CircRNA Information

General Information
circRNA Basic Information
CircID chr3:98849461|98881767
Strand -
CircType exon
Host Gene ENSG00000057019.15;
Algorism find_circ;CIRI2;DCC;
Sequence GTGATGGATGTGGACACACTGTACTAGGCCCTGAGAGTGGAACCCTTACATCCATAAACTACCCACAGACCTATCCCAACAGCACTGTTTGTGAATGGGAGATCCGTGTAAAGATGGGAGAGAGAGTTCGCATCAAATTTGGTGACTTTGACATTGAAGATTCTGATTCTTGTCACTTTAATTACTTGAGAATTTATAATGGAATTGGAGTCAGCAGAACTGAAATAGGCAAATACTGTGGTCTGGGGTTGCAAATGAACCATTCAATTGAATCAAAAGGCAATGAAATCACATTGCTGTTCATGAGTGGAATCCATGTTTCTGGACGCGGATTTTTGGCCTCATACTCTGTTATAGATAAACAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:98849461|98881767 hsa-miR-23a-5p 0 0 1
chr3:98849461|98881767 hsa-miR-23a-3p 0 0 1
chr3:98849461|98881767 hsa-miR-214-5p 0 0 1
chr3:98849461|98881767 hsa-miR-214-3p 0 0 1
chr3:98849461|98881767 hsa-miR-200b-5p 0 0 1
chr3:98849461|98881767 hsa-miR-200b-3p 0 0 1
chr3:98849461|98881767 hsa-miR-23b-5p 0 0 1
chr3:98849461|98881767 hsa-miR-23b-3p 0 0 1
chr3:98849461|98881767 hsa-miR-185-5p 0 0 1
chr3:98849461|98881767 hsa-miR-185-3p 0 0 1
chr3:98849461|98881767 hsa-miR-200c-5p 0 0 1
chr3:98849461|98881767 hsa-miR-200c-3p 0 0 1
chr3:98849461|98881767 hsa-miR-374a-5p 0 0 1
chr3:98849461|98881767 hsa-miR-374a-3p 0 0 1
chr3:98849461|98881767 hsa-miR-422a 0 0 1
chr3:98849461|98881767 hsa-miR-429 0 0 1
chr3:98849461|98881767 hsa-miR-433-5p 0 0 1
chr3:98849461|98881767 hsa-miR-433-3p 0 0 1
chr3:98849461|98881767 hsa-miR-452-5p 0 0 1
chr3:98849461|98881767 hsa-miR-452-3p 0 0 1
chr3:98849461|98881767 hsa-miR-489-5p 0 0 1
chr3:98849461|98881767 hsa-miR-489-3p 0 0 1
chr3:98849461|98881767 hsa-miR-527 0 0 1
chr3:98849461|98881767 hsa-miR-577 0 0 1
chr3:98849461|98881767 hsa-miR-578 0 0 1
chr3:98849461|98881767 hsa-miR-580-5p 0 0 1
chr3:98849461|98881767 hsa-miR-580-3p 0 0 1
chr3:98849461|98881767 hsa-miR-603 0 0 1
chr3:98849461|98881767 hsa-miR-637 0 0 1
chr3:98849461|98881767 hsa-miR-758-5p 0 0 1
chr3:98849461|98881767 hsa-miR-758-3p 0 0 1
chr3:98849461|98881767 hsa-miR-668-5p 0 0 1
chr3:98849461|98881767 hsa-miR-668-3p 0 0 1
chr3:98849461|98881767 hsa-miR-892a 0 0 1
chr3:98849461|98881767 hsa-miR-374b-5p 0 0 1
chr3:98849461|98881767 hsa-miR-374b-3p 0 0 1
chr3:98849461|98881767 hsa-miR-922 0 1 1
chr3:98849461|98881767 hsa-miR-1206 0 0 1
chr3:98849461|98881767 hsa-miR-1208 0 0 1
chr3:98849461|98881767 hsa-miR-1290 0 1 1
chr3:98849461|98881767 hsa-miR-1291 0 1 1
chr3:98849461|98881767 hsa-miR-1299 0 0 1
chr3:98849461|98881767 hsa-miR-1257 0 0 1
chr3:98849461|98881767 hsa-miR-1289 0 0 1
chr3:98849461|98881767 hsa-miR-125a-5p 0 1 1
chr3:98849461|98881767 hsa-miR-518a-5p 0 0 1
chr3:98849461|98881767 hsa-miR-125b 0 0 1
chr3:98849461|98881767 hsa-miR-378 0 0 1
chr3:98849461|98881767 hsa-miR-1300 0 0 1
chr3:98849461|98881767 hsa-miR-514 0 0 1
chr3:98849461|98881767 hsa-miR-516b 0 0 1
chr3:98849461|98881767 hsa-miR-1183 1 0 0
chr3:98849461|98881767 hsa-miR-3170 0 1 0
chr3:98849461|98881767 hsa-miR-3175 1 0 0
chr3:98849461|98881767 hsa-miR-3185 1 0 0
chr3:98849461|98881767 hsa-miR-4324 0 1 0
chr3:98849461|98881767 hsa-miR-2392 1 1 0
chr3:98849461|98881767 hsa-miR-4644 0 1 0
chr3:98849461|98881767 hsa-miR-4657 0 1 0
chr3:98849461|98881767 hsa-miR-4683 0 1 0
chr3:98849461|98881767 hsa-miR-5572 1 0 0
chr3:98849461|98881767 hsa-miR-6128 1 1 0
chr3:98849461|98881767 hsa-miR-7976 0 1 0
chr3:98849461|98881767 hsa-miR-8085 1 1 0
chr3:98849461|98881767 hsa-miR-6804-5p 1 0 0
chr3:98849461|98881767 hsa-miR-139-3p 1 0 0
chr3:98849461|98881767 hsa-miR-7114-5p 1 0 0
chr3:98849461|98881767 hsa-miR-7160-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6820-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6871-5p 0 1 0
chr3:98849461|98881767 hsa-miR-4693-3p 0 1 0
chr3:98849461|98881767 hsa-miR-3691-5p 0 1 0
chr3:98849461|98881767 hsa-miR-4764-5p 0 1 0
chr3:98849461|98881767 hsa-miR-149-3p 1 0 0
chr3:98849461|98881767 hsa-miR-4680-5p 0 1 0
chr3:98849461|98881767 hsa-miR-3177-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6870-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6751-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6779-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6780a-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6788-5p 1 1 0
chr3:98849461|98881767 hsa-miR-4728-5p 1 0 0
chr3:98849461|98881767 hsa-miR-1238-5p 0 1 0
chr3:98849461|98881767 hsa-miR-4758-5p 1 1 0
chr3:98849461|98881767 hsa-miR-3198 0 1 0
chr3:98849461|98881767 hsa-miR-30c-1-3p 1 1 0
chr3:98849461|98881767 hsa-miR-6731-5p 1 1 0
chr3:98849461|98881767 hsa-miR-6856-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6736-5p 1 0 0
chr3:98849461|98881767 hsa-miR-6855-5p 1 1 0
chr3:98849461|98881767 hsa-miR-6775-3p 1 0 0
chr3:98849461|98881767 hsa-miR-497-5p 1 0 0
chr3:98849461|98881767 hsa-miR-129-1-3p 0 1 0
chr3:98849461|98881767 hsa-miR-125b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:98849461|98881767
ORF Type ORF1
Protein Length 84
Nucleotide Length 252
Protein Sequence MGERVRIKFGDFDIEDSDSCHFNYLRIYNGIGVSRTEIGKYCGLGLQMNHSIESKGNEITLLFMSGIHVSGRGFLASYSVIDKQ
Nucleotide Sequence ATGGGAGAGAGAGTTCGCATCAAATTTGGTGACTTTGACATTGAAGATTCTGATTCTTGTCACTTTAATTACTTGAGAATTTATAATGGAATTGGAGTCAGCAGAACTGAAATAGGCAAATACTGTGGTCTGGGGTTGCAAATGAACCATTCAATTGAATCAAAAGGCAATGAAATCACATTGCTGTTCATGAGTGGAATCCATGTTTCTGGACGCGGATTTTTGGCCTCATACTCTGTTATAGATAAACAA
CircID chr3:98849461|98881767
ORF Type ORF2
Protein Length 80
Nucleotide Length 240
Protein Sequence MVHLQPQTTVFAYFSSADSNSIINSQVIKVTRIRIFNVKVTKFDANSLSHLYTDLPFTNSAVGIGLWVVYGCKGSTLRA*
Nucleotide Sequence ATGGTTCATTTGCAACCCCAGACCACAGTATTTGCCTATTTCAGTTCTGCTGACTCCAATTCCATTATAAATTCTCAAGTAATTAAAGTGACAAGAATCAGAATCTTCAATGTCAAAGTCACCAAATTTGATGCGAACTCTCTCTCCCATCTTTACACGGATCTCCCATTCACAAACAGTGCTGTTGGGATAGGTCTGTGGGTAGTTTATGGATGTAAGGGTTCCACTCTCAGGGCCTAG
CircID chr3:98849461|98881767
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MNSNVISLPFDSIEWFICNPRPQYLPISVLLTPIPL*
Nucleotide Sequence ATGAACAGCAATGTGATTTCATTGCCTTTTGATTCAATTGAATGGTTCATTTGCAACCCCAGACCACAGTATTTGCCTATTTCAGTTCTGCTGACTCCAATTCCATTATAA
CircID chr3:98849461|98881767
ORF Type ORF1
Protein Length 79
Nucleotide Length 240
Protein Sequence MVHLQPQTTVFAYFSSADSNSIINSQVIKVTRIRIFNVKVTKFDANSLSHLYTDLPFTNSAVGIGLWVVYGCKGSTLRA
Nucleotide Sequence ATGGTTCATTTGCAACCCCAGACCACAGTATTTGCCTATTTCAGTTCTGCTGACTCCAATTCCATTATAAATTCTCAAGTAATTAAAGTGACAAGAATCAGAATCTTCAATGTCAAAGTCACCAAATTTGATGCGAACTCTCTCTCCCATCTTTACACGGATCTCCCATTCACAAACAGTGCTGTTGGGATAGGTCTGTGGGTAGTTTATGGATGTAAGGGTTCCACTCTCAGGGCCTAG
CircID chr3:98849461|98881767
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MNSNVISLPFDSIEWFICNPRPQYLPISVLLTPIPL
Nucleotide Sequence ATGAACAGCAATGTGATTTCATTGCCTTTTGATTCAATTGAATGGTTCATTTGCAACCCCAGACCACAGTATTTGCCTATTTCAGTTCTGCTGACTCCAATTCCATTATAA
CircID chr3:98849461|98881767
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MSKSPNLMRTLSPIFTRISHSQTVLLG
Nucleotide Sequence ATGTCAAAGTCACCAAATTTGATGCGAACTCTCTCTCCCATCTTTACACGGATCTCCCATTCACAAACAGTGCTGTTGGGATAG
CircID chr3:98849461|98881767
ORF Type ORF4
Protein Length 84
Nucleotide Length 252
Protein Sequence MGERVRIKFGDFDIEDSDSCHFNYLRIYNGIGVSRTEIGKYCGLGLQMNHSIESKGNEITLLFMSGIHVSGRGFLASYSVIDKQ
Nucleotide Sequence ATGGGAGAGAGAGTTCGCATCAAATTTGGTGACTTTGACATTGAAGATTCTGATTCTTGTCACTTTAATTACTTGAGAATTTATAATGGAATTGGAGTCAGCAGAACTGAAATAGGCAAATACTGTGGTCTGGGGTTGCAAATGAACCATTCAATTGAATCAAAAGGCAATGAAATCACATTGCTGTTCATGAGTGGAATCCATGTTTCTGGACGCGGATTTTTGGCCTCATACTCTGTTATAGATAAACAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:98849461|98881767 KHSRP 0 2 0
chr3:98849461|98881767 ELAVL1 1 1 2
chr3:98849461|98881767 NUMA1 1 0 0
chr3:98849461|98881767 FAM120A 1 0 0
chr3:98849461|98881767 PRPF8 1 3 0
chr3:98849461|98881767 TAF15 1 0 0
chr3:98849461|98881767 FMR1 1 0 1
chr3:98849461|98881767 FUS 0 1 0
chr3:98849461|98881767 GNL3 0 1 0
chr3:98849461|98881767 SRSF7 0 0 1
chr3:98849461|98881767 SRSF1 2 0 5
chr3:98849461|98881767 NOP58 3 0 2
chr3:98849461|98881767 U2AF1 0 0 1
chr3:98849461|98881767 ADAR 1 0 1
chr3:98849461|98881767 U2AF2 8 4 2
chr3:98849461|98881767 SRSF9 2 0 2
chr3:98849461|98881767 DDX54 0 1 7
chr3:98849461|98881767 PCBP2 1 0 1
chr3:98849461|98881767 DICER1 0 1 0
chr3:98849461|98881767 PTBP1 0 0 1
chr3:98849461|98881767 HNRNPC 0 1 0
chr3:98849461|98881767 LARP7 0 0 1
chr3:98849461|98881767 SMNDC1 0 0 1
chr3:98849461|98881767 RANGAP1 2 0 2
chr3:98849461|98881767 LIN28B 0 1 2
chr3:98849461|98881767 FXR1 1 0 0
chr3:98849461|98881767 BCCIP 1 0 0
chr3:98849461|98881767 SND1 0 0 1
chr3:98849461|98881767 IGF2BP1 2 0 0
chr3:98849461|98881767 GTF2F1 1 0 0
chr3:98849461|98881767 IGF2BP3 0 0 1
chr3:98849461|98881767 IGF2BP2 0 5 7
chr3:98849461|98881767 TARDBP 0 2 0
chr3:98849461|98881767 BUD13 1 0 2
chr3:98849461|98881767 RBFOX2 1 1 1
chr3:98849461|98881767 RBM47 1 3 2
chr3:98849461|98881767 CSTF2T 0 0 2
chr3:98849461|98881767 TIA1 0 2 0
chr3:98849461|98881767 TARBP2 0 1 1
chr3:98849461|98881767 FBL 1 0 2
chr3:98849461|98881767 EIF4A3 0 1 2
chr3:98849461|98881767 AGO2 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab