CircRNA Information

General Information
circRNA Basic Information
CircID chr3:66380293|66380489
Strand -
CircType exon
Host Gene ENSG00000144741.16;
Algorism CIRI2;
Sequence CCTCTGTTTCCCGGGGAGCTGTCCTGTCAGTGGCGTGGACTCGGGACTGGCGTCACATGCTTTGGGGAGGTGGCCATTGGAAACAAGCAAGTACTGGGCTTCCGCGCGCTCTGGACTGCCTGAAGTTAATGAAGATGCAGGCTGTAGCTCTGTGGAGTCCGGGTGATACAACCTTGCTAAAGTCCAGGAAGAATCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:66380293|66380489 hsa-miR-198 0 0 1
chr3:66380293|66380489 hsa-miR-422a 0 0 1
chr3:66380293|66380489 hsa-miR-588 0 0 1
chr3:66380293|66380489 hsa-miR-596 0 0 1
chr3:66380293|66380489 hsa-miR-671-5p 0 1 1
chr3:66380293|66380489 hsa-miR-770-5p 0 0 1
chr3:66380293|66380489 hsa-miR-525-5p 0 0 1
chr3:66380293|66380489 hsa-miR-330-3p 0 0 1
chr3:66380293|66380489 hsa-miR-520a-5p 0 0 1
chr3:66380293|66380489 hsa-miR-455-3p 0 0 1
chr3:66380293|66380489 hsa-miR-378 0 0 1
chr3:66380293|66380489 hsa-miR-548v 0 1 0
chr3:66380293|66380489 hsa-miR-378c 1 1 0
chr3:66380293|66380489 hsa-miR-4252 0 1 0
chr3:66380293|66380489 hsa-miR-3660 0 1 0
chr3:66380293|66380489 hsa-miR-378e 0 1 0
chr3:66380293|66380489 hsa-miR-378f 0 1 0
chr3:66380293|66380489 hsa-miR-4449 0 1 0
chr3:66380293|66380489 hsa-miR-378h 1 0 0
chr3:66380293|66380489 hsa-miR-4526 0 1 0
chr3:66380293|66380489 hsa-miR-4692 0 1 0
chr3:66380293|66380489 hsa-miR-4767 1 0 0
chr3:66380293|66380489 hsa-miR-4700-3p 0 1 0
chr3:66380293|66380489 hsa-miR-1247-3p 0 1 0
chr3:66380293|66380489 hsa-miR-6875-3p 1 1 0
chr3:66380293|66380489 hsa-miR-181a-2-3p 0 1 0
chr3:66380293|66380489 hsa-miR-1343-3p 1 0 0
chr3:66380293|66380489 hsa-miR-4638-3p 1 0 0
chr3:66380293|66380489 hsa-miR-1306-5p 0 1 0
chr3:66380293|66380489 hsa-miR-7112-5p 1 0 0
chr3:66380293|66380489 hsa-miR-584-3p 0 1 0
chr3:66380293|66380489 hsa-miR-449c-5p 0 1 0
chr3:66380293|66380489 hsa-miR-4685-5p 1 0 0
chr3:66380293|66380489 hsa-miR-378a-3p 0 1 0
chr3:66380293|66380489 hsa-miR-5009-5p 0 1 0
chr3:66380293|66380489 hsa-miR-4701-5p 0 1 0
chr3:66380293|66380489 hsa-miR-6783-3p 1 0 0
chr3:66380293|66380489 hsa-miR-4659b-3p 0 1 0
chr3:66380293|66380489 hsa-miR-374b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:66380293|66380489
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MFPGELSCQWRGLGTGVTCFGEVAIGNKQVLGFRALWTA
Nucleotide Sequence CTGTTTCCCGGGGAGCTGTCCTGTCAGTGGCGTGGACTCGGGACTGGCGTCACATGCTTTGGGGAGGTGGCCATTGGAAACAAGCAAGTACTGGGCTTCCGCGCGCTCTGGACTGCCTGA
CircID chr3:66380293|66380489
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MASHALGRWPLETSKYWASARSGLPEVNEDAGCSSVESG
Nucleotide Sequence CTGGCGTCACATGCTTTGGGGAGGTGGCCATTGGAAACAAGCAAGTACTGGGCTTCCGCGCGCTCTGGACTGCCTGAAGTTAATGAAGATGCAGGCTGTAGCTCTGTGGAGTCCGGGTGA
CircID chr3:66380293|66380489
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MSVAWTRDWRHMLWGGGHWKQASTGLPRALDCLKLMKMQAVALWSPGDTTLLKSRKNP
Nucleotide Sequence CTGTCAGTGGCGTGGACTCGGGACTGGCGTCACATGCTTTGGGGAGGTGGCCATTGGAAACAAGCAAGTACTGGGCTTCCGCGCGCTCTGGACTGCCTGAAGTTAATGAAGATGCAGGCTGTAGCTCTGTGGAGTCCGGGTGATACAACCTTGCTAAAGTCCAGGAAGAATCCC
CircID chr3:66380293|66380489
ORF Type ORF4
Protein Length 44
Nucleotide Length 135
Protein Sequence MDFSKVVSPGLHRATACIFINFRQSRARGSPVLACFQWPPPQSM
Nucleotide Sequence CTGGACTTTAGCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGCATCTTCATTAACTTCAGGCAGTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAATGGCCACCTCCCCAAAGCATGTGA
CircID chr3:66380293|66380489
ORF Type ORF5
Protein Length 57
Nucleotide Length 171
Protein Sequence MYHPDSTELQPASSLTSGSPERAEAQYLLVSNGHLPKACDASPESTPLTGQLPGKQR
Nucleotide Sequence TTGTATCACCCGGACTCCACAGAGCTACAGCCTGCATCTTCATTAACTTCAGGCAGTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAATGGCCACCTCCCCAAAGCATGTGACGCCAGTCCCGAGTCCACGCCACTGACAGGACAGCTCCCCGGGAAACAGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab