CircRNA Information

General Information
circRNA Basic Information
CircID chr3:53224977|53225194
Strand -
CircType exon
Host Gene ENSG00000163931.14;
Algorism CIRI2;
Sequence CTAGGAACAGCAGAGCAGGTCGGGGCTGGAGCTTGGGACTGCAGAATTCTGTGTGACATCAGAAGCTCCTGGGCCAGTTGTCACATGGAGTCCCAGGCCCCATTGGCAAGACCCAGAAATCTGCATTTTAACAAGTTGAGGGGGACAGTTCCACACTTGGGATTGAGGACCTCTCATGCCATCCTGAGGGTCCCTTTTCCCCCAGGACGAAGGCTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:53224977|53225194 hsa-miR-377-5p 0 0 1
chr3:53224977|53225194 hsa-miR-377-3p 0 0 1
chr3:53224977|53225194 hsa-miR-384 0 0 1
chr3:53224977|53225194 hsa-miR-431-5p 0 0 1
chr3:53224977|53225194 hsa-miR-431-3p 0 0 1
chr3:53224977|53225194 hsa-miR-193b-5p 0 0 1
chr3:53224977|53225194 hsa-miR-193b-3p 0 0 1
chr3:53224977|53225194 hsa-miR-595 0 0 1
chr3:53224977|53225194 hsa-miR-625-5p 0 0 1
chr3:53224977|53225194 hsa-miR-625-3p 0 0 1
chr3:53224977|53225194 hsa-miR-637 0 1 1
chr3:53224977|53225194 hsa-miR-661 0 1 1
chr3:53224977|53225194 hsa-miR-766-5p 0 0 1
chr3:53224977|53225194 hsa-miR-766-3p 0 0 1
chr3:53224977|53225194 hsa-miR-708-5p 0 0 1
chr3:53224977|53225194 hsa-miR-708-3p 0 0 1
chr3:53224977|53225194 hsa-miR-665 0 0 1
chr3:53224977|53225194 hsa-miR-1205 0 0 1
chr3:53224977|53225194 hsa-miR-1275 0 1 1
chr3:53224977|53225194 hsa-miR-193a-5p 0 0 1
chr3:53224977|53225194 hsa-miR-1184 0 0 1
chr3:53224977|53225194 hsa-miR-28-5p 0 0 1
chr3:53224977|53225194 hsa-miR-193a-3p 0 0 1
chr3:53224977|53225194 hsa-miR-542-3p 0 0 1
chr3:53224977|53225194 hsa-miR-544 0 0 1
chr3:53224977|53225194 hsa-miR-549 0 0 1
chr3:53224977|53225194 hsa-miR-544a 0 1 0
chr3:53224977|53225194 hsa-miR-1538 1 1 0
chr3:53224977|53225194 hsa-miR-2392 0 1 0
chr3:53224977|53225194 hsa-miR-6075 1 0 0
chr3:53224977|53225194 hsa-miR-12127 0 1 0
chr3:53224977|53225194 hsa-miR-6840-3p 0 1 0
chr3:53224977|53225194 hsa-miR-3194-3p 0 1 0
chr3:53224977|53225194 hsa-miR-6861-5p 1 0 0
chr3:53224977|53225194 hsa-miR-216a-5p 0 1 0
chr3:53224977|53225194 hsa-miR-6720-5p 1 1 0
chr3:53224977|53225194 hsa-miR-3934-5p 0 1 0
chr3:53224977|53225194 hsa-miR-593-5p 1 0 0
chr3:53224977|53225194 hsa-miR-3622b-5p 0 1 0
chr3:53224977|53225194 hsa-miR-6852-5p 0 1 0
chr3:53224977|53225194 hsa-miR-7109-5p 0 1 0
chr3:53224977|53225194 hsa-miR-6763-3p 1 0 0
chr3:53224977|53225194 hsa-miR-6769a-3p 1 0 0
chr3:53224977|53225194 hsa-miR-4707-5p 1 0 0
chr3:53224977|53225194 hsa-miR-4732-3p 1 1 0
chr3:53224977|53225194 hsa-miR-6828-3p 0 1 0
chr3:53224977|53225194 hsa-miR-6513-3p 0 1 0
chr3:53224977|53225194 hsa-miR-3614-3p 0 1 0
chr3:53224977|53225194 hsa-miR-365b-5p 0 1 0
chr3:53224977|53225194 hsa-miR-6773-5p 1 0 0
chr3:53224977|53225194 hsa-miR-6805-3p 0 1 0
chr3:53224977|53225194 hsa-miR-10392-3p 1 1 0
chr3:53224977|53225194 hsa-miR-6874-3p 0 1 0
chr3:53224977|53225194 hsa-miR-549a-3p 0 1 0
chr3:53224977|53225194 hsa-miR-342-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:53224977|53225194
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MCDIRSSWASCHMESQAPLARPRNLHFNKLRGTVPHLGLRTSHAILRVPFPPGRRL
Nucleotide Sequence CTGTGTGACATCAGAAGCTCCTGGGCCAGTTGTCACATGGAGTCCCAGGCCCCATTGGCAAGACCCAGAAATCTGCATTTTAACAAGTTGAGGGGGACAGTTCCACACTTGGGATTGAGGACCTCTCATGCCATCCTGAGGGTCCCTTTTCCCCCAGGACGAAGGCTG
CircID chr3:53224977|53225194
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MELGTAEFCVTSEAPGPVVTWSPRPHWQDPEICILTS
Nucleotide Sequence CTGGAGCTTGGGACTGCAGAATTCTGTGTGACATCAGAAGCTCCTGGGCCAGTTGTCACATGGAGTCCCAGGCCCCATTGGCAAGACCCAGAAATCTGCATTTTAACAAGTTGA
CircID chr3:53224977|53225194
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MAQELLMSHRILQSQAPAPTCSAVP
Nucleotide Sequence CTGGCCCAGGAGCTTCTGATGTCACACAGAATTCTGCAGTCCCAAGCTCCAGCCCCGACCTGCTCTGCTGTTCCT
CircID chr3:53224977|53225194
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MGEKGPSGWHERSSIPSVELSPSTC
Nucleotide Sequence CTGGGGGAAAAGGGACCCTCAGGATGGCATGAGAGGTCCTCAATCCCAAGTGTGGAACTGTCCCCCTCAACTTGTTAA
CircID chr3:53224977|53225194
ORF Type ORF5
Protein Length 58
Nucleotide Length 177
Protein Sequence MRGPQSQVWNCPPQLVKMQISGSCQWGLGLHVTTGPGASDVTQNSAVPSSSPDLLCCS
Nucleotide Sequence ATGAGAGGTCCTCAATCCCAAGTGTGGAACTGTCCCCCTCAACTTGTTAAAATGCAGATTTCTGGGTCTTGCCAATGGGGCCTGGGACTCCATGTGACAACTGGCCCAGGAGCTTCTGATGTCACACAGAATTCTGCAGTCCCAAGCTCCAGCCCCGACCTGCTCTGCTGTTCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab