CircNet

General Information

circRNA Basic Information

CircID	chr3:56624479\|56633843
Strand	-
CircType	exon
Host Gene	ENSG00000163946.13;
Algorism	find_circ;CIRI2;DCC;
Sequence	ACACACTAAAGGGCACCACTGAGGATGACGTGTTGACAGGTCAGGTGGAGGAGCAGTGTGTGCCAGCAGCAGAGGCAGAGCCGCCTGCAGTGAGCGAAACCACAGAGAGGACAGTGTTAGGAGAGTACAATCTCTTTTCTAGGAAGATAGAAGAGATTTTGAAGCAAAAGAATGTTTCATATGTCAGTACAGTTTCCACACCTATCTTTTCAACACAAGAGAAGATGAAACGGCTTTCCGAGTTCATATATTCTAAGACTTCCAAAGCTGGTGTGCAGGAGTTTGTAGATGGTTTGCATGAGAAGCTAAATACTATTATTATTAAAGCATCAGCCAAGGGTGGGAATTTGCCACCAGTCAGTCCTAACGATTCTGGTGCTAAGATAGCATCGAATCCTCTGGAAAGGCATGTCATACCAGTTTCCTCAAGTGACTTCAACAATAAACATCTCCTTGAGCCACTGTGTAGTGATCCTTTGAAAGATACCAACTCTGATGAGCAGCATTCCACTTCGGCTTTAACTGAAGTAGAAATGAACCAGCCTCAACATGCCACAGAGTTAATGGTGACTTCTGATCATATTGTACCTGGTGATATGGCCCGGGAACCAGTAGAAGAAACAACAAAATCCCCCAGTGATGTAAACATTTCTGCTCAACCAGCTCTTTCAAATTTTATAAGCCAGTTAGAACCTGAAGTATTTAATAGTTTGGTTAAAATCATGAAAGACGTCCAGAAAAATACTGTGAAATTTTATATTCATGAAGAAGAAGAGAGTGTGCTCTGTAAAGAAATAAAGATTCCTCTTCTAGAAAAGAAAAGTGGATTTGGGCCATGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGCGGCCAAGGCAGGAGGATCACTCGAGCCCAGGAATTTAAGACCAGCTTGGGCAACACAGCAAGACTCTGTCTCTTACAAAAAAAAAAAAAAAAAAAAAAATTAGCCTGGTATGGTGGTGCGAGCCTAGTGCCATCCATGTATTCAGGAGGCTGAGGTGGGAGGGTGGCTTGAGCCTGGGAGGTCAAGGCTGCAGTGAGCTGTGATCATGCTGCTATACTCCAGCCTGGGCAATGGTGAGACCCTGTCTCAAAGAAAAAAAAAAAGGATTTGATGGTCTCTTAGAGTTTGATTTAGTTGTTTTTCTTTAACAGGAATATCTTATCAAATTAGGCAATACAGAATGTCATCCTGAACAGTTTTTGGAAAGAAGATCAAAATTAGATAAACTATTGATTATTATTCAAAATGAAGACATTGCAGGTTTCATTCACAAGATACCTGGCTTGGTGACTTTAAAGAAGCTCCCCTGTGTTAGTTTTGCTGGTGTTGATAGCCTGGATGATGTTAAAAATCATACATACAATGAATTATTTGTATCTGGAGGTTTTATCGTATCTGATGAATCAATTCTAAACCCAGAGGTTGTCACAGTTGAGAACCTTAAAAATTTTTTGACATTCCTTGAGGAACTTAGTACTCCAGAAGGAAAATGGCAATGGAAAGTCCACTGTAAATTTCAGAAGAAACTAAAGGAACTAGGCAGATTGAATGCTAAAGCTCTAAGTCTGTTGACGCTTCTGAATGTCTATCAGAAGAAACATCTGGTTGAAATTTTGTCATACCACAATTGTGATTCACAAACTCGAAATGCTCCAGAATTGGATTGCCTTATCAGACTTCAGGCTCAGAACATACAGCAACGACACATAGTCTTTTTAACAGAGAAGAACATCAAGATGCTTTCCAGTTATACAGATAATGGAATAGTGGTTGCAACTGCTGAAGACTTCATGCAAAACTTTAAAAATCTTGTGGGCTATCACAATTCAATCACAGAAGAAAACCTTCCACAGCTTGGTGCTAATGAGAATCTTGAGTCGCAGTCAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	miRanda	targetScan
chr3:56624479\|56633843	hsa-miR-138-5p	1	1
chr3:56624479\|56633843	hsa-miR-143-5p	1	1
chr3:56624479\|56633843	hsa-miR-17-3p	1	1
chr3:56624479\|56633843	hsa-miR-93-3p	1	1
chr3:56624479\|56633843	hsa-miR-92a-2-5p	1	1
chr3:56624479\|56633843	hsa-miR-24-3p	1	1
chr3:56624479\|56633843	hsa-miR-181a-2-3p	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr3:56624479\|56633843
ORF Type	ORF1
Protein Length	333
Nucleotide Length	999
Protein Sequence	VLTGQVEEQCVPAAEAEPPAVSETTERTVLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQEKMKRLSEFIYSKTSKAGVQEFVDGLHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPLERHVIPVSSSDFNNKHLLEPLCSDPLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDHIVPGDMAREPVEETTKSPSDVNISAQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKIPLLEKKSGFGPCAVAHACNPSTLGGQGRRITRAQEFKTSLGNTARLCLLQKKKKKKKLAWYGGASLVPSMYSGG*
Nucleotide Sequence	GTGTTGACAGGTCAGGTGGAGGAGCAGTGTGTGCCAGCAGCAGAGGCAGAGCCGCCTGCAGTGAGCGAAACCACAGAGAGGACAGTGTTAGGAGAGTACAATCTCTTTTCTAGGAAGATAGAAGAGATTTTGAAGCAAAAGAATGTTTCATATGTCAGTACAGTTTCCACACCTATCTTTTCAACACAAGAGAAGATGAAACGGCTTTCCGAGTTCATATATTCTAAGACTTCCAAAGCTGGTGTGCAGGAGTTTGTAGATGGTTTGCATGAGAAGCTAAATACTATTATTATTAAAGCATCAGCCAAGGGTGGGAATTTGCCACCAGTCAGTCCTAACGATTCTGGTGCTAAGATAGCATCGAATCCTCTGGAAAGGCATGTCATACCAGTTTCCTCAAGTGACTTCAACAATAAACATCTCCTTGAGCCACTGTGTAGTGATCCTTTGAAAGATACCAACTCTGATGAGCAGCATTCCACTTCGGCTTTAACTGAAGTAGAAATGAACCAGCCTCAACATGCCACAGAGTTAATGGTGACTTCTGATCATATTGTACCTGGTGATATGGCCCGGGAACCAGTAGAAGAAACAACAAAATCCCCCAGTGATGTAAACATTTCTGCTCAACCAGCTCTTTCAAATTTTATAAGCCAGTTAGAACCTGAAGTATTTAATAGTTTGGTTAAAATCATGAAAGACGTCCAGAAAAATACTGTGAAATTTTATATTCATGAAGAAGAAGAGAGTGTGCTCTGTAAAGAAATAAAGATTCCTCTTCTAGAAAAGAAAAGTGGATTTGGGCCATGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGCGGCCAAGGCAGGAGGATCACTCGAGCCCAGGAATTTAAGACCAGCTTGGGCAACACAGCAAGACTCTGTCTCTTACAAAAAAAAAAAAAAAAAAAAAAATTAGCCTGGTATGGTGGTGCGAGCCTAGTGCCATCCATGTATTCAGGAGGCTGA

CircID	chr3:56624479\|56633843
ORF Type	ORF2
Protein Length	229
Nucleotide Length	687
Protein Sequence	LERRSKLDKLLIIIQNEDIAGFIHKIPGLVTLKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSITEENLPQLGANENLESQS
Nucleotide Sequence	TTGGAAAGAAGATCAAAATTAGATAAACTATTGATTATTATTCAAAATGAAGACATTGCAGGTTTCATTCACAAGATACCTGGCTTGGTGACTTTAAAGAAGCTCCCCTGTGTTAGTTTTGCTGGTGTTGATAGCCTGGATGATGTTAAAAATCATACATACAATGAATTATTTGTATCTGGAGGTTTTATCGTATCTGATGAATCAATTCTAAACCCAGAGGTTGTCACAGTTGAGAACCTTAAAAATTTTTTGACATTCCTTGAGGAACTTAGTACTCCAGAAGGAAAATGGCAATGGAAAGTCCACTGTAAATTTCAGAAGAAACTAAAGGAACTAGGCAGATTGAATGCTAAAGCTCTAAGTCTGTTGACGCTTCTGAATGTCTATCAGAAGAAACATCTGGTTGAAATTTTGTCATACCACAATTGTGATTCACAAACTCGAAATGCTCCAGAATTGGATTGCCTTATCAGACTTCAGGCTCAGAACATACAGCAACGACACATAGTCTTTTTAACAGAGAAGAACATCAAGATGCTTTCCAGTTATACAGATAATGGAATAGTGGTTGCAACTGCTGAAGACTTCATGCAAAACTTTAAAAATCTTGTGGGCTATCACAATTCAATCACAGAAGAAAACCTTCCACAGCTTGGTGCTAATGAGAATCTTGAGTCGCAGTCA

CircID	chr3:56624479\|56633843
ORF Type	ORF3
Protein Length	125
Nucleotide Length	375
Protein Sequence	MTCLSRGFDAILAPESLGLTGGKFPPLADALIIIVFSFSCKPSTNSCTPALEVLEYMNSESRFIFSCVEKIGVETVLTYETFFCFKISSIFLEKRLYSPNTVLSVVSLTAGGSASAAGTHCSST*
Nucleotide Sequence	ATGACATGCCTTTCCAGAGGATTCGATGCTATCTTAGCACCAGAATCGTTAGGACTGACTGGTGGCAAATTCCCACCCTTGGCTGATGCTTTAATAATAATAGTATTTAGCTTCTCATGCAAACCATCTACAAACTCCTGCACACCAGCTTTGGAAGTCTTAGAATATATGAACTCGGAAAGCCGTTTCATCTTCTCTTGTGTTGAAAAGATAGGTGTGGAAACTGTACTGACATATGAAACATTCTTTTGCTTCAAAATCTCTTCTATCTTCCTAGAAAAGAGATTGTACTCTCCTAACACTGTCCTCTCTGTGGTTTCGCTCACTGCAGGCGGCTCTGCCTCTGCTGCTGGCACACACTGCTCCTCCACCTGA

CircID	chr3:56624479\|56633843
ORF Type	ORF4
Protein Length	55
Nucleotide Length	165
Protein Sequence	MDGTRLAPPYQANFFFFFFFCKRQSLAVLPKLVLNSWARVILLPWPPKVLGLQA*
Nucleotide Sequence	ATGGATGGCACTAGGCTCGCACCACCATACCAGGCTAATTTTTTTTTTTTTTTTTTTTTTTGTAAGAGACAGAGTCTTGCTGTGTTGCCCAAGCTGGTCTTAAATTCCTGGGCTCGAGTGATCCTCCTGCCTTGGCCGCCCAAAGTGCTGGGATTACAGGCGTGA

CircID	chr3:56624479\|56633843
ORF Type	ORF5
Protein Length	43
Nucleotide Length	129
Protein Sequence	MSIRRNIWLKFCHTTIVIHKLEMLQNWIALSDFRLRTYSNDT*
Nucleotide Sequence	ATGTCTATCAGAAGAAACATCTGGTTGAAATTTTGTCATACCACAATTGTGATTCACAAACTCGAAATGCTCCAGAATTGGATTGCCTTATCAGACTTCAGGCTCAGAACATACAGCAACGACACATAG

CircID	chr3:56624479\|56633843
ORF Type	ORF6
Protein Length	39
Nucleotide Length	117
Protein Sequence	MAQIHFSFLEEESLFLYRAHSLLLHEYKISQYFSGRLS*
Nucleotide Sequence	ATGGCCCAAATCCACTTTTCTTTTCTAGAAGAGGAATCTTTATTTCTTTACAGAGCACACTCTCTTCTTCTTCATGAATATAAAATTTCACAGTATTTTTCTGGACGTCTTTCATGA

CircID	chr3:56624479\|56633843
ORF Type	ORF7
Protein Length	33
Nucleotide Length	99
Protein Sequence	MALGSHHHTRLIFFFFFFFVRDRVLLCCPSWS*
Nucleotide Sequence	ATGGCACTAGGCTCGCACCACCATACCAGGCTAATTTTTTTTTTTTTTTTTTTTTTTGTAAGAGACAGAGTCTTGCTGTGTTGCCCAAGCTGGTCTTAA

CircID	chr3:56624479\|56633843
ORF Type	ORF8
Protein Length	30
Nucleotide Length	90
Protein Sequence	MQTIYKLLHTSFGSLRIYELGKPFHLLLC*
Nucleotide Sequence	ATGCAAACCATCTACAAACTCCTGCACACCAGCTTTGGAAGTCTTAGAATATATGAACTCGGAAAGCCGTTTCATCTTCTCTTGTGTTGA

CircID	chr3:56624479\|56633843
ORF Type	ORF9
Protein Length	79
Nucleotide Length	237
Protein Sequence	LKELVEQKCLHHWGILLFLLLVPGPYHQVQYDQKSPLTLWHVEAGSFLLQLKPKWNAAHQSWYLSKDHYTVAQGDVYC*
Nucleotide Sequence	TTGAAAGAGCTGGTTGAGCAGAAATGTTTACATCACTGGGGGATTTTGTTGTTTCTTCTACTGGTTCCCGGGCCATATCACCAGGTACAATATGATCAGAAGTCACCATTAACTCTGTGGCATGTTGAGGCTGGTTCATTTCTACTTCAGTTAAAGCCGAAGTGGAATGCTGCTCATCAGAGTTGGTATCTTTCAAAGGATCACTACACAGTGGCTCAAGGAGATGTTTATTGTTGA

CircID	chr3:56624479\|56633843
ORF Type	ORF10
Protein Length	52
Nucleotide Length	156
Protein Sequence	VDLGHVQWLTPVIPALWAAKAGGSLEPRNLRPAWATQQDSVSYKKKKKKKN*
Nucleotide Sequence	GTGGATTTGGGCCATGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGCGGCCAAGGCAGGAGGATCACTCGAGCCCAGGAATTTAAGACCAGCTTGGGCAACACAGCAAGACTCTGTCTCTTACAAAAAAAAAAAAAAAAAAAAAAATTAG

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr3:56624479\|56633843	MSI2	0	3	0
chr3:56624479\|56633843	U2AF2	24	26	77
chr3:56624479\|56633843	MOV10	4	13	1
chr3:56624479\|56633843	NCBP2	0	0	1
chr3:56624479\|56633843	PRPF8	1	1	2
chr3:56624479\|56633843	TNRC6A	0	1	3
chr3:56624479\|56633843	NUDT21	3	1	3
chr3:56624479\|56633843	RBM15B	1	0	0
chr3:56624479\|56633843	DGCR8	2	1	1
chr3:56624479\|56633843	GRWD1	0	0	1
chr3:56624479\|56633843	PTBP1	11	10	3
chr3:56624479\|56633843	DHX9	0	0	21
chr3:56624479\|56633843	DDX3X	7	0	3
chr3:56624479\|56633843	LARP7	0	1	0
chr3:56624479\|56633843	ACIN1	0	0	3
chr3:56624479\|56633843	RANGAP1	0	0	3
chr3:56624479\|56633843	FXR1	0	3	13
chr3:56624479\|56633843	FXR2	2	4	3
chr3:56624479\|56633843	GTF2F1	0	2	2
chr3:56624479\|56633843	RBM47	1	3	9
chr3:56624479\|56633843	SLTM	0	0	5
chr3:56624479\|56633843	EIF4G2	0	0	1
chr3:56624479\|56633843	CSTF2T	3	3	16
chr3:56624479\|56633843	XRN2	0	0	1
chr3:56624479\|56633843	YBX3	0	0	1
chr3:56624479\|56633843	ELAVL1	12	10	16
chr3:56624479\|56633843	KHDRBS1	0	1	1
chr3:56624479\|56633843	CELF2	0	0	1
chr3:56624479\|56633843	PUM2	2	0	0
chr3:56624479\|56633843	YTHDF2	0	0	1
chr3:56624479\|56633843	YTHDF1	2	3	3
chr3:56624479\|56633843	SRSF7	1	1	1
chr3:56624479\|56633843	SRSF1	5	5	8
chr3:56624479\|56633843	SRSF3	1	0	0
chr3:56624479\|56633843	U2AF1	1	2	0
chr3:56624479\|56633843	ADAR	0	0	5
chr3:56624479\|56633843	KHSRP	1	0	1
chr3:56624479\|56633843	SRSF9	1	2	2
chr3:56624479\|56633843	DDX54	4	10	46
chr3:56624479\|56633843	EFTUD2	0	0	1
chr3:56624479\|56633843	PCBP2	0	0	2
chr3:56624479\|56633843	SF3A3	3	0	2
chr3:56624479\|56633843	ZNF184	0	2	2
chr3:56624479\|56633843	TIAL1	0	1	0
chr3:56624479\|56633843	LIN28B	2	1	5
chr3:56624479\|56633843	LIN28A	0	1	0
chr3:56624479\|56633843	SFPQ	0	0	1
chr3:56624479\|56633843	FTO	0	0	1
chr3:56624479\|56633843	SAFB2	1	2	5
chr3:56624479\|56633843	RBM22	1	0	0
chr3:56624479\|56633843	AIFM1	0	1	0
chr3:56624479\|56633843	ATXN2	0	0	2
chr3:56624479\|56633843	EIF4A3	6	11	21
chr3:56624479\|56633843	AGO2	0	10	11
chr3:56624479\|56633843	UCHL5	0	0	4
chr3:56624479\|56633843	FAM120A	0	1	8
chr3:56624479\|56633843	CNBP	0	1	1
chr3:56624479\|56633843	RPS5	0	0	1
chr3:56624479\|56633843	UPF1	0	9	1
chr3:56624479\|56633843	TAF15	1	3	2
chr3:56624479\|56633843	FUS	0	4	0
chr3:56624479\|56633843	ZNF622	0	0	1
chr3:56624479\|56633843	HNRNPK	0	0	3
chr3:56624479\|56633843	HNRNPL	0	0	1
chr3:56624479\|56633843	HNRNPM	0	0	2
chr3:56624479\|56633843	RBM15	0	0	1
chr3:56624479\|56633843	HNRNPC	64	58	82
chr3:56624479\|56633843	SUGP2	0	0	1
chr3:56624479\|56633843	WTAP	0	1	0
chr3:56624479\|56633843	SMNDC1	1	0	1
chr3:56624479\|56633843	AUH	0	0	1
chr3:56624479\|56633843	HNRNPA1	12	18	10
chr3:56624479\|56633843	SND1	0	1	2
chr3:56624479\|56633843	IGF2BP1	0	6	9
chr3:56624479\|56633843	IGF2BP3	0	2	8
chr3:56624479\|56633843	IGF2BP2	3	15	43
chr3:56624479\|56633843	TARDBP	5	1	3
chr3:56624479\|56633843	YTHDC1	2	1	4
chr3:56624479\|56633843	BUD13	0	0	3
chr3:56624479\|56633843	HNRNPD	0	1	0
chr3:56624479\|56633843	METTL3	0	1	0
chr3:56624479\|56633843	GEMIN5	0	0	2
chr3:56624479\|56633843	PPIG	0	0	2
chr3:56624479\|56633843	FBL	2	4	17
chr3:56624479\|56633843	AGGF1	0	0	1
chr3:56624479\|56633843	RBM5	0	1	1
chr3:56624479\|56633843	NUMA1	0	0	3
chr3:56624479\|56633843	SF3B4	1	0	7
chr3:56624479\|56633843	CPSF7	7	2	1
chr3:56624479\|56633843	FMR1	4	12	12
chr3:56624479\|56633843	CPSF6	3	2	1
chr3:56624479\|56633843	TIA1	0	3	0
chr3:56624479\|56633843	CPSF3	2	0	0
chr3:56624479\|56633843	CPSF1	0	1	1
chr3:56624479\|56633843	QKI	0	0	2
chr3:56624479\|56633843	CPSF4	0	1	0
chr3:56624479\|56633843	NOP58	4	8	17
chr3:56624479\|56633843	RC3H1	0	1	0
chr3:56624479\|56633843	NOP56	2	1	7
chr3:56624479\|56633843	LSM11	0	1	0
chr3:56624479\|56633843	HNRNPA2B1	2	0	1
chr3:56624479\|56633843	FIP1L1	3	1	3
chr3:56624479\|56633843	TRA2A	0	1	2
chr3:56624479\|56633843	ZC3H7B	0	1	3
chr3:56624479\|56633843	RBM10	3	6	0
chr3:56624479\|56633843	MSI1	0	1	0
chr3:56624479\|56633843	DDX24	0	0	1
chr3:56624479\|56633843	AGO1	0	1	1
chr3:56624479\|56633843	SRRM4	1	0	0
chr3:56624479\|56633843	CSTF2	6	2	3
chr3:56624479\|56633843	TARBP2	0	0	46
chr3:56624479\|56633843	AGO3	0	1	0
chr3:56624479\|56633843	DKC1	0	0	1
chr3:56624479\|56633843	EWSR1	0	1	1

CircRNA Information