CircRNA Information

General Information
circRNA Basic Information
CircID chr3:69104499|69104811
Strand -
CircType exon
Host Gene ENSG00000144746.6;
Algorism CIRI2;
Sequence CTCAAGAACAAACTGGAGAATAAAATGGAAGGAATAGGTTTGAAGAGGACACCGATGGGCATTGTCCTGGATGCCCTAGAACAGCAGGAAGAAGGCATCAACAGACTCACTGACTATATCAGCAAAGTGAAGGAATAAACATAACTTACCTGAGCTAGGGTTGCAGCAGAAATTGAGTTGCAGCTTGCCCTTGTCCAGACCTATGTTCTGCTTGCGTTTTTGAAACAGGAGGTGCACGTACCACCCAATTATCTATGGCAGCATGCATGTATAGGCCGAACTATTATCAGCTCTGATGTTTCAGAGAGAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:69104499|69104811 hsa-miR-205-5p 0 0 1
chr3:69104499|69104811 hsa-miR-205-3p 0 0 1
chr3:69104499|69104811 hsa-miR-370-5p 0 0 1
chr3:69104499|69104811 hsa-miR-370-3p 0 0 1
chr3:69104499|69104811 hsa-miR-375-5p 0 0 1
chr3:69104499|69104811 hsa-miR-375-3p 0 0 1
chr3:69104499|69104811 hsa-miR-422a 0 0 1
chr3:69104499|69104811 hsa-miR-494-5p 0 0 1
chr3:69104499|69104811 hsa-miR-494-3p 0 0 1
chr3:69104499|69104811 hsa-miR-526b-5p 0 0 1
chr3:69104499|69104811 hsa-miR-526b-3p 0 0 1
chr3:69104499|69104811 hsa-miR-577 0 0 1
chr3:69104499|69104811 hsa-miR-607 0 0 1
chr3:69104499|69104811 hsa-miR-627-5p 0 0 1
chr3:69104499|69104811 hsa-miR-627-3p 0 0 1
chr3:69104499|69104811 hsa-miR-633 0 0 1
chr3:69104499|69104811 hsa-miR-766-5p 0 0 1
chr3:69104499|69104811 hsa-miR-766-3p 0 0 1
chr3:69104499|69104811 hsa-miR-891b 0 0 1
chr3:69104499|69104811 hsa-miR-665 0 0 1
chr3:69104499|69104811 hsa-miR-924 1 0 1
chr3:69104499|69104811 hsa-miR-942-5p 0 0 1
chr3:69104499|69104811 hsa-miR-942-3p 0 0 1
chr3:69104499|69104811 hsa-miR-1234-3p 0 0 1
chr3:69104499|69104811 hsa-miR-1293 0 0 1
chr3:69104499|69104811 hsa-miR-1248 0 0 1
chr3:69104499|69104811 hsa-miR-1262 0 0 1
chr3:69104499|69104811 hsa-miR-1267 0 0 1
chr3:69104499|69104811 hsa-miR-1284 0 0 1
chr3:69104499|69104811 hsa-miR-1234 0 0 1
chr3:69104499|69104811 hsa-miR-145-5p 0 0 1
chr3:69104499|69104811 hsa-miR-532-5p 0 0 1
chr3:69104499|69104811 hsa-miR-628-5p 0 0 1
chr3:69104499|69104811 hsa-miR-515-5p 0 0 1
chr3:69104499|69104811 hsa-miR-378 0 0 1
chr3:69104499|69104811 hsa-miR-544 0 0 1
chr3:69104499|69104811 hsa-miR-365 0 0 1
chr3:69104499|69104811 hsa-miR-602 1 0 0
chr3:69104499|69104811 hsa-miR-608 1 0 0
chr3:69104499|69104811 hsa-miR-612 1 0 0
chr3:69104499|69104811 hsa-miR-4656 1 0 0
chr3:69104499|69104811 hsa-miR-6069 1 0 0
chr3:69104499|69104811 hsa-miR-8075 1 0 0
chr3:69104499|69104811 hsa-miR-18a-3p 1 0 0
chr3:69104499|69104811 hsa-miR-6854-5p 1 0 0
chr3:69104499|69104811 hsa-miR-6850-5p 1 0 0
chr3:69104499|69104811 hsa-miR-3934-3p 1 0 0
chr3:69104499|69104811 hsa-miR-3667-3p 1 0 0
chr3:69104499|69104811 hsa-miR-181b-5p 1 0 0
chr3:69104499|69104811 hsa-miR-5001-5p 1 0 0
chr3:69104499|69104811 hsa-miR-3085-5p 1 0 0
chr3:69104499|69104811 hsa-miR-6817-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:69104499|69104811
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MENKMEGIGLKRTPMGIVLDALEQQEEGINRLTDYISKVKE
Nucleotide Sequence CTGGAGAATAAAATGGAAGGAATAGGTTTGAAGAGGACACCGATGGGCATTGTCCTGGATGCCCTAGAACAGCAGGAAGAAGGCATCAACAGACTCACTGACTATATCAGCAAAGTGAAGGAATAA
CircID chr3:69104499|69104811
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MQLALVQTYVLLAFLKQEVHVPPNYLWQHACIGRTIISSDVSERR
Nucleotide Sequence TTGCAGCTTGCCCTTGTCCAGACCTATGTTCTGCTTGCGTTTTTGAAACAGGAGGTGCACGTACCACCCAATTATCTATGGCAGCATGCATGTATAGGCCGAACTATTATCAGCTCTGATGTTTCAGAGAGAAGA
CircID chr3:69104499|69104811
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MHAAIDNWVVRAPPVSKTQAEHRSGQGQAATQFLLQP
Nucleotide Sequence ATGCATGCTGCCATAGATAATTGGGTGGTACGTGCACCTCCTGTTTCAAAAACGCAAGCAGAACATAGGTCTGGACAAGGGCAAGCTGCAACTCAATTTCTGCTGCAACCCTAG
CircID chr3:69104499|69104811
ORF Type ORF4
Protein Length 50
Nucleotide Length 153
Protein Sequence MFQKRKQNIGLDKGKLQLNFCCNPSSGKLCLFLHFADIVSESVDAFFLLF
Nucleotide Sequence CTGTTTCAAAAACGCAAGCAGAACATAGGTCTGGACAAGGGCAAGCTGCAACTCAATTTCTGCTGCAACCCTAGCTCAGGTAAGTTATGTTTATTCCTTCACTTTGCTGATATAGTCAGTGAGTCTGTTGATGCCTTCTTCCTGCTGTTCTAG
CircID chr3:69104499|69104811
ORF Type ORF5
Protein Length 34
Nucleotide Length 102
Protein Sequence MLMPSSCCSRASRTMPIGVLFKPIPSILFSSLFL
Nucleotide Sequence CTGTTGATGCCTTCTTCCTGCTGTTCTAGGGCATCCAGGACAATGCCCATCGGTGTCCTCTTCAAACCTATTCCTTCCATTTTATTCTCCAGTTTGTTCTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab