CircRNA Information

General Information
circRNA Basic Information
CircID chr3:9789549|9789815
Strand -
CircType exon
Host Gene ENSG00000171148.12;
Algorism CIRI2;
Sequence TCCTCAAGTGTGCGGACCTCCTCGCTGGTGATGTCAGCACAGTAGGGCTCCACTGAAGCCCAGAACCTGCAGGGAGAAGCAGATCCTGAGTGGGCGCCCCTGCCCCACCAGTGCCTCCACCACCAGAACCTTGAGGCCCCCTTCTATGTTCTCTAGCCCAGAACCTGTTGGGGGCATCATTTTTGGGGATCCGTGGCACGTCGATAGGGTCATCAGTGAATTCATATTCCTGGATCTTGGGCTGAAGGTTTTTGGATTTGGGCCGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:9789549|9789815 hsa-miR-376c-5p 0 0 1
chr3:9789549|9789815 hsa-miR-376c-3p 0 0 1
chr3:9789549|9789815 hsa-miR-489-5p 0 0 1
chr3:9789549|9789815 hsa-miR-489-3p 0 0 1
chr3:9789549|9789815 hsa-miR-504-5p 0 0 1
chr3:9789549|9789815 hsa-miR-504-3p 0 0 1
chr3:9789549|9789815 hsa-miR-510-5p 0 0 1
chr3:9789549|9789815 hsa-miR-510-3p 0 0 1
chr3:9789549|9789815 hsa-miR-612 0 0 1
chr3:9789549|9789815 hsa-miR-650 1 0 1
chr3:9789549|9789815 hsa-miR-657 0 1 1
chr3:9789549|9789815 hsa-miR-892a 0 0 1
chr3:9789549|9789815 hsa-miR-541-5p 0 0 1
chr3:9789549|9789815 hsa-miR-541-3p 0 0 1
chr3:9789549|9789815 hsa-miR-665 0 0 1
chr3:9789549|9789815 hsa-miR-1226-5p 0 0 1
chr3:9789549|9789815 hsa-miR-1226-3p 0 0 1
chr3:9789549|9789815 hsa-miR-1227-5p 0 0 1
chr3:9789549|9789815 hsa-miR-1227-3p 0 0 1
chr3:9789549|9789815 hsa-miR-1205 0 1 1
chr3:9789549|9789815 hsa-miR-1322 0 0 1
chr3:9789549|9789815 hsa-miR-127-3p 0 0 1
chr3:9789549|9789815 hsa-miR-1224-5p 0 0 1
chr3:9789549|9789815 hsa-miR-486-3p 1 0 1
chr3:9789549|9789815 hsa-miR-654-5p 0 0 1
chr3:9789549|9789815 hsa-miR-876-3p 0 0 1
chr3:9789549|9789815 hsa-miR-628-5p 0 1 1
chr3:9789549|9789815 hsa-miR-1207-5p 0 0 1
chr3:9789549|9789815 hsa-miR-548d-3p 0 0 1
chr3:9789549|9789815 hsa-miR-151-5p 0 0 1
chr3:9789549|9789815 hsa-miR-1233 0 0 1
chr3:9789549|9789815 hsa-miR-323-5p 0 0 1
chr3:9789549|9789815 hsa-miR-1285 0 0 1
chr3:9789549|9789815 hsa-miR-499-3p 0 0 1
chr3:9789549|9789815 hsa-miR-632 1 0 0
chr3:9789549|9789815 hsa-miR-663a 1 0 0
chr3:9789549|9789815 hsa-miR-760 1 0 0
chr3:9789549|9789815 hsa-miR-940 1 0 0
chr3:9789549|9789815 hsa-miR-1183 1 0 0
chr3:9789549|9789815 hsa-miR-1291 1 0 0
chr3:9789549|9789815 hsa-miR-4420 0 1 0
chr3:9789549|9789815 hsa-miR-378g 0 1 0
chr3:9789549|9789815 hsa-miR-4443 0 1 0
chr3:9789549|9789815 hsa-miR-4452 0 1 0
chr3:9789549|9789815 hsa-miR-4686 0 1 0
chr3:9789549|9789815 hsa-miR-9899 0 1 0
chr3:9789549|9789815 hsa-miR-12115 1 1 0
chr3:9789549|9789815 hsa-miR-12127 1 0 0
chr3:9789549|9789815 hsa-miR-3194-3p 1 0 0
chr3:9789549|9789815 hsa-miR-6880-5p 1 1 0
chr3:9789549|9789815 hsa-miR-4695-5p 1 0 0
chr3:9789549|9789815 hsa-miR-6721-5p 1 1 0
chr3:9789549|9789815 hsa-miR-3151-5p 0 1 0
chr3:9789549|9789815 hsa-miR-6786-5p 1 0 0
chr3:9789549|9789815 hsa-miR-7113-3p 0 1 0
chr3:9789549|9789815 hsa-miR-1228-5p 1 0 0
chr3:9789549|9789815 hsa-miR-6789-5p 1 0 0
chr3:9789549|9789815 hsa-miR-3925-5p 0 1 0
chr3:9789549|9789815 hsa-miR-7112-5p 1 0 0
chr3:9789549|9789815 hsa-miR-24-2-5p 0 1 0
chr3:9789549|9789815 hsa-miR-24-1-5p 0 1 0
chr3:9789549|9789815 hsa-miR-6837-3p 0 1 0
chr3:9789549|9789815 hsa-miR-5009-3p 0 1 0
chr3:9789549|9789815 hsa-miR-10400-5p 1 0 0
chr3:9789549|9789815 hsa-miR-4763-3p 1 1 0
chr3:9789549|9789815 hsa-miR-6816-5p 1 0 0
chr3:9789549|9789815 hsa-miR-6743-5p 1 0 0
chr3:9789549|9789815 hsa-miR-6756-5p 1 0 0
chr3:9789549|9789815 hsa-miR-6769a-5p 1 0 0
chr3:9789549|9789815 hsa-miR-6803-5p 1 0 0
chr3:9789549|9789815 hsa-miR-1237-5p 1 0 0
chr3:9789549|9789815 hsa-miR-1909-3p 0 1 0
chr3:9789549|9789815 hsa-miR-328-5p 1 0 0
chr3:9789549|9789815 hsa-miR-4664-5p 1 1 0
chr3:9789549|9789815 hsa-miR-6791-5p 1 0 0
chr3:9789549|9789815 hsa-miR-6783-3p 1 0 0
chr3:9789549|9789815 hsa-miR-10394-5p 0 1 0
chr3:9789549|9789815 hsa-miR-6737-3p 0 1 0
chr3:9789549|9789815 hsa-miR-7155-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:9789549|9789815
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MQGEADPEWAPLPHQCLHHQNLEAPFYVL
Nucleotide Sequence CTGCAGGGAGAAGCAGATCCTGAGTGGGCGCCCCTGCCCCACCAGTGCCTCCACCACCAGAACCTTGAGGCCCCCTTCTATGTTCTCTAG
CircID chr3:9789549|9789815
ORF Type ORF2
Protein Length 71
Nucleotide Length 213
Protein Sequence MKPRTCREKQILSGRPCPTSASTTRTLRPPSMFSSPEPVGGIIFGDPWHVDRVISEFIFLDLGLKVFGFGP
Nucleotide Sequence CTGAAGCCCAGAACCTGCAGGGAGAAGCAGATCCTGAGTGGGCGCCCCTGCCCCACCAGTGCCTCCACCACCAGAACCTTGAGGCCCCCTTCTATGTTCTCTAGCCCAGAACCTGTTGGGGGCATCATTTTTGGGGATCCGTGGCACGTCGATAGGGTCATCAGTGAATTCATATTCCTGGATCTTGGGCTGAAGGTTTTTGGATTTGGGCCG
CircID chr3:9789549|9789815
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MLGASFLGIRGTSIGSSVNSYSWILG
Nucleotide Sequence CTGTTGGGGGCATCATTTTTGGGGATCCGTGGCACGTCGATAGGGTCATCAGTGAATTCATATTCCTGGATCTTGGGCTGA
CircID chr3:9789549|9789815
ORF Type ORF4
Protein Length 63
Nucleotide Length 192
Protein Sequence MNSLMTLSTCHGSPKMMPPTGSGLENIEGGLKVLVVEALVGQGRPLRICFSLQVLGFSGALLC
Nucleotide Sequence ATGAATTCACTGATGACCCTATCGACGTGCCACGGATCCCCAAAAATGATGCCCCCAACAGGTTCTGGGCTAGAGAACATAGAAGGGGGCCTCAAGGTTCTGGTGGTGGAGGCACTGGTGGGGCAGGGGCGCCCACTCAGGATCTGCTTCTCCCTGCAGGTTCTGGGCTTCAGTGGAGCCCTACTGTGCTGA
CircID chr3:9789549|9789815
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MLLPAGSGLQWSPTVLTSPARRSAHLR
Nucleotide Sequence CTGCTTCTCCCTGCAGGTTCTGGGCTTCAGTGGAGCCCTACTGTGCTGACATCACCAGCGAGGAGGTCCGCACACTTGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab