CircRNA Information

General Information
circRNA Basic Information
CircID chr4:1000941|1001043
Strand +
CircType exon
Host Gene ENSG00000127415.11;
Algorism CIRI2;
Sequence CTGCCCAGGAGTACCCCCGCCCCGGCCAGGGCCCCAGGGCCTGCGCTCGCCCACCGATGTATCTCCTGGCCAGGCTGGAGACCAAGTCCTTCCACTCAAACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:1000941|1001043 hsa-miR-612 0 0 1
chr4:1000941|1001043 hsa-miR-766-5p 0 0 1
chr4:1000941|1001043 hsa-miR-766-3p 0 0 1
chr4:1000941|1001043 hsa-miR-541-5p 0 0 1
chr4:1000941|1001043 hsa-miR-541-3p 0 0 1
chr4:1000941|1001043 hsa-miR-665 0 0 1
chr4:1000941|1001043 hsa-miR-1291 0 1 1
chr4:1000941|1001043 hsa-miR-654-5p 0 1 1
chr4:1000941|1001043 hsa-miR-1285 0 0 1
chr4:1000941|1001043 hsa-miR-663 0 0 1
chr4:1000941|1001043 hsa-miR-661 0 1 0
chr4:1000941|1001043 hsa-miR-658 1 0 0
chr4:1000941|1001043 hsa-miR-762 1 0 0
chr4:1000941|1001043 hsa-miR-2861 1 0 0
chr4:1000941|1001043 hsa-miR-4533 0 1 0
chr4:1000941|1001043 hsa-miR-4739 1 0 0
chr4:1000941|1001043 hsa-miR-4767 1 0 0
chr4:1000941|1001043 hsa-miR-5787 1 1 0
chr4:1000941|1001043 hsa-miR-6745 1 0 0
chr4:1000941|1001043 hsa-miR-12115 1 0 0
chr4:1000941|1001043 hsa-miR-6720-5p 0 1 0
chr4:1000941|1001043 hsa-miR-139-3p 1 0 0
chr4:1000941|1001043 hsa-miR-4768-3p 0 1 0
chr4:1000941|1001043 hsa-miR-4695-5p 1 0 0
chr4:1000941|1001043 hsa-miR-3180-3p 0 1 0
chr4:1000941|1001043 hsa-miR-6748-5p 1 0 0
chr4:1000941|1001043 hsa-miR-3190-3p 1 0 0
chr4:1000941|1001043 hsa-miR-6782-5p 1 0 0
chr4:1000941|1001043 hsa-miR-1343-3p 0 1 0
chr4:1000941|1001043 hsa-miR-6786-5p 1 0 0
chr4:1000941|1001043 hsa-miR-6852-5p 0 1 0
chr4:1000941|1001043 hsa-miR-1226-5p 1 0 0
chr4:1000941|1001043 hsa-miR-4640-5p 1 0 0
chr4:1000941|1001043 hsa-miR-1228-5p 1 1 0
chr4:1000941|1001043 hsa-miR-3677-3p 1 0 0
chr4:1000941|1001043 hsa-miR-3190-5p 0 1 0
chr4:1000941|1001043 hsa-miR-7160-3p 1 0 0
chr4:1000941|1001043 hsa-miR-1233-5p 1 0 0
chr4:1000941|1001043 hsa-miR-4763-3p 1 0 0
chr4:1000941|1001043 hsa-miR-6778-5p 1 0 0
chr4:1000941|1001043 hsa-miR-6787-5p 0 1 0
chr4:1000941|1001043 hsa-miR-6816-5p 1 1 0
chr4:1000941|1001043 hsa-miR-1343-5p 1 0 0
chr4:1000941|1001043 hsa-miR-6756-5p 1 0 0
chr4:1000941|1001043 hsa-miR-6819-5p 1 0 0
chr4:1000941|1001043 hsa-miR-7107-5p 0 1 0
chr4:1000941|1001043 hsa-miR-3620-5p 1 0 0
chr4:1000941|1001043 hsa-miR-6780b-5p 1 0 0
chr4:1000941|1001043 hsa-miR-4649-5p 1 1 0
chr4:1000941|1001043 hsa-miR-4745-5p 1 0 0
chr4:1000941|1001043 hsa-miR-6729-5p 1 1 0
chr4:1000941|1001043 hsa-miR-939-5p 0 1 0
chr4:1000941|1001043 hsa-miR-1238-5p 1 1 0
chr4:1000941|1001043 hsa-miR-4758-5p 1 1 0
chr4:1000941|1001043 hsa-miR-4747-5p 1 1 0
chr4:1000941|1001043 hsa-miR-6791-5p 1 1 0
chr4:1000941|1001043 hsa-miR-6775-3p 0 1 0
chr4:1000941|1001043 hsa-miR-664a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:1000941|1001043
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence LPRSTPAPARAPGPALAHRCISWPGWRPSPSTQT
Nucleotide Sequence CTGCCCAGGAGTACCCCCGCCCCGGCCAGGGCCCCAGGGCCTGCGCTCGCCCACCGATGTATCTCCTGGCCAGGCTGGAGACCAAGTCCTTCCACTCAAACA
CircID chr4:1000941|1001043
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MVSSLARRYIGGRAQALGPWPGRGYSWA
Nucleotide Sequence TTGGTCTCCAGCCTGGCCAGGAGATACATCGGTGGGCGAGCGCAGGCCCTGGGGCCCTGGCCGGGGCGGGGGTACTCCTGGGCA
CircID chr4:1000941|1001043
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MSGRTWSPAWPGDTSVGERRPWGPGRGGGTPGQ
Nucleotide Sequence TTGAGTGGAAGGACTTGGTCTCCAGCCTGGCCAGGAGATACATCGGTGGGCGAGCGCAGGCCCTGGGGCCCTGGCCGGGGCGGGGGTACTCCTGGGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab