CircRNA Information

General Information
circRNA Basic Information
CircID chr3:87253460|87253813
Strand +
CircType exon
Host Gene ENSG00000083937.7;
Algorism CIRI2;
Sequence TCCTAAAGCCTTGAGTTGCCGTTCAATCTCTTCATCTGAGATTGTAGCCTTTGAAGTAGAGGCAGATGGTAAGCTTCGAGCAGCTGATGGAGCTTTGGCCATCTATATTAAACAATGAAAAAGACAAACGTGCATTAGGAAACATTTGGACTAGGACATACAGGATGTGCTGTAAAGAGGTCTGTTTAATTTACTTTTGAAACAGAAATAAAAACCATGCACCTCCTAGTAAAAACAAAACAATTAAGTGACAAACGTGGTAGGCAGAAACTATTTCCAACTAAGAAAAGATGATGTTCATACCTTTCCAGAAATTTCAATTCCAATTTCATCAAGAACTTGATTCACAATATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:87253460|87253813 hsa-miR-216a-5p 0 0 1
chr3:87253460|87253813 hsa-miR-216a-3p 0 0 1
chr3:87253460|87253813 hsa-miR-384 0 0 1
chr3:87253460|87253813 hsa-miR-511-5p 0 0 1
chr3:87253460|87253813 hsa-miR-511-3p 0 0 1
chr3:87253460|87253813 hsa-miR-526b-5p 0 0 1
chr3:87253460|87253813 hsa-miR-526b-3p 0 0 1
chr3:87253460|87253813 hsa-miR-554 0 0 1
chr3:87253460|87253813 hsa-miR-559 0 0 1
chr3:87253460|87253813 hsa-miR-567 0 0 1
chr3:87253460|87253813 hsa-miR-607 0 0 1
chr3:87253460|87253813 hsa-miR-651-5p 0 0 1
chr3:87253460|87253813 hsa-miR-651-3p 0 0 1
chr3:87253460|87253813 hsa-miR-668-5p 0 0 1
chr3:87253460|87253813 hsa-miR-668-3p 0 0 1
chr3:87253460|87253813 hsa-miR-889-5p 0 0 1
chr3:87253460|87253813 hsa-miR-889-3p 0 0 1
chr3:87253460|87253813 hsa-miR-887-5p 0 0 1
chr3:87253460|87253813 hsa-miR-887-3p 0 0 1
chr3:87253460|87253813 hsa-miR-297 0 0 1
chr3:87253460|87253813 hsa-miR-548j-5p 0 0 1
chr3:87253460|87253813 hsa-miR-548j-3p 0 0 1
chr3:87253460|87253813 hsa-miR-1299 0 0 1
chr3:87253460|87253813 hsa-miR-1257 0 0 1
chr3:87253460|87253813 hsa-miR-548n 0 0 1
chr3:87253460|87253813 hsa-miR-548m 0 0 1
chr3:87253460|87253813 hsa-miR-486-5p 0 0 1
chr3:87253460|87253813 hsa-miR-1207-3p 0 0 1
chr3:87253460|87253813 hsa-miR-875-3p 0 0 1
chr3:87253460|87253813 hsa-miR-513a-3p 0 0 1
chr3:87253460|87253813 hsa-miR-548b-5p 0 0 1
chr3:87253460|87253813 hsa-miR-548d-5p 0 0 1
chr3:87253460|87253813 hsa-miR-548c-5p 0 0 1
chr3:87253460|87253813 hsa-miR-548a-5p 0 0 1
chr3:87253460|87253813 hsa-miR-548i 0 0 1
chr3:87253460|87253813 hsa-miR-516b 0 0 1
chr3:87253460|87253813 hsa-miR-544 0 0 1
chr3:87253460|87253813 hsa-miR-203 0 0 1
chr3:87253460|87253813 hsa-miR-548h 0 0 1
chr3:87253460|87253813 hsa-miR-643 0 1 0
chr3:87253460|87253813 hsa-miR-548s 0 1 0
chr3:87253460|87253813 hsa-miR-5186 0 1 0
chr3:87253460|87253813 hsa-miR-4435 0 1 0
chr3:87253460|87253813 hsa-miR-3677-5p 1 0 0
chr3:87253460|87253813 hsa-miR-33a-3p 0 1 0
chr3:87253460|87253813 hsa-miR-3194-5p 1 0 0
chr3:87253460|87253813 hsa-miR-30b-3p 0 1 0
chr3:87253460|87253813 hsa-miR-5001-3p 0 1 0
chr3:87253460|87253813 hsa-miR-6821-3p 0 1 0
chr3:87253460|87253813 hsa-miR-6751-5p 1 0 0
chr3:87253460|87253813 hsa-miR-6779-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:87253460|87253813
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MHLLVKTKQLSDKRGRQKLFPTKKR
Nucleotide Sequence ATGCACCTCCTAGTAAAAACAAAACAATTAAGTGACAAACGTGGTAGGCAGAAACTATTTCCAACTAAGAAAAGATGA
CircID chr3:87253460|87253813
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MSCRSISSSEIVAFEVEADGKLRAADGALAIYIKQ
Nucleotide Sequence TTGAGTTGCCGTTCAATCTCTTCATCTGAGATTGTAGCCTTTGAAGTAGAGGCAGATGGTAAGCTTCGAGCAGCTGATGGAGCTTTGGCCATCTATATTAAACAATGA
CircID chr3:87253460|87253813
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MVSFEQLMELWPSILNNEKDKRALGNIWTRTYRMCCKEVCLIYF
Nucleotide Sequence ATGGTAAGCTTCGAGCAGCTGATGGAGCTTTGGCCATCTATATTAAACAATGAAAAAGACAAACGTGCATTAGGAAACATTTGGACTAGGACATACAGGATGTGCTGTAAAGAGGTCTGTTTAATTTACTTTTGA
CircID chr3:87253460|87253813
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MAKAPSAARSLPSASTSKATISDEEIERQLKALG
Nucleotide Sequence ATGGCCAAAGCTCCATCAGCTGCTCGAAGCTTACCATCTGCCTCTACTTCAAAGGCTACAATCTCAGATGAAGAGATTGAACGGCAACTCAAGGCTTTAGGA
CircID chr3:87253460|87253813
ORF Type ORF5
Protein Length 49
Nucleotide Length 150
Protein Sequence MMKLELKFLERYEHHLFLVGNSFCLPRLSLNCFVFTRRCMVFISVSKVN
Nucleotide Sequence TTGATGAAATTGGAATTGAAATTTCTGGAAAGGTATGAACATCATCTTTTCTTAGTTGGAAATAGTTTCTGCCTACCACGTTTGTCACTTAATTGTTTTGTTTTTACTAGGAGGTGCATGGTTTTTATTTCTGTTTCAAAAGTAAATTAA
CircID chr3:87253460|87253813
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MLEAYHLPLLQRLQSQMKRLNGNSRL
Nucleotide Sequence CTGCTCGAAGCTTACCATCTGCCTCTACTTCAAAGGCTACAATCTCAGATGAAGAGATTGAACGGCAACTCAAGGCTTTAG
CircID chr3:87253460|87253813
ORF Type ORF7
Protein Length 29
Nucleotide Length 90
Protein Sequence MEIVSAYHVCHLIVLFLLGGAWFLFLFQK
Nucleotide Sequence TTGGAAATAGTTTCTGCCTACCACGTTTGTCACTTAATTGTTTTGTTTTTACTAGGAGGTGCATGGTTTTTATTTCTGTTTCAAAAGTAA
CircID chr3:87253460|87253813
ORF Type ORF8
Protein Length 43
Nucleotide Length 132
Protein Sequence MYVLVQMFPNARLSFSLFNIDGQSSISCSKLTICLYFKGYNLR
Nucleotide Sequence CTGTATGTCCTAGTCCAAATGTTTCCTAATGCACGTTTGTCTTTTTCATTGTTTAATATAGATGGCCAAAGCTCCATCAGCTGCTCGAAGCTTACCATCTGCCTCTACTTCAAAGGCTACAATCTCAGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab