CircRNA Information

General Information
circRNA Basic Information
CircID chr3:58171685|58171910
Strand +
CircType exon
Host Gene ENSG00000136068.13;
Algorism CIRI2;
Sequence ACCTCATTTCTGGATTTCTGCACCACACAGCTCTCACTGTTTCTGCCAATGGTGAAAAGACCACCAATAAGCTGCTGCCCTTCTCTCCCCCAACCATTCCCAACTTTCAGGCCAAAGACCCGCAGGAGTTTCATTCTGTCCTGTCTGTACAGATCATTATTTTCCAGAAAAAGTGACCCATGAAGTTGGCTGGGGCGGGTGTGGAGTGTTATGTCATGGGACGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:58171685|58171910 hsa-miR-21-5p 0 0 1
chr3:58171685|58171910 hsa-miR-21-3p 0 0 1
chr3:58171685|58171910 hsa-miR-197-5p 0 0 1
chr3:58171685|58171910 hsa-miR-197-3p 0 0 1
chr3:58171685|58171910 hsa-miR-141-5p 0 0 1
chr3:58171685|58171910 hsa-miR-141-3p 0 0 1
chr3:58171685|58171910 hsa-miR-185-5p 0 0 1
chr3:58171685|58171910 hsa-miR-185-3p 0 0 1
chr3:58171685|58171910 hsa-miR-200a-5p 0 0 1
chr3:58171685|58171910 hsa-miR-200a-3p 0 0 1
chr3:58171685|58171910 hsa-miR-625-5p 0 0 1
chr3:58171685|58171910 hsa-miR-625-3p 0 0 1
chr3:58171685|58171910 hsa-miR-646 0 0 1
chr3:58171685|58171910 hsa-miR-298 1 1 1
chr3:58171685|58171910 hsa-miR-1299 0 0 1
chr3:58171685|58171910 hsa-miR-1275 1 1 1
chr3:58171685|58171910 hsa-miR-1324 0 0 1
chr3:58171685|58171910 hsa-miR-193a-5p 1 1 1
chr3:58171685|58171910 hsa-miR-876-3p 0 0 1
chr3:58171685|58171910 hsa-miR-875-3p 0 0 1
chr3:58171685|58171910 hsa-miR-590-5p 0 0 1
chr3:58171685|58171910 hsa-miR-323-5p 0 0 1
chr3:58171685|58171910 hsa-miR-1308 0 0 1
chr3:58171685|58171910 hsa-miR-9 0 0 1
chr3:58171685|58171910 hsa-miR-644 0 0 1
chr3:58171685|58171910 hsa-miR-516b 0 0 1
chr3:58171685|58171910 hsa-miR-886-3p 0 0 1
chr3:58171685|58171910 hsa-miR-147 0 0 1
chr3:58171685|58171910 hsa-miR-658 1 0 0
chr3:58171685|58171910 hsa-miR-920 1 0 0
chr3:58171685|58171910 hsa-miR-921 1 0 0
chr3:58171685|58171910 hsa-miR-1268a 1 0 0
chr3:58171685|58171910 hsa-miR-3132 1 0 0
chr3:58171685|58171910 hsa-miR-3147 1 0 0
chr3:58171685|58171910 hsa-miR-3154 1 1 0
chr3:58171685|58171910 hsa-miR-3175 1 1 0
chr3:58171685|58171910 hsa-miR-4306 1 1 0
chr3:58171685|58171910 hsa-miR-4259 1 0 0
chr3:58171685|58171910 hsa-miR-3621 1 1 0
chr3:58171685|58171910 hsa-miR-1268b 1 0 0
chr3:58171685|58171910 hsa-miR-4425 1 0 0
chr3:58171685|58171910 hsa-miR-4436a 0 1 0
chr3:58171685|58171910 hsa-miR-4466 1 0 0
chr3:58171685|58171910 hsa-miR-4516 1 0 0
chr3:58171685|58171910 hsa-miR-4525 1 0 0
chr3:58171685|58171910 hsa-miR-4651 1 0 0
chr3:58171685|58171910 hsa-miR-4688 1 0 0
chr3:58171685|58171910 hsa-miR-4706 1 0 0
chr3:58171685|58171910 hsa-miR-4734 1 1 0
chr3:58171685|58171910 hsa-miR-5698 1 1 0
chr3:58171685|58171910 hsa-miR-5739 1 0 0
chr3:58171685|58171910 hsa-miR-5787 1 0 0
chr3:58171685|58171910 hsa-miR-6086 1 0 0
chr3:58171685|58171910 hsa-miR-6090 1 0 0
chr3:58171685|58171910 hsa-miR-8085 1 1 0
chr3:58171685|58171910 hsa-miR-4433b-3p 1 0 0
chr3:58171685|58171910 hsa-miR-92a-1-5p 1 0 0
chr3:58171685|58171910 hsa-miR-4700-3p 0 1 0
chr3:58171685|58171910 hsa-miR-6825-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6857-5p 1 0 0
chr3:58171685|58171910 hsa-miR-192-3p 1 0 0
chr3:58171685|58171910 hsa-miR-25-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6728-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6746-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6730-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6820-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6721-5p 1 1 0
chr3:58171685|58171910 hsa-miR-8069 1 1 0
chr3:58171685|58171910 hsa-miR-6716-5p 1 1 0
chr3:58171685|58171910 hsa-miR-6871-5p 1 0 0
chr3:58171685|58171910 hsa-miR-1292-5p 1 0 0
chr3:58171685|58171910 hsa-miR-3180-3p 1 0 0
chr3:58171685|58171910 hsa-miR-6772-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6770-5p 1 1 0
chr3:58171685|58171910 hsa-miR-6760-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6835-5p 1 0 0
chr3:58171685|58171910 hsa-miR-7109-5p 1 0 0
chr3:58171685|58171910 hsa-miR-1226-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6740-5p 1 0 0
chr3:58171685|58171910 hsa-miR-1247-5p 1 0 0
chr3:58171685|58171910 hsa-miR-4707-3p 1 1 0
chr3:58171685|58171910 hsa-miR-885-3p 1 0 0
chr3:58171685|58171910 hsa-miR-296-3p 1 0 0
chr3:58171685|58171910 hsa-miR-149-3p 1 0 0
chr3:58171685|58171910 hsa-miR-6824-5p 1 0 0
chr3:58171685|58171910 hsa-miR-3162-5p 1 0 0
chr3:58171685|58171910 hsa-miR-4715-5p 1 0 0
chr3:58171685|58171910 hsa-miR-5010-5p 1 0 0
chr3:58171685|58171910 hsa-miR-423-5p 1 0 0
chr3:58171685|58171910 hsa-miR-4687-5p 1 0 0
chr3:58171685|58171910 hsa-miR-3180-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6868-5p 1 0 0
chr3:58171685|58171910 hsa-miR-92a-3p 1 0 0
chr3:58171685|58171910 hsa-miR-4766-5p 1 0 0
chr3:58171685|58171910 hsa-miR-1228-3p 1 1 0
chr3:58171685|58171910 hsa-miR-425-5p 1 0 0
chr3:58171685|58171910 hsa-miR-4763-3p 1 0 0
chr3:58171685|58171910 hsa-miR-6870-5p 1 1 0
chr3:58171685|58171910 hsa-miR-1343-5p 1 0 0
chr3:58171685|58171910 hsa-miR-3180 1 0 0
chr3:58171685|58171910 hsa-miR-5001-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6726-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6743-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6756-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6803-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6819-5p 1 0 0
chr3:58171685|58171910 hsa-miR-1249-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6751-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6763-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6779-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6780a-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6797-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6879-5p 1 0 0
chr3:58171685|58171910 hsa-miR-7111-5p 1 1 0
chr3:58171685|58171910 hsa-miR-4728-5p 1 1 0
chr3:58171685|58171910 hsa-miR-5196-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6780b-5p 1 0 0
chr3:58171685|58171910 hsa-miR-1909-3p 1 0 0
chr3:58171685|58171910 hsa-miR-328-5p 1 0 0
chr3:58171685|58171910 hsa-miR-4632-5p 1 1 0
chr3:58171685|58171910 hsa-miR-675-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6795-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6858-5p 1 0 0
chr3:58171685|58171910 hsa-miR-4436b-3p 0 1 0
chr3:58171685|58171910 hsa-miR-4723-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6885-5p 1 0 0
chr3:58171685|58171910 hsa-miR-939-5p 1 0 0
chr3:58171685|58171910 hsa-miR-1910-3p 1 0 0
chr3:58171685|58171910 hsa-miR-6511a-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6731-5p 1 1 0
chr3:58171685|58171910 hsa-miR-6856-5p 1 0 0
chr3:58171685|58171910 hsa-miR-7843-5p 1 1 0
chr3:58171685|58171910 hsa-miR-4665-5p 1 0 0
chr3:58171685|58171910 hsa-miR-3116 1 0 0
chr3:58171685|58171910 hsa-miR-4700-5p 1 0 0
chr3:58171685|58171910 hsa-miR-4747-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6766-5p 1 0 0
chr3:58171685|58171910 hsa-miR-6792-3p 1 0 0
chr3:58171685|58171910 hsa-miR-320a-3p 1 0 0
chr3:58171685|58171910 hsa-miR-320b 1 0 0
chr3:58171685|58171910 hsa-miR-9851-3p 1 0 0
chr3:58171685|58171910 hsa-miR-483-3p 1 0 0
chr3:58171685|58171910 hsa-miR-92b-3p 1 0 0
chr3:58171685|58171910 hsa-miR-340-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:58171685|58171910
ORF Type ORF1
Protein Length 57
Nucleotide Length 174
Protein Sequence MDFCTTQLSLFLPMVKRPPISCCPSLPQPFPTFRPKTRRSFILSCLYRSLFSRKSDP
Nucleotide Sequence CTGGATTTCTGCACCACACAGCTCTCACTGTTTCTGCCAATGGTGAAAAGACCACCAATAAGCTGCTGCCCTTCTCTCCCCCAACCATTCCCAACTTTCAGGCCAAAGACCCGCAGGAGTTTCATTCTGTCCTGTCTGTACAGATCATTATTTTCCAGAAAAAGTGACCCATGA
CircID chr3:58171685|58171910
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MHHTALTVSANGEKTTNKLLPFSPPTIPNFQAKDPQEFHSVLSVQIIIFQKK
Nucleotide Sequence CTGCACCACACAGCTCTCACTGTTTCTGCCAATGGTGAAAAGACCACCAATAAGCTGCTGCCCTTCTCTCCCCCAACCATTCCCAACTTTCAGGCCAAAGACCCGCAGGAGTTTCATTCTGTCCTGTCTGTACAGATCATTATTTTCCAGAAAAAGTGA
CircID chr3:58171685|58171910
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MGMVGGEKGSSLLVVFSPLAETVRAVWCRNPEMR
Nucleotide Sequence TTGGGAATGGTTGGGGGAGAGAAGGGCAGCAGCTTATTGGTGGTCTTTTCACCATTGGCAGAAACAGTGAGAGCTGTGTGGTGCAGAAATCCAGAAATGAGG
CircID chr3:58171685|58171910
ORF Type ORF4
Protein Length 55
Nucleotide Length 165
Protein Sequence MENNDLYRQDRMKLLRVFGLKVGNGWGREGQQLIGGLFTIGRNSESCVVQKSRNE
Nucleotide Sequence CTGGAAAATAATGATCTGTACAGACAGGACAGAATGAAACTCCTGCGGGTCTTTGGCCTGAAAGTTGGGAATGGTTGGGGGAGAGAAGGGCAGCAGCTTATTGGTGGTCTTTTCACCATTGGCAGAAACAGTGAGAGCTGTGTGGTGCAGAAATCCAGAAATGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab