CircRNA Information

General Information
circRNA Basic Information
CircID chr3:52509870|52510046
Strand +
CircType exon
Host Gene ENSG00000010327.9;
Algorism CIRI2;
Sequence CCTCCTGGCTAACACAGCGGGCATGCAGGTGGCAGTGCTGGGCCAGCCCTGTGGGCCCACAGTCCCCCATGGACTCGTTGCAGAACCGGCCACTGAAGCCAGGGGCACACGTGCCCTGCTGGCACACCCCCCCACTGCCTGGGCGGTTGTCGCAGAGACCATGGACACAGCCGCAGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:52509870|52510046 hsa-miR-34a-5p 0 0 1
chr3:52509870|52510046 hsa-miR-34a-3p 0 0 1
chr3:52509870|52510046 hsa-miR-214-5p 0 0 1
chr3:52509870|52510046 hsa-miR-214-3p 0 0 1
chr3:52509870|52510046 hsa-miR-449a 0 0 1
chr3:52509870|52510046 hsa-miR-575 0 0 1
chr3:52509870|52510046 hsa-miR-593-5p 0 0 1
chr3:52509870|52510046 hsa-miR-593-3p 0 0 1
chr3:52509870|52510046 hsa-miR-625-5p 0 0 1
chr3:52509870|52510046 hsa-miR-625-3p 0 0 1
chr3:52509870|52510046 hsa-miR-449b-5p 0 0 1
chr3:52509870|52510046 hsa-miR-449b-3p 0 0 1
chr3:52509870|52510046 hsa-miR-891a-5p 0 0 1
chr3:52509870|52510046 hsa-miR-891a-3p 0 0 1
chr3:52509870|52510046 hsa-miR-665 0 0 1
chr3:52509870|52510046 hsa-miR-1227-5p 0 0 1
chr3:52509870|52510046 hsa-miR-1227-3p 0 0 1
chr3:52509870|52510046 hsa-miR-1202 0 0 1
chr3:52509870|52510046 hsa-miR-1275 0 0 1
chr3:52509870|52510046 hsa-miR-296-5p 0 0 1
chr3:52509870|52510046 hsa-miR-671-3p 0 1 1
chr3:52509870|52510046 hsa-miR-331-3p 0 0 1
chr3:52509870|52510046 hsa-miR-34c-5p 0 0 1
chr3:52509870|52510046 hsa-miR-220c 0 0 1
chr3:52509870|52510046 hsa-miR-544 0 0 1
chr3:52509870|52510046 hsa-miR-608 1 0 0
chr3:52509870|52510046 hsa-miR-892a 1 0 0
chr3:52509870|52510046 hsa-miR-1538 1 0 0
chr3:52509870|52510046 hsa-miR-4296 0 1 0
chr3:52509870|52510046 hsa-miR-4318 0 1 0
chr3:52509870|52510046 hsa-miR-4322 0 1 0
chr3:52509870|52510046 hsa-miR-4265 0 1 0
chr3:52509870|52510046 hsa-miR-4498 0 1 0
chr3:52509870|52510046 hsa-miR-4525 1 0 0
chr3:52509870|52510046 hsa-miR-4530 0 1 0
chr3:52509870|52510046 hsa-miR-4669 1 0 0
chr3:52509870|52510046 hsa-miR-4673 1 1 0
chr3:52509870|52510046 hsa-miR-4692 0 1 0
chr3:52509870|52510046 hsa-miR-4734 1 0 0
chr3:52509870|52510046 hsa-miR-5693 0 1 0
chr3:52509870|52510046 hsa-miR-7974 1 1 0
chr3:52509870|52510046 hsa-miR-11400 1 1 0
chr3:52509870|52510046 hsa-miR-29b-1-5p 0 1 0
chr3:52509870|52510046 hsa-miR-134-3p 0 1 0
chr3:52509870|52510046 hsa-miR-6747-5p 0 1 0
chr3:52509870|52510046 hsa-miR-6825-5p 1 0 0
chr3:52509870|52510046 hsa-miR-6799-5p 1 0 0
chr3:52509870|52510046 hsa-miR-6089 1 0 0
chr3:52509870|52510046 hsa-miR-3677-5p 0 1 0
chr3:52509870|52510046 hsa-miR-4474-3p 1 0 0
chr3:52509870|52510046 hsa-miR-6842-3p 1 0 0
chr3:52509870|52510046 hsa-miR-6732-5p 1 0 0
chr3:52509870|52510046 hsa-miR-6772-3p 0 1 0
chr3:52509870|52510046 hsa-miR-4707-3p 1 0 0
chr3:52509870|52510046 hsa-miR-3944-3p 1 0 0
chr3:52509870|52510046 hsa-miR-4715-3p 0 1 0
chr3:52509870|52510046 hsa-miR-1228-5p 1 0 0
chr3:52509870|52510046 hsa-miR-4787-5p 1 0 0
chr3:52509870|52510046 hsa-miR-4446-3p 0 1 0
chr3:52509870|52510046 hsa-miR-194-3p 0 1 0
chr3:52509870|52510046 hsa-miR-1184 0 1 0
chr3:52509870|52510046 hsa-miR-7112-5p 1 0 0
chr3:52509870|52510046 hsa-miR-383-3p 0 1 0
chr3:52509870|52510046 hsa-miR-6773-3p 0 1 0
chr3:52509870|52510046 hsa-miR-6770-3p 1 0 0
chr3:52509870|52510046 hsa-miR-3152-3p 0 1 0
chr3:52509870|52510046 hsa-miR-1233-5p 1 0 0
chr3:52509870|52510046 hsa-miR-4763-3p 1 0 0
chr3:52509870|52510046 hsa-miR-5001-5p 0 1 0
chr3:52509870|52510046 hsa-miR-6726-5p 1 0 0
chr3:52509870|52510046 hsa-miR-6752-5p 1 1 0
chr3:52509870|52510046 hsa-miR-6803-5p 1 0 0
chr3:52509870|52510046 hsa-miR-7110-5p 0 1 0
chr3:52509870|52510046 hsa-miR-6836-5p 0 1 0
chr3:52509870|52510046 hsa-miR-328-5p 1 0 0
chr3:52509870|52510046 hsa-miR-449c-5p 1 1 0
chr3:52509870|52510046 hsa-miR-6794-5p 1 0 0
chr3:52509870|52510046 hsa-miR-6848-5p 1 0 0
chr3:52509870|52510046 hsa-miR-6885-5p 1 0 0
chr3:52509870|52510046 hsa-miR-939-5p 1 0 0
chr3:52509870|52510046 hsa-miR-4665-5p 0 1 0
chr3:52509870|52510046 hsa-miR-4472 0 1 0
chr3:52509870|52510046 hsa-miR-6724-5p 1 1 0
chr3:52509870|52510046 hsa-miR-6848-3p 0 1 0
chr3:52509870|52510046 hsa-miR-3619-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr3:52509870|52510046
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MANTAGMQVAVLGQPCGPTVPHGLVAEPATEARGTRALLAHPPTAWAVVAETMDTAA
Nucleotide Sequence CTGGCTAACACAGCGGGCATGCAGGTGGCAGTGCTGGGCCAGCCCTGTGGGCCCACAGTCCCCCATGGACTCGTTGCAGAACCGGCCACTGAAGCCAGGGGCACACGTGCCCTGCTGGCACACCCCCCCACTGCCTGGGCGGTTGTCGCAGAGACCATGGACACAGCCGCA

CircID chr3:52509870|52510046
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MDSLQNRPLKPGAHVPCWHTPPLPGRLSQRPWTQPQ
Nucleotide Sequence ATGGACTCGTTGCAGAACCGGCCACTGAAGCCAGGGGCACACGTGCCCTGCTGGCACACCCCCCCACTGCCTGGGCGGTTGTCGCAGAGACCATGGACACAGCCGCAG

CircID chr3:52509870|52510046
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MVSATTAQAVGGCASRARVPLASVAGSATSPWGTVGPQGWPSTATCMPAVLARR
Nucleotide Sequence ATGGTCTCTGCGACAACCGCCCAGGCAGTGGGGGGGTGTGCCAGCAGGGCACGTGTGCCCCTGGCTTCAGTGGCCGGTTCTGCAACGAGTCCATGGGGGACTGTGGGCCCACAGGGCTGGCCCAGCACTGCCACCTGCATGCCCGCTGTGTTAGCCAGGAGG

CircID chr3:52509870|52510046
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence LRLCPWSLRQPPRQWGGVPAGHVCPWLQWPVLQRVHGGLWAHRAGPALPPACPLC
Nucleotide Sequence CTGCGGCTGTGTCCATGGTCTCTGCGACAACCGCCCAGGCAGTGGGGGGGTGTGCCAGCAGGGCACGTGTGCCCCTGGCTTCAGTGGCCGGTTCTGCAACGAGTCCATGGGGGACTGTGGGCCCACAGGGCTGGCCCAGCACTGCCACCTGCATGCCCGCTGTGTTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites