 1 0
chr3:52503783|52504124 hsa-miR-6794-5p 1 1 0
chr3:52503783|52504124 hsa-miR-6795-5p 1 1 0
chr3:52503783|52504124 hsa-miR-6858-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6887-5p 1 1 0
chr3:52503783|52504124 hsa-miR-4723-5p 1 1 0
chr3:52503783|52504124 hsa-miR-6885-5p 1 0 0
chr3:52503783|52504124 hsa-miR-6731-5p 0 1 0
chr3:52503783|52504124 hsa-miR-5008-3p 1 1 0
chr3:52503783|52504124 hsa-miR-6891-5p 1 0 0
chr3:52503783|52504124 hsa-miR-4667-5p 0 1 0
chr3:52503783|52504124 hsa-miR-6792-3p 1 0 0
chr3:52503783|52504124 hsa-miR-10400-3p 1 1 0
chr3:52503783|52504124 hsa-miR-5581-5p 0 1 0
chr3:52503783|52504124 hsa-miR-6884-5p 0 1 0
chr3:52503783|52504124 hsa-miR-6876-3p 1 1 0
chr3:52503783|52504124 hsa-miR-6764-5p 0 1 0
chr3:52503783|52504124 hsa-miR-6715b-5p 0 1 0
chr3:52503783|52504124 hsa-miR-6737-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:52503783|52504124
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence LPARPGQHQQQRFCGLLRLLLPLLLRPVCHLPGDR
Nucleotide Sequence CTGCCGGCCAGGCCTGGTCAGCATCAACAGCAACGCTTCTGCGGGCTGCTTCGCCTTCTGCTCCCCCTTCTCCTGCGACCGGTCTGCCACTTGCCAGGTGACCGCTGA
CircID chr3:52503783|52504124
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MREGVGGAVGGASASALTGSPWEPSCVCRESEVGDGRACYGHLLHEVQKATQTGRVF
Nucleotide Sequence CTGCGGGAAGGCGTGGGGGGTGCGGTGGGGGGGGCCTCAGCCTCCGCCCTGACTGGCTCTCCCTGGGAGCCCAGCTGTGTGTGCAGGGAAAGCGAGGTGGGGGATGGGCGTGCCTGCTACGGACACCTGCTCCACGAGGTGCAGAAGGCCACGCAGACAGGCCGGGTGTTC
CircID chr3:52503783|52504124
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MVSINSNASAGCFAFCSPFSCDRSATCQVTADGKTR
Nucleotide Sequence CTGGTCAGCATCAACAGCAACGCTTCTGCGGGCTGCTTCGCCTTCTGCTCCCCCTTCTCCTGCGACCGGTCTGCCACTTGCCAGGTGACCGCTGATGGGAAGACCAGGTGA
CircID chr3:52503783|52504124
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MALPGSPAVCAGKARWGMGVPATDTCSTRCRRPRRQAGC
Nucleotide Sequence CTGGCTCTCCCTGGGAGCCCAGCTGTGTGTGCAGGGAAAGCGAGGTGGGGGATGGGCGTGCCTGCTACGGACACCTGCTCCACGAGGTGCAGAAGGCCACGCAGACAGGCCGGGTGT
CircID chr3:52503783|52504124
ORF Type ORF5
Protein Length 79
Nucleotide Length 237
Protein Sequence MMGRPGEHRCLGAETVGWASVPSAGRRGGCGGGGLSLRPDWLSLGAQLCVQGKRGGGWACLLRTPAPRGAEGHADRPGV
Nucleotide Sequence CTGATGGGAAGACCAGGTGAGCACAGGTGCCTGGGAGCAGAGACAGTGGGTTGGGCAAGCGTGCCCTCTGCGGGAAGGCGTGGGGGGTGCGGTGGGGGGGGCCTCAGCCTCCGCCCTGACTGGCTCTCCCTGGGAGCCCAGCTGTGTGTGCAGGGAAAGCGAGGTGGGGGATGGGCGTGCCTGCTACGGACACCTGCTCCACGAGGTGCAGAAGGCCACGCAGACAGGCCGGGTGTT
CircID chr3:52503783|52504124
ORF Type ORF6
Protein Length 39
Nucleotide Length 120
Protein Sequence MRGLLHLVEQVSVAGTPIPHLAFPAHTAGLPGRASQGGG
Nucleotide Sequence CTGCGTGGCCTTCTGCACCTCGTGGAGCAGGTGTCCGTAGCAGGCACGCCCATCCCCCACCTCGCTTTCCCTGCACACACAGCTGGGCTCCCAGGGAGAGCCAGTCAGGGCGGAGGCTGA
CircID chr3:52503783|52504124
ORF Type ORF7
Protein Length 54
Nucleotide Length 162
Protein Sequence MPNPLSLLPGTCAHLVFPSAVTWQVADRSQEKGEQKAKQPAEALLLMLTRPGRQ
Nucleotide Sequence TTGCCCAACCCACTGTCTCTGCTCCCAGGCACCTGTGCTCACCTGGTCTTCCCATCAGCGGTCACCTGGCAAGTGGCAGACCGGTCGCAGGAGAAGGGGGAGCAGAAGGCGAAGCAGCCCGCAGAAGCGTTGCTGTTGATGCTGACCAGGCCTGGCCGGCAG
CircID chr3:52503783|52504124
ORF Type ORF8
Protein Length 77
Nucleotide Length 234
Protein Sequence MHTQLGSQGEPVRAEAEAPPTAPPTPSRRGHACPTHCLCSQAPVLTWSSHQRSPGKWQTGRRRRGSRRRSSPQKRCC
Nucleotide Sequence CTGCACACACAGCTGGGCTCCCAGGGAGAGCCAGTCAGGGCGGAGGCTGAGGCCCCCCCCACCGCACCCCCCACGCCTTCCCGCAGAGGGCACGCTTGCCCAACCCACTGTCTCTGCTCCCAGGCACCTGTGCTCACCTGGTCTTCCCATCAGCGGTCACCTGGCAAGTGGCAGACCGGTCGCAGGAGAAGGGGGAGCAGAAGGCGAAGCAGCCCGCAGAAGCGTTGCTGTTGA
CircID chr3:52503783|52504124
ORF Type ORF9
Protein Length 110
Nucleotide Length 330
Protein Sequence MSAWPSAPRGAGVRSRHAHPPPRFPCTHSWAPRESQSGRRLRPPPPHPPRLPAEGTLAQPTVSAPRHLCSPGLPISGHLASGRPVAGEGGAEGEAARRSVAVDADQAWPA
Nucleotide Sequence CTGTCTGCGTGGCCTTCTGCACCTCGTGGAGCAGGTGTCCGTAGCAGGCACGCCCATCCCCCACCTCGCTTTCCCTGCACACACAGCTGGGCTCCCAGGGAGAGCCAGTCAGGGCGGAGGCTGAGGCCCCCCCCACCGCACCCCCCACGCCTTCCCGCAGAGGGCACGCTTGCCCAACCCACTGTCTCTGCTCCCAGGCACCTGTGCTCACCTGGTCTTCCCATCAGCGGTCACCTGGCAAGTGGCAGACCGGTCGCAGGAGAAGGGGGAGCAGAAGGCGAAGCAGCCCGCAGAAGCGTTGCTGTTGATGCTGACCAGGCCTGGCCGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab