CircRNA Information

General Information
circRNA Basic Information
CircID chr3:56646613|56646818
Strand -
CircType exon
Host Gene ENSG00000163946.12;
Algorism CIRI2;
Sequence AGTTTTGCTTCTCATATCTTCTGTGTCTGAGTCCCCACCCACACTCTTTTTCCTACACTGAATTAAATTAATCAATTCTTTGACTCTATCCTTATCATAATCCAAAGAATGAGATGATCTTTGCTTTCCAGATATAATGGCTTCACCTCTTGAGTTATTTCGTTTTCCAAATTTCATTTTTGTACCATTCATTTCTTCTTCTTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:56646613|56646818 hsa-miR-186-5p 0 0 1
chr3:56646613|56646818 hsa-miR-186-3p 0 0 1
chr3:56646613|56646818 hsa-miR-335-5p 0 0 1
chr3:56646613|56646818 hsa-miR-335-3p 0 0 1
chr3:56646613|56646818 hsa-miR-1323 0 0 1
chr3:56646613|56646818 hsa-miR-1293 0 0 1
chr3:56646613|56646818 hsa-miR-1299 0 0 1
chr3:56646613|56646818 hsa-miR-1253 0 0 1
chr3:56646613|56646818 hsa-miR-548o-3p 0 0 1
chr3:56646613|56646818 hsa-miR-548p 0 0 1
chr3:56646613|56646818 hsa-miR-1324 0 0 1
chr3:56646613|56646818 hsa-miR-548o 0 0 1
chr3:56646613|56646818 hsa-miR-491-5p 0 0 1
chr3:56646613|56646818 hsa-miR-574-5p 0 0 1
chr3:56646613|56646818 hsa-miR-875-3p 0 0 1
chr3:56646613|56646818 hsa-miR-9 0 0 1
chr3:56646613|56646818 hsa-miR-1300 0 0 1
chr3:56646613|56646818 hsa-miR-665 1 0 0
chr3:56646613|56646818 hsa-miR-1183 1 0 0
chr3:56646613|56646818 hsa-miR-1268a 1 0 0
chr3:56646613|56646818 hsa-miR-4322 1 0 0
chr3:56646613|56646818 hsa-miR-3916 1 0 0
chr3:56646613|56646818 hsa-miR-1268b 1 0 0
chr3:56646613|56646818 hsa-miR-4450 1 0 0
chr3:56646613|56646818 hsa-miR-4462 1 0 0
chr3:56646613|56646818 hsa-miR-4651 1 0 0
chr3:56646613|56646818 hsa-miR-6088 1 0 0
chr3:56646613|56646818 hsa-miR-6124 1 0 0
chr3:56646613|56646818 hsa-miR-8089 1 0 0
chr3:56646613|56646818 hsa-miR-12115 1 0 0
chr3:56646613|56646818 hsa-miR-150-3p 1 0 0
chr3:56646613|56646818 hsa-miR-4433b-3p 1 0 0
chr3:56646613|56646818 hsa-miR-92a-2-5p 1 0 0
chr3:56646613|56646818 hsa-miR-4433a-3p 1 0 0
chr3:56646613|56646818 hsa-miR-6759-5p 1 0 0
chr3:56646613|56646818 hsa-miR-197-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6748-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6786-5p 1 0 0
chr3:56646613|56646818 hsa-miR-5088-5p 1 0 0
chr3:56646613|56646818 hsa-miR-4786-3p 1 0 0
chr3:56646613|56646818 hsa-miR-1229-5p 1 0 0
chr3:56646613|56646818 hsa-miR-1228-5p 1 0 0
chr3:56646613|56646818 hsa-miR-4713-3p 1 0 0
chr3:56646613|56646818 hsa-miR-654-5p 1 0 0
chr3:56646613|56646818 hsa-miR-1233-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6769b-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6778-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6756-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6803-5p 1 0 0
chr3:56646613|56646818 hsa-miR-10401-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6780a-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6797-5p 1 0 0
chr3:56646613|56646818 hsa-miR-4728-5p 1 0 0
chr3:56646613|56646818 hsa-miR-4745-5p 1 0 0
chr3:56646613|56646818 hsa-miR-4749-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6795-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6846-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6887-5p 1 0 0
chr3:56646613|56646818 hsa-miR-4697-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6831-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6855-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6766-5p 1 0 0
chr3:56646613|56646818 hsa-miR-6790-5p 1 0 0
chr3:56646613|56646818 hsa-miR-514b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:56646613|56646818
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MENEITQEVKPLYLESKDHLILWIMIRIESKN
Nucleotide Sequence TTGGAAAACGAAATAACTCAAGAGGTGAAGCCATTATATCTGGAAAGCAAAGATCATCTCATTCTTTGGATTATGATAAGGATAGAGTCAAAGAATTGA
CircID chr3:56646613|56646818
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MNGTKMKFGKRNNSRGEAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVGGDSDTEDMRSKT
Nucleotide Sequence ATGAATGGTACAAAAATGAAATTTGGAAAACGAAATAACTCAAGAGGTGAAGCCATTATATCTGGAAAGCAAAGATCATCTCATTCTTTGGATTATGATAAGGATAGAGTCAAAGAATTGATTAATTTAATTCAGTGTAGGAAAAAGAGTGTGGGTGGGGACTCAGACACAGAAGATATGAGAAGCAAAACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab