CircRNA Information

General Information
circRNA Basic Information
CircID chr3:56769157|56769324
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCATGCGCTCCTCTGGTGTGGAGTGAGGAAGGCGAGCTCGCCTTTGGCCAGTCGCTCCCTGAGCCCTGCCTCTCCCTGTCCACAGCTGTTCACGGCTACTGGACTCATTTGAGCTGAGTTCAGCACATGCTATGGAATGTTGTGTTCATGATGTTGTGATGTAGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:56769157|56769324 hsa-miR-221-5p 0 0 1
chr3:56769157|56769324 hsa-miR-221-3p 0 0 1
chr3:56769157|56769324 hsa-miR-222-5p 0 0 1
chr3:56769157|56769324 hsa-miR-222-3p 0 0 1
chr3:56769157|56769324 hsa-miR-193b-5p 0 0 1
chr3:56769157|56769324 hsa-miR-193b-3p 0 0 1
chr3:56769157|56769324 hsa-miR-587 0 1 1
chr3:56769157|56769324 hsa-miR-543 0 0 1
chr3:56769157|56769324 hsa-miR-940 0 1 1
chr3:56769157|56769324 hsa-miR-1266-5p 0 0 1
chr3:56769157|56769324 hsa-miR-1266-3p 0 0 1
chr3:56769157|56769324 hsa-miR-1827 0 0 1
chr3:56769157|56769324 hsa-miR-512-5p 0 0 1
chr3:56769157|56769324 hsa-miR-770-5p 0 0 1
chr3:56769157|56769324 hsa-miR-1207-5p 1 1 1
chr3:56769157|56769324 hsa-miR-483-3p 0 0 1
chr3:56769157|56769324 hsa-miR-193a-3p 0 0 1
chr3:56769157|56769324 hsa-miR-105 0 0 1
chr3:56769157|56769324 hsa-miR-24 0 0 1
chr3:56769157|56769324 hsa-miR-499-3p 0 0 1
chr3:56769157|56769324 hsa-miR-650 1 0 0
chr3:56769157|56769324 hsa-miR-663a 1 0 0
chr3:56769157|56769324 hsa-miR-762 1 0 0
chr3:56769157|56769324 hsa-miR-548s 0 1 0
chr3:56769157|56769324 hsa-miR-3132 1 0 0
chr3:56769157|56769324 hsa-miR-3138 1 1 0
chr3:56769157|56769324 hsa-miR-3197 1 0 0
chr3:56769157|56769324 hsa-miR-378c 0 1 0
chr3:56769157|56769324 hsa-miR-4270 1 1 0
chr3:56769157|56769324 hsa-miR-4437 1 1 0
chr3:56769157|56769324 hsa-miR-4441 0 1 0
chr3:56769157|56769324 hsa-miR-4462 1 0 0
chr3:56769157|56769324 hsa-miR-4518 0 1 0
chr3:56769157|56769324 hsa-miR-4539 0 1 0
chr3:56769157|56769324 hsa-miR-4656 1 0 0
chr3:56769157|56769324 hsa-miR-4739 1 0 0
chr3:56769157|56769324 hsa-miR-5787 1 0 0
chr3:56769157|56769324 hsa-miR-6090 1 1 0
chr3:56769157|56769324 hsa-miR-6132 1 1 0
chr3:56769157|56769324 hsa-miR-8085 1 1 0
chr3:56769157|56769324 hsa-miR-8089 1 0 0
chr3:56769157|56769324 hsa-miR-12128 0 1 0
chr3:56769157|56769324 hsa-miR-134-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6765-5p 1 0 0
chr3:56769157|56769324 hsa-miR-4687-3p 1 0 0
chr3:56769157|56769324 hsa-miR-3934-5p 1 0 0
chr3:56769157|56769324 hsa-miR-7114-5p 0 1 0
chr3:56769157|56769324 hsa-miR-6089 1 0 0
chr3:56769157|56769324 hsa-miR-6880-5p 1 0 0
chr3:56769157|56769324 hsa-miR-4695-5p 1 0 0
chr3:56769157|56769324 hsa-miR-197-5p 1 0 0
chr3:56769157|56769324 hsa-miR-7845-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6732-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6798-5p 1 0 0
chr3:56769157|56769324 hsa-miR-2467-3p 1 0 0
chr3:56769157|56769324 hsa-miR-5088-5p 1 1 0
chr3:56769157|56769324 hsa-miR-1908-5p 1 0 0
chr3:56769157|56769324 hsa-miR-3667-3p 0 1 0
chr3:56769157|56769324 hsa-miR-5585-3p 0 1 0
chr3:56769157|56769324 hsa-miR-149-3p 1 0 0
chr3:56769157|56769324 hsa-miR-3162-5p 1 0 0
chr3:56769157|56769324 hsa-miR-664b-5p 1 1 0
chr3:56769157|56769324 hsa-miR-744-5p 1 0 0
chr3:56769157|56769324 hsa-miR-670-3p 0 1 0
chr3:56769157|56769324 hsa-miR-6880-3p 0 1 0
chr3:56769157|56769324 hsa-miR-3124-3p 0 1 0
chr3:56769157|56769324 hsa-miR-4520-3p 0 1 0
chr3:56769157|56769324 hsa-miR-1233-5p 1 0 0
chr3:56769157|56769324 hsa-miR-4763-3p 1 0 0
chr3:56769157|56769324 hsa-miR-6787-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6893-5p 1 1 0
chr3:56769157|56769324 hsa-miR-1343-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6743-5p 1 1 0
chr3:56769157|56769324 hsa-miR-6754-5p 1 1 0
chr3:56769157|56769324 hsa-miR-6756-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6722-3p 1 0 0
chr3:56769157|56769324 hsa-miR-6779-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6808-5p 1 1 0
chr3:56769157|56769324 hsa-miR-6879-5p 1 0 0
chr3:56769157|56769324 hsa-miR-7111-5p 1 0 0
chr3:56769157|56769324 hsa-miR-3620-5p 1 0 0
chr3:56769157|56769324 hsa-miR-4728-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6780b-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6836-5p 1 1 0
chr3:56769157|56769324 hsa-miR-10396a-5p 1 0 0
chr3:56769157|56769324 hsa-miR-10396b-5p 1 1 0
chr3:56769157|56769324 hsa-miR-1237-5p 1 0 0
chr3:56769157|56769324 hsa-miR-1909-3p 1 0 0
chr3:56769157|56769324 hsa-miR-4649-5p 1 0 0
chr3:56769157|56769324 hsa-miR-4685-5p 1 1 0
chr3:56769157|56769324 hsa-miR-6729-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6777-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6794-5p 1 0 0
chr3:56769157|56769324 hsa-miR-6731-5p 1 1 0
chr3:56769157|56769324 hsa-miR-499a-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:56769157|56769324
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MPLPVHSCSRLLDSFELSSAHAMECCVHDVVM
Nucleotide Sequence CTGCCTCTCCCTGTCCACAGCTGTTCACGGCTACTGGACTCATTTGAGCTGAGTTCAGCACATGCTATGGAATGTTGTGTTCATGATGTTGTGATGTAG
CircID chr3:56769157|56769324
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MVWSEEGELAFGQSLPEPCLSLSTAVHGYWTHLS
Nucleotide Sequence CTGGTGTGGAGTGAGGAAGGCGAGCTCGCCTTTGGCCAGTCGCTCCCTGAGCCCTGCCTCTCCCTGTCCACAGCTGTTCACGGCTACTGGACTCATTTGAGCTGA
CircID chr3:56769157|56769324
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MWTGRGRAQGATGQRRARLPHSTPEERM
Nucleotide Sequence CTGTGGACAGGGAGAGGCAGGGCTCAGGGAGCGACTGGCCAAAGGCGAGCTCGCCTTCCTCACTCCACACCAGAGGAGCGCATG
CircID chr3:56769157|56769324
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MNSAQMSPVAVNSCGQGEAGLRERLAKGELAFLTPHQRSA
Nucleotide Sequence CTGAACTCAGCTCAAATGAGTCCAGTAGCCGTGAACAGCTGTGGACAGGGAGAGGCAGGGCTCAGGGAGCGACTGGCCAAAGGCGAGCTCGCCTTCCTCACTCCACACCAGAGGAGCGCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab