CircRNA Information

General Information
circRNA Basic Information
CircID chr3:89395837|89419390
Strand +
CircType exon
Host Gene ENSG00000044524.10;
Algorism find_circ;CIRI2;DCC;
Sequence CTCCATCACCTGTCCTGACGATTAAGAAAGATCGGACCTCCAGAAATAGCATCTCTTTGTCCTGGCAAGAACCTGAACATCCTAATGGGATCATATTGGACTACGAGGTCAAATACTATGAAAAGCAGGAACAAGAAACAAGTTATACCATTCTGAGGGCAAGAGGCACAAATGTTACCATCAGTAGCCTCAAGCCTGACACTATATACGTATTCCAAATCCGAGCCCGAACAGCCGCTGGATATGGGACGAACAGCCGCAAGTTTGAGTTTGAAACTAGTCCAGACTCTTTCTCCATCTCTGGTGAAAGTAGCCAAGTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCTCCTCACTGTTGTCATCTATGTTTTGATTGGGAGGTTCTGTGGCTATAAGTCAAAACATGGGGCAGATGAAAAAAGACTTCATTTTGGCAATGGGCATTTAAAACTTCCAGGTCTCAGGACTTATGTTGACCCACATACATATGAAGACCCTACCCAAGCTGTTCATGAGTTTGCCAAGGAATTGGATGCCACCAACATATCCATTGATAAAGTTGTTGGAGCAGGTGAATTTGGAGAGGTGTGCAGTGGTCGCTTAAAACTTCCTTCAAAAAAAGAGATTTCAGTGGCCATTAAGACCCTGAAAGTTGGCTACACAGAAAAGCAGAGGAGAGACTTCCTGGGAGAAGCAAGCATTATGGGACAGTTTGACCACCCCAATATCATTCGACTGGAAGGAGTTGTTACCAAAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:89395837|89419390
ORF Type ORF1
Protein Length 237
Nucleotide Length 711
Protein Sequence LSWQEPEHPNGIILDYEVKYYEKQEQETSYTILRARGTNVTISSLKPDTIYVFQIRARTAAGYGTNSRKFEFETSPDSFSISGESSQVVMIAISAAVAIILLTVVIYVLIGRFCGYKSKHGADEKRLHFGNGHLKLPGLRTYVDPHTYEDPTQAVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK
Nucleotide Sequence TTGTCCTGGCAAGAACCTGAACATCCTAATGGGATCATATTGGACTACGAGGTCAAATACTATGAAAAGCAGGAACAAGAAACAAGTTATACCATTCTGAGGGCAAGAGGCACAAATGTTACCATCAGTAGCCTCAAGCCTGACACTATATACGTATTCCAAATCCGAGCCCGAACAGCCGCTGGATATGGGACGAACAGCCGCAAGTTTGAGTTTGAAACTAGTCCAGACTCTTTCTCCATCTCTGGTGAAAGTAGCCAAGTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCTCCTCACTGTTGTCATCTATGTTTTGATTGGGAGGTTCTGTGGCTATAAGTCAAAACATGGGGCAGATGAAAAAAGACTTCATTTTGGCAATGGGCATTTAAAACTTCCAGGTCTCAGGACTTATGTTGACCCACATACATATGAAGACCCTACCCAAGCTGTTCATGAGTTTGCCAAGGAATTGGATGCCACCAACATATCCATTGATAAAGTTGTTGGAGCAGGTGAATTTGGAGAGGTGTGCAGTGGTCGCTTAAAACTTCCTTCAAAAAAAGAGATTTCAGTGGCCATTAAGACCCTGAAAGTTGGCTACACAGAAAAGCAGAGGAGAGACTTCCTGGGAGAAGCAAGCATTATGGGACAGTTTGACCACCCCAATATCATTCGACTGGAAGGAGTTGTTACCAAA
CircID chr3:89395837|89419390
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MTTVRRIIATAAEMAIMTTWLLSPEMEKESGLVSNSNLRLFVPYPAAVRARIWNTYIVSGLRLLMVTFVPLALRMV*
Nucleotide Sequence ATGACAACAGTGAGGAGAATAATTGCTACTGCCGCTGAAATGGCGATCATGACCACTTGGCTACTTTCACCAGAGATGGAGAAAGAGTCTGGACTAGTTTCAAACTCAAACTTGCGGCTGTTCGTCCCATATCCAGCGGCTGTTCGGGCTCGGATTTGGAATACGTATATAGTGTCAGGCTTGAGGCTACTGATGGTAACATTTGTGCCTCTTGCCCTCAGAATGGTATAA
CircID chr3:89395837|89419390
ORF Type ORF3
Protein Length 104
Nucleotide Length 312
Protein Sequence LATFTRDGERVWTSFKLKLAAVRPISSGCSGSDLEYVYSVRLEATDGNICASCPQNGITCFLFLLFIVFDLVVQYDPIRMFRFLPGQRDAISGGPIFLNRQDR*
Nucleotide Sequence TTGGCTACTTTCACCAGAGATGGAGAAAGAGTCTGGACTAGTTTCAAACTCAAACTTGCGGCTGTTCGTCCCATATCCAGCGGCTGTTCGGGCTCGGATTTGGAATACGTATATAGTGTCAGGCTTGAGGCTACTGATGGTAACATTTGTGCCTCTTGCCCTCAGAATGGTATAACTTGTTTCTTGTTCCTGCTTTTCATAGTATTTGACCTCGTAGTCCAATATGATCCCATTAGGATGTTCAGGTTCTTGCCAGGACAAAGAGATGCTATTTCTGGAGGTCCGATCTTTCTTAATCGTCAGGACAGGTGA
CircID chr3:89395837|89419390
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MLPSVASSLTLYTYSKSEPEQPLDMGRTAASLSLKLVQTLSPSLVKVAKWS*
Nucleotide Sequence ATGTTACCATCAGTAGCCTCAAGCCTGACACTATATACGTATTCCAAATCCGAGCCCGAACAGCCGCTGGATATGGGACGAACAGCCGCAAGTTTGAGTTTGAAACTAGTCCAGACTCTTTCTCCATCTCTGGTGAAAGTAGCCAAGTGGTCATGA
CircID chr3:89395837|89419390
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MLTHIHMKTLPKLFMSLPRNWMPPTYPLIKLLEQVNLERCAVVA*
Nucleotide Sequence ATGTTGACCCACATACATATGAAGACCCTACCCAAGCTGTTCATGAGTTTGCCAAGGAATTGGATGCCACCAACATATCCATTGATAAAGTTGTTGGAGCAGGTGAATTTGGAGAGGTGTGCAGTGGTCGCTTAA
CircID chr3:89395837|89419390
ORF Type ORF6
Protein Length 43
Nucleotide Length 129
Protein Sequence MATEISFFEGSFKRPLHTSPNSPAPTTLSMDMLVASNSLANS*
Nucleotide Sequence ATGGCCACTGAAATCTCTTTTTTTGAAGGAAGTTTTAAGCGACCACTGCACACCTCTCCAAATTCACCTGCTCCAACAACTTTATCAATGGATATGTTGGTGGCATCCAATTCCTTGGCAAACTCATGA
CircID chr3:89395837|89419390
ORF Type ORF7
Protein Length 31
Nucleotide Length 93
Protein Sequence MIPLGCSGSCQDKEMLFLEVRSFLIVRTGDG
Nucleotide Sequence ATGATCCCATTAGGATGTTCAGGTTCTTGCCAGGACAAAGAGATGCTATTTCTGGAGGTCCGATCTTTCTTAATCGTCAGGACAGGTGATGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:89395837|89419390 TAF15 1 1 0
chr3:89395837|89419390 FBL 1 0 0
chr3:89395837|89419390 NOP58 0 0 5
chr3:89395837|89419390 CSTF2T 0 0 1
chr3:89395837|89419390 DDX54 0 0 12
chr3:89395837|89419390 FUS 0 1 0
chr3:89395837|89419390 WDR33 1 0 0
chr3:89395837|89419390 IGF2BP2 4 2 7
chr3:89395837|89419390 AGO2 0 1 0
chr3:89395837|89419390 EIF4A3 0 0 1
chr3:89395837|89419390 ELAVL1 2 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab