CircRNA Information

General Information
circRNA Basic Information
CircID chr3:52693640|52693775
Strand +
CircType exon
Host Gene ENSG00000163938.15;
Algorism CIRI2;
Sequence TGTCTTTGTCATCCTCCCTCTCCTCCTGCTTCCTTTCTTTCCGTTTTGGCAATTCTTCATGTATGTCCTTTTCTTCTATTATTCCATTTGTCAGACCGGAAGACTGGAAAAGGATGCTATTGGCCAAATGAGGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:52693640|52693775 hsa-miR-191-5p 0 0 1
chr3:52693640|52693775 hsa-miR-191-3p 0 0 1
chr3:52693640|52693775 hsa-miR-579-5p 0 0 1
chr3:52693640|52693775 hsa-miR-579-3p 0 0 1
chr3:52693640|52693775 hsa-miR-588 0 0 1
chr3:52693640|52693775 hsa-miR-765 1 1 1
chr3:52693640|52693775 hsa-miR-1321 0 0 1
chr3:52693640|52693775 hsa-miR-145-5p 0 0 1
chr3:52693640|52693775 hsa-miR-501-5p 0 0 1
chr3:52693640|52693775 hsa-miR-650 1 0 0
chr3:52693640|52693775 hsa-miR-665 1 0 0
chr3:52693640|52693775 hsa-miR-1275 1 0 0
chr3:52693640|52693775 hsa-miR-3125 1 0 0
chr3:52693640|52693775 hsa-miR-3132 1 0 0
chr3:52693640|52693775 hsa-miR-3154 1 1 0
chr3:52693640|52693775 hsa-miR-3175 1 0 0
chr3:52693640|52693775 hsa-miR-4306 0 1 0
chr3:52693640|52693775 hsa-miR-3612 1 0 0
chr3:52693640|52693775 hsa-miR-3652 1 0 0
chr3:52693640|52693775 hsa-miR-4428 1 0 0
chr3:52693640|52693775 hsa-miR-4430 1 0 0
chr3:52693640|52693775 hsa-miR-4468 1 0 0
chr3:52693640|52693775 hsa-miR-4476 1 0 0
chr3:52693640|52693775 hsa-miR-2392 1 0 0
chr3:52693640|52693775 hsa-miR-4510 0 1 0
chr3:52693640|52693775 hsa-miR-4514 1 0 0
chr3:52693640|52693775 hsa-miR-4533 1 0 0
chr3:52693640|52693775 hsa-miR-4644 1 0 0
chr3:52693640|52693775 hsa-miR-4651 1 0 0
chr3:52693640|52693775 hsa-miR-4689 1 0 0
chr3:52693640|52693775 hsa-miR-4698 0 1 0
chr3:52693640|52693775 hsa-miR-4706 1 0 0
chr3:52693640|52693775 hsa-miR-4710 1 0 0
chr3:52693640|52693775 hsa-miR-4739 1 1 0
chr3:52693640|52693775 hsa-miR-4784 1 0 0
chr3:52693640|52693775 hsa-miR-6088 1 0 0
chr3:52693640|52693775 hsa-miR-6090 1 0 0
chr3:52693640|52693775 hsa-miR-6133 1 1 0
chr3:52693640|52693775 hsa-miR-6165 1 1 0
chr3:52693640|52693775 hsa-miR-8085 1 0 0
chr3:52693640|52693775 hsa-miR-12114 1 0 0
chr3:52693640|52693775 hsa-miR-12118 1 0 0
chr3:52693640|52693775 hsa-miR-12120 1 0 0
chr3:52693640|52693775 hsa-miR-4433b-3p 1 0 0
chr3:52693640|52693775 hsa-miR-6734-5p 1 0 0
chr3:52693640|52693775 hsa-miR-4433a-3p 1 0 0
chr3:52693640|52693775 hsa-miR-671-5p 1 0 0
chr3:52693640|52693775 hsa-miR-3150a-3p 1 0 0
chr3:52693640|52693775 hsa-miR-7106-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6825-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6894-5p 1 1 0
chr3:52693640|52693775 hsa-miR-6799-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6510-5p 1 1 0
chr3:52693640|52693775 hsa-miR-6089 1 0 0
chr3:52693640|52693775 hsa-miR-6873-5p 0 1 0
chr3:52693640|52693775 hsa-miR-4695-5p 1 1 0
chr3:52693640|52693775 hsa-miR-6746-5p 1 0 0
chr3:52693640|52693775 hsa-miR-4722-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6730-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6732-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6798-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6760-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6782-5p 1 0 0
chr3:52693640|52693775 hsa-miR-3150b-3p 1 0 0
chr3:52693640|52693775 hsa-miR-185-5p 0 1 0
chr3:52693640|52693775 hsa-miR-885-3p 1 0 0
chr3:52693640|52693775 hsa-miR-6771-5p 1 0 0
chr3:52693640|52693775 hsa-miR-4690-5p 1 0 0
chr3:52693640|52693775 hsa-miR-149-3p 1 0 0
chr3:52693640|52693775 hsa-miR-6830-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6824-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6828-5p 1 1 0
chr3:52693640|52693775 hsa-miR-5010-5p 0 1 0
chr3:52693640|52693775 hsa-miR-423-5p 1 0 0
chr3:52693640|52693775 hsa-miR-4664-3p 0 1 0
chr3:52693640|52693775 hsa-miR-6792-5p 1 0 0
chr3:52693640|52693775 hsa-miR-1207-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6787-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6865-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6870-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6893-5p 1 0 0
chr3:52693640|52693775 hsa-miR-1343-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6726-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6743-5p 1 0 0
chr3:52693640|52693775 hsa-miR-11181-3p 1 0 0
chr3:52693640|52693775 hsa-miR-1249-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6722-3p 1 0 0
chr3:52693640|52693775 hsa-miR-6779-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6780a-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6797-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6808-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6879-5p 1 0 0
chr3:52693640|52693775 hsa-miR-7111-5p 1 0 0
chr3:52693640|52693775 hsa-miR-4728-5p 1 0 0
chr3:52693640|52693775 hsa-miR-5196-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6780b-5p 1 0 0
chr3:52693640|52693775 hsa-miR-1909-3p 1 0 0
chr3:52693640|52693775 hsa-miR-4632-5p 1 0 0
chr3:52693640|52693775 hsa-miR-4649-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6729-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6794-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6883-5p 1 0 0
chr3:52693640|52693775 hsa-miR-4723-5p 1 0 0
chr3:52693640|52693775 hsa-miR-1910-3p 1 0 0
chr3:52693640|52693775 hsa-miR-6511a-5p 1 0 0
chr3:52693640|52693775 hsa-miR-30c-1-3p 1 0 0
chr3:52693640|52693775 hsa-miR-6731-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6758-5p 1 1 0
chr3:52693640|52693775 hsa-miR-3173-3p 1 0 0
chr3:52693640|52693775 hsa-miR-6891-5p 1 0 0
chr3:52693640|52693775 hsa-miR-4716-3p 1 0 0
chr3:52693640|52693775 hsa-miR-6785-5p 1 0 0
chr3:52693640|52693775 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:52693640|52693775
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MAILHVCPFLLLFHLSDRKTGKGCYWPNEG
Nucleotide Sequence TTGGCAATTCTTCATGTATGTCCTTTTCTTCTATTATTCCATTTGTCAGACCGGAAGACTGGAAAAGGATGCTATTGGCCAAATGAGGGC
CircID chr3:52693640|52693775
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MLPFFPFWQFFMYVLFFYYSICQTGRLEKDAIGQMRA
Nucleotide Sequence CTGCTTCCTTTCTTTCCGTTTTGGCAATTCTTCATGTATGTCCTTTTCTTCTATTATTCCATTTGTCAGACCGGAAGACTGGAAAAGGATGCTATTGGCCAAATGAGGGCC
CircID chr3:52693640|52693775
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MSSSLSSCFLSFRFGNSSCMSFSSIIPFVRPEDWKRMLLAK
Nucleotide Sequence TTGTCATCCTCCCTCTCCTCCTGCTTCCTTTCTTTCCGTTTTGGCAATTCTTCATGTATGTCCTTTTCTTCTATTATTCCATTTGTCAGACCGGAAGACTGGAAAAGGATGCTATTGGCCAAATGA
CircID chr3:52693640|52693775
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MANSILFQSSGLTNGIIEEKDIHEELPKRKERKQEEREDDKD
Nucleotide Sequence TTGGCCAATAGCATCCTTTTCCAGTCTTCCGGTCTGACAAATGGAATAATAGAAGAAAAGGACATACATGAAGAATTGCCAAAACGGAAAGAAAGGAAGCAGGAGGAGAGGGAGGATGACAAAGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab