CircRNA Information

General Information
circRNA Basic Information
CircID chr3:58162282|58162540
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCACTTCTTCTATGTTTCTCTATTTGGCCACTTGAAGGGGAAAAAAAACGGTTCCAACTGGCATTAATGCTCCTTAATTAAGCTCAAAGCTAGGAACTGCCCCCACAGGGCAGGTTTGTGGCTGTGCGTTTGGGTCACAGCATGTAGCAAGGTAATCTGTTAACTGAAGTGGGCACCTAGAACATCTACCCATTGTGCACCACCTGACTGCCGCTTCCTCCTTGAAGCCCTCCTGCCCAGGGTGCAGAGCCTGTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:58162282|58162540 hsa-miR-26b-5p 0 0 1
chr3:58162282|58162540 hsa-miR-26b-3p 0 0 1
chr3:58162282|58162540 hsa-miR-221-5p 0 0 1
chr3:58162282|58162540 hsa-miR-221-3p 0 0 1
chr3:58162282|58162540 hsa-miR-222-5p 0 0 1
chr3:58162282|58162540 hsa-miR-222-3p 0 0 1
chr3:58162282|58162540 hsa-miR-155-5p 0 0 1
chr3:58162282|58162540 hsa-miR-155-3p 0 0 1
chr3:58162282|58162540 hsa-miR-376c-5p 0 0 1
chr3:58162282|58162540 hsa-miR-376c-3p 0 0 1
chr3:58162282|58162540 hsa-miR-384 0 0 1
chr3:58162282|58162540 hsa-miR-484 0 1 1
chr3:58162282|58162540 hsa-miR-494-5p 0 0 1
chr3:58162282|58162540 hsa-miR-494-3p 0 0 1
chr3:58162282|58162540 hsa-miR-612 1 1 1
chr3:58162282|58162540 hsa-miR-874-5p 0 0 1
chr3:58162282|58162540 hsa-miR-874-3p 0 0 1
chr3:58162282|58162540 hsa-miR-760 0 1 1
chr3:58162282|58162540 hsa-miR-935 0 0 1
chr3:58162282|58162540 hsa-miR-1297 0 0 1
chr3:58162282|58162540 hsa-miR-125a-3p 0 0 1
chr3:58162282|58162540 hsa-miR-491-5p 0 0 1
chr3:58162282|58162540 hsa-miR-486-3p 0 0 1
chr3:58162282|58162540 hsa-miR-146b-3p 0 1 1
chr3:58162282|58162540 hsa-miR-576-3p 0 0 1
chr3:58162282|58162540 hsa-miR-26a 0 0 1
chr3:58162282|58162540 hsa-miR-1285 0 0 1
chr3:58162282|58162540 hsa-miR-768-3p 0 0 1
chr3:58162282|58162540 hsa-miR-365 0 0 1
chr3:58162282|58162540 hsa-miR-451 0 0 1
chr3:58162282|58162540 hsa-miR-650 1 0 0
chr3:58162282|58162540 hsa-miR-3141 1 0 0
chr3:58162282|58162540 hsa-miR-3147 1 0 0
chr3:58162282|58162540 hsa-miR-3155a 1 1 0
chr3:58162282|58162540 hsa-miR-4292 0 1 0
chr3:58162282|58162540 hsa-miR-3937 1 0 0
chr3:58162282|58162540 hsa-miR-4447 0 1 0
chr3:58162282|58162540 hsa-miR-4467 1 0 0
chr3:58162282|58162540 hsa-miR-3155b 1 1 0
chr3:58162282|58162540 hsa-miR-4488 1 0 0
chr3:58162282|58162540 hsa-miR-3972 1 0 0
chr3:58162282|58162540 hsa-miR-3976 0 1 0
chr3:58162282|58162540 hsa-miR-4642 1 0 0
chr3:58162282|58162540 hsa-miR-4721 1 1 0
chr3:58162282|58162540 hsa-miR-4739 1 0 0
chr3:58162282|58162540 hsa-miR-6081 1 0 0
chr3:58162282|58162540 hsa-miR-6860 1 1 0
chr3:58162282|58162540 hsa-miR-8072 1 0 0
chr3:58162282|58162540 hsa-miR-12118 1 1 0
chr3:58162282|58162540 hsa-miR-6765-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6861-5p 1 1 0
chr3:58162282|58162540 hsa-miR-766-5p 0 1 0
chr3:58162282|58162540 hsa-miR-3926 0 1 0
chr3:58162282|58162540 hsa-miR-4695-5p 1 0 0
chr3:58162282|58162540 hsa-miR-4722-5p 1 1 0
chr3:58162282|58162540 hsa-miR-3677-5p 0 1 0
chr3:58162282|58162540 hsa-miR-6820-5p 0 1 0
chr3:58162282|58162540 hsa-miR-6727-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6721-5p 1 1 0
chr3:58162282|58162540 hsa-miR-2467-5p 1 1 0
chr3:58162282|58162540 hsa-miR-6760-5p 1 0 0
chr3:58162282|58162540 hsa-miR-3934-3p 1 0 0
chr3:58162282|58162540 hsa-miR-5088-5p 1 0 0
chr3:58162282|58162540 hsa-miR-1229-5p 1 1 0
chr3:58162282|58162540 hsa-miR-4691-3p 0 1 0
chr3:58162282|58162540 hsa-miR-1228-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6771-5p 1 0 0
chr3:58162282|58162540 hsa-miR-149-3p 1 0 0
chr3:58162282|58162540 hsa-miR-6781-5p 1 0 0
chr3:58162282|58162540 hsa-miR-449b-3p 0 1 0
chr3:58162282|58162540 hsa-miR-3121-3p 0 1 0
chr3:58162282|58162540 hsa-miR-10400-5p 1 0 0
chr3:58162282|58162540 hsa-miR-1207-5p 1 1 0
chr3:58162282|58162540 hsa-miR-4763-3p 1 0 0
chr3:58162282|58162540 hsa-miR-6865-5p 1 0 0
chr3:58162282|58162540 hsa-miR-5001-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6743-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6754-5p 1 0 0
chr3:58162282|58162540 hsa-miR-7107-5p 1 0 0
chr3:58162282|58162540 hsa-miR-11181-3p 1 0 0
chr3:58162282|58162540 hsa-miR-1249-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6722-3p 1 0 0
chr3:58162282|58162540 hsa-miR-6774-5p 1 1 0
chr3:58162282|58162540 hsa-miR-6797-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6879-5p 1 0 0
chr3:58162282|58162540 hsa-miR-3127-3p 0 1 0
chr3:58162282|58162540 hsa-miR-4728-5p 1 0 0
chr3:58162282|58162540 hsa-miR-1237-5p 1 0 0
chr3:58162282|58162540 hsa-miR-328-5p 1 0 0
chr3:58162282|58162540 hsa-miR-675-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6846-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6858-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6883-5p 1 0 0
chr3:58162282|58162540 hsa-miR-3187-5p 1 1 0
chr3:58162282|58162540 hsa-miR-4436b-3p 1 0 0
chr3:58162282|58162540 hsa-miR-6856-5p 1 0 0
chr3:58162282|58162540 hsa-miR-3173-3p 1 1 0
chr3:58162282|58162540 hsa-miR-4472 0 1 0
chr3:58162282|58162540 hsa-miR-6785-5p 1 0 0
chr3:58162282|58162540 hsa-miR-6791-5p 1 0 0
chr3:58162282|58162540 hsa-miR-18b-5p 0 1 0
chr3:58162282|58162540 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:58162282|58162540
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MKWAPRTSTHCAPPDCRFLLEALLPRVQSLF
Nucleotide Sequence CTGAAGTGGGCACCTAGAACATCTACCCATTGTGCACCACCTGACTGCCGCTTCCTCCTTGAAGCCCTCCTGCCCAGGGTGCAGAGCCTGTTC
CircID chr3:58162282|58162540
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MGRRASRRKRQSGGAQWVDVLGAHFS
Nucleotide Sequence CTGGGCAGGAGGGCTTCAAGGAGGAAGCGGCAGTCAGGTGGTGCACAATGGGTAGATGTTCTAGGTGCCCACTTCAGTTAA
CircID chr3:58162282|58162540
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MLHAVTQTHSHKPALWGQFLALSLIKEH
Nucleotide Sequence TTGCTACATGCTGTGACCCAAACGCACAGCCACAAACCTGCCCTGTGGGGGCAGTTCCTAGCTTTGAGCTTAATTAAGGAGCATTAA
CircID chr3:58162282|58162540
ORF Type ORF4
Protein Length 57
Nucleotide Length 174
Protein Sequence MHPGQEGFKEEAAVRWCTMGRCSRCPLQLTDYLATCCDPNAQPQTCPVGAVPSFELN
Nucleotide Sequence CTGCACCCTGGGCAGGAGGGCTTCAAGGAGGAAGCGGCAGTCAGGTGGTGCACAATGGGTAGATGTTCTAGGTGCCCACTTCAGTTAACAGATTACCTTGCTACATGCTGTGACCCAAACGCACAGCCACAAACCTGCCCTGTGGGGGCAGTTCCTAGCTTTGAGCTTAATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab