CircRNA Information

General Information
circRNA Basic Information
CircID chr3:9963930|9964085
Strand +
CircType exon
Host Gene ENSG00000125037.11;
Algorism CIRI2;
Sequence AGACCTCTATTTTTTGAAGACCGAGCAGGGATTAGCTGTGTCAGGAACTTGGAGTTGCACTTAACCTTGTAACTTTGTTTGGAGCTGGCACCTCTTGAAATAAAAAGGAGGATGCACGAGCTGGCAGGCATGCAGCAAGGCTTGTTCTTGTCTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:9963930|9964085 hsa-miR-130a-5p 0 0 1
chr3:9963930|9964085 hsa-miR-130a-3p 0 0 1
chr3:9963930|9964085 hsa-miR-302a-5p 0 0 1
chr3:9963930|9964085 hsa-miR-302a-3p 0 0 1
chr3:9963930|9964085 hsa-miR-301a-5p 0 0 1
chr3:9963930|9964085 hsa-miR-301a-3p 0 0 1
chr3:9963930|9964085 hsa-miR-130b-5p 0 0 1
chr3:9963930|9964085 hsa-miR-130b-3p 0 0 1
chr3:9963930|9964085 hsa-miR-302b-5p 0 0 1
chr3:9963930|9964085 hsa-miR-302b-3p 0 0 1
chr3:9963930|9964085 hsa-miR-302c-5p 0 0 1
chr3:9963930|9964085 hsa-miR-302c-3p 0 0 1
chr3:9963930|9964085 hsa-miR-302d-5p 0 0 1
chr3:9963930|9964085 hsa-miR-302d-3p 0 0 1
chr3:9963930|9964085 hsa-miR-372-5p 0 0 1
chr3:9963930|9964085 hsa-miR-372-3p 0 0 1
chr3:9963930|9964085 hsa-miR-373-5p 0 0 1
chr3:9963930|9964085 hsa-miR-373-3p 0 0 1
chr3:9963930|9964085 hsa-miR-335-5p 0 0 1
chr3:9963930|9964085 hsa-miR-335-3p 0 0 1
chr3:9963930|9964085 hsa-miR-498-5p 0 0 1
chr3:9963930|9964085 hsa-miR-498-3p 0 0 1
chr3:9963930|9964085 hsa-miR-520e-5p 0 0 1
chr3:9963930|9964085 hsa-miR-520e-3p 0 0 1
chr3:9963930|9964085 hsa-miR-520b-5p 0 0 1
chr3:9963930|9964085 hsa-miR-520b-3p 0 0 1
chr3:9963930|9964085 hsa-miR-517-5p 0 0 1
chr3:9963930|9964085 hsa-miR-517a-3p 0 0 1
chr3:9963930|9964085 hsa-miR-517b-3p 0 0 1
chr3:9963930|9964085 hsa-miR-517c-3p 0 0 1
chr3:9963930|9964085 hsa-miR-624-5p 0 0 1
chr3:9963930|9964085 hsa-miR-624-3p 0 0 1
chr3:9963930|9964085 hsa-miR-454-5p 0 0 1
chr3:9963930|9964085 hsa-miR-454-3p 0 0 1
chr3:9963930|9964085 hsa-miR-891b 0 0 1
chr3:9963930|9964085 hsa-miR-301b-5p 0 0 1
chr3:9963930|9964085 hsa-miR-301b-3p 0 0 1
chr3:9963930|9964085 hsa-miR-1200 0 0 1
chr3:9963930|9964085 hsa-miR-1202 0 1 1
chr3:9963930|9964085 hsa-miR-302e 0 0 1
chr3:9963930|9964085 hsa-miR-423-3p 0 1 1
chr3:9963930|9964085 hsa-miR-324-5p 0 0 1
chr3:9963930|9964085 hsa-miR-520d-3p 0 0 1
chr3:9963930|9964085 hsa-miR-519b-3p 0 0 1
chr3:9963930|9964085 hsa-miR-519c-3p 0 0 1
chr3:9963930|9964085 hsa-miR-520a-3p 0 0 1
chr3:9963930|9964085 hsa-miR-520c-3p 0 0 1
chr3:9963930|9964085 hsa-miR-519a 0 0 1
chr3:9963930|9964085 hsa-miR-3972 0 1 0
chr3:9963930|9964085 hsa-miR-4673 0 1 0
chr3:9963930|9964085 hsa-miR-4633-5p 0 1 0
chr3:9963930|9964085 hsa-miR-4763-5p 0 1 0
chr3:9963930|9964085 hsa-miR-6894-3p 0 1 0
chr3:9963930|9964085 hsa-miR-378a-5p 0 1 0
chr3:9963930|9964085 hsa-miR-3085-5p 0 1 0
chr3:9963930|9964085 hsa-miR-4722-3p 0 1 0
chr3:9963930|9964085 hsa-miR-6727-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:9963930|9964085
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MELAPLEIKRRMHELAGMQQGLFLSG
Nucleotide Sequence TTGGAGCTGGCACCTCTTGAAATAAAAAGGAGGATGCACGAGCTGGCAGGCATGCAGCAAGGCTTGTTCTTGTCTGGG
CircID chr3:9963930|9964085
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MLHACQLVHPPFYFKRCQLQTKLQG
Nucleotide Sequence TTGCTGCATGCCTGCCAGCTCGTGCATCCTCCTTTTTATTTCAAGAGGTGCCAGCTCCAAACAAAGTTACAAGGTTAA
CircID chr3:9963930|9964085
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MPASSCILLFISRGASSKQSYKVKCNSKFLTQLIPARSSKNRG
Nucleotide Sequence ATGCCTGCCAGCTCGTGCATCCTCCTTTTTATTTCAAGAGGTGCCAGCTCCAAACAAAGTTACAAGGTTAAGTGCAACTCCAAGTTCCTGACACAGCTAATCCCTGCTCGGTCTTCAAAAAATAGAGGT
CircID chr3:9963930|9964085
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MPARASSFLFQEVPAPNKVTRLSATPSS
Nucleotide Sequence CTGCCAGCTCGTGCATCCTCCTTTTTATTTCAAGAGGTGCCAGCTCCAAACAAAGTTACAAGGTTAAGTGCAACTCCAAGTTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab