CircRNA Information

General Information
circRNA Basic Information
CircID chr3:53186341|53186548
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TGAGGGCCACTGGGGCCAAGCCCCAACAGGAAACAGCAGGGACAGGCCCTGGCTGAGGTGGACGACTCTGCCCTGGGAGGCATGAGGGGGGAAAGCATGGCCCTGCCTTAAGTGGCCTGAAGGGGAGACACAGCCCTGACTGAGGGGGGCTGAGGAGCTGTGGGACATGGCTGTGGCATGGGGTGGTGACGGCAGGAGGCCCGGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:53186341|53186548 hsa-miR-197-5p 0 0 1
chr3:53186341|53186548 hsa-miR-197-3p 0 0 1
chr3:53186341|53186548 hsa-miR-370-5p 0 0 1
chr3:53186341|53186548 hsa-miR-370-3p 0 0 1
chr3:53186341|53186548 hsa-miR-328-5p 0 0 1
chr3:53186341|53186548 hsa-miR-328-3p 0 0 1
chr3:53186341|53186548 hsa-miR-506-5p 0 0 1
chr3:53186341|53186548 hsa-miR-506-3p 0 0 1
chr3:53186341|53186548 hsa-miR-940 1 1 1
chr3:53186341|53186548 hsa-miR-663b 0 0 1
chr3:53186341|53186548 hsa-miR-1291 0 0 1
chr3:53186341|53186548 hsa-miR-188-3p 0 0 1
chr3:53186341|53186548 hsa-miR-1207-5p 0 0 1
chr3:53186341|53186548 hsa-miR-220b 0 0 1
chr3:53186341|53186548 hsa-miR-124 0 0 1
chr3:53186341|53186548 hsa-miR-661 1 1 0
chr3:53186341|53186548 hsa-miR-762 1 0 0
chr3:53186341|53186548 hsa-miR-1181 1 0 0
chr3:53186341|53186548 hsa-miR-1203 1 0 0
chr3:53186341|53186548 hsa-miR-1538 1 1 0
chr3:53186341|53186548 hsa-miR-1976 1 1 0
chr3:53186341|53186548 hsa-miR-4260 0 1 0
chr3:53186341|53186548 hsa-miR-3714 0 1 0
chr3:53186341|53186548 hsa-miR-4498 1 0 0
chr3:53186341|53186548 hsa-miR-4512 1 1 0
chr3:53186341|53186548 hsa-miR-4641 1 1 0
chr3:53186341|53186548 hsa-miR-4675 0 1 0
chr3:53186341|53186548 hsa-miR-4734 1 0 0
chr3:53186341|53186548 hsa-miR-4741 1 0 0
chr3:53186341|53186548 hsa-miR-5090 1 0 0
chr3:53186341|53186548 hsa-miR-5193 1 0 0
chr3:53186341|53186548 hsa-miR-5693 0 1 0
chr3:53186341|53186548 hsa-miR-7974 0 1 0
chr3:53186341|53186548 hsa-miR-6749-3p 1 0 0
chr3:53186341|53186548 hsa-miR-214-5p 0 1 0
chr3:53186341|53186548 hsa-miR-6879-3p 1 0 0
chr3:53186341|53186548 hsa-miR-3157-5p 0 1 0
chr3:53186341|53186548 hsa-miR-6836-3p 0 1 0
chr3:53186341|53186548 hsa-miR-766-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6089 1 0 0
chr3:53186341|53186548 hsa-miR-6845-3p 1 0 0
chr3:53186341|53186548 hsa-miR-185-3p 0 1 0
chr3:53186341|53186548 hsa-miR-4655-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6735-3p 1 1 0
chr3:53186341|53186548 hsa-miR-4436b-5p 1 1 0
chr3:53186341|53186548 hsa-miR-939-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6753-5p 1 0 0
chr3:53186341|53186548 hsa-miR-3127-5p 0 1 0
chr3:53186341|53186548 hsa-miR-7113-3p 1 0 0
chr3:53186341|53186548 hsa-miR-3679-3p 0 1 0
chr3:53186341|53186548 hsa-miR-6749-5p 1 0 0
chr3:53186341|53186548 hsa-miR-4667-3p 0 1 0
chr3:53186341|53186548 hsa-miR-6736-3p 1 1 0
chr3:53186341|53186548 hsa-miR-6824-5p 1 0 0
chr3:53186341|53186548 hsa-miR-7112-5p 1 0 0
chr3:53186341|53186548 hsa-miR-3922-5p 1 0 0
chr3:53186341|53186548 hsa-miR-1237-3p 1 0 0
chr3:53186341|53186548 hsa-miR-1236-3p 1 0 0
chr3:53186341|53186548 hsa-miR-7106-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6872-3p 1 1 0
chr3:53186341|53186548 hsa-miR-6508-3p 0 1 0
chr3:53186341|53186548 hsa-miR-3160-5p 1 0 0
chr3:53186341|53186548 hsa-miR-2277-5p 1 0 0
chr3:53186341|53186548 hsa-miR-6748-3p 0 1 0
chr3:53186341|53186548 hsa-miR-4433a-5p 1 0 0
chr3:53186341|53186548 hsa-miR-1229-3p 1 0 0
chr3:53186341|53186548 hsa-miR-4717-5p 1 1 0
chr3:53186341|53186548 hsa-miR-4433b-5p 0 1 0
chr3:53186341|53186548 hsa-miR-5581-3p 1 0 0
chr3:53186341|53186548 hsa-miR-4716-5p 1 1 0
chr3:53186341|53186548 hsa-miR-4763-3p 1 1 0
chr3:53186341|53186548 hsa-miR-6774-5p 1 0 0
chr3:53186341|53186548 hsa-miR-6808-5p 0 1 0
chr3:53186341|53186548 hsa-miR-3127-3p 0 1 0
chr3:53186341|53186548 hsa-miR-1915-3p 0 1 0
chr3:53186341|53186548 hsa-miR-6836-5p 0 1 0
chr3:53186341|53186548 hsa-miR-4685-5p 1 1 0
chr3:53186341|53186548 hsa-miR-6735-5p 1 1 0
chr3:53186341|53186548 hsa-miR-1266-5p 1 0 0
chr3:53186341|53186548 hsa-miR-7843-5p 1 1 0
chr3:53186341|53186548 hsa-miR-6791-3p 0 1 0
chr3:53186341|53186548 hsa-miR-6753-3p 1 1 0
chr3:53186341|53186548 hsa-miR-7107-3p 0 1 0
chr3:53186341|53186548 hsa-miR-4722-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6727-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6893-3p 1 1 0
chr3:53186341|53186548 hsa-miR-4757-5p 0 1 0
chr3:53186341|53186548 hsa-miR-6756-3p 0 1 0
chr3:53186341|53186548 hsa-miR-6784-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6810-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6829-3p 1 1 0
chr3:53186341|53186548 hsa-miR-6837-5p 1 1 0
chr3:53186341|53186548 hsa-miR-6775-3p 1 0 0
chr3:53186341|53186548 hsa-miR-10392-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6511b-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6744-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6781-3p 1 0 0
chr3:53186341|53186548 hsa-miR-6764-5p 0 1 0
chr3:53186341|53186548 hsa-miR-6834-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:53186341|53186548
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MGPSPNRKQQGQALAEVDDSALGGMRGESMALP
Nucleotide Sequence CTGGGGCCAAGCCCCAACAGGAAACAGCAGGGACAGGCCCTGGCTGAGGTGGACGACTCTGCCCTGGGAGGCATGAGGGGGGAAAGCATGGCCCTGCCTTAA
CircID chr3:53186341|53186548
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MCLPFRPLKAGPCFPPSCLPGQSRPPQPGPVPAVSCWGLAPVAL
Nucleotide Sequence CTGTGTCTCCCCTTCAGGCCACTTAAGGCAGGGCCATGCTTTCCCCCCTCATGCCTCCCAGGGCAGAGTCGTCCACCTCAGCCAGGGCCTGTCCCTGCTGTTTCCTGTTGGGGCTTGGCCCCAGTGGCCCTC
CircID chr3:53186341|53186548
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MPSPPHATAMSHSSSAPLSQGCVSPSGHLRQGHAFPPHASQGRVVHLSQGLSLLFPVGAWPQWPS
Nucleotide Sequence CTGCCGTCACCACCCCATGCCACAGCCATGTCCCACAGCTCCTCAGCCCCCCTCAGTCAGGGCTGTGTCTCCCCTTCAGGCCACTTAAGGCAGGGCCATGCTTTCCCCCCTCATGCCTCCCAGGGCAGAGTCGTCCACCTCAGCCAGGGCCTGTCCCTGCTGTTTCCTGTTGGGGCTTGGCCCCAGTGGCCCTCA
CircID chr3:53186341|53186548
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MLSPLMPPRAESSTSARACPCCFLLGLGPSGP
Nucleotide Sequence ATGCTTTCCCCCCTCATGCCTCCCAGGGCAGAGTCGTCCACCTCAGCCAGGGCCTGTCCCTGCTGTTTCCTGTTGGGGCTTGGCCCCAGTGGCCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab