CircRNA Information

General Information
circRNA Basic Information
CircID chr4:102525512|102537956
Strand +
CircType exon
Host Gene ENSG00000109320.11;
Algorism find_circ;CIRI2;DCC;
Sequence CTTCAGAATGGCAGAAGATGATCCATATTTGGGAAGGCCTGAACAAGCATCATTGGATTTAGGGTACACCCTTATCCAATATGACTTCATCTTAATTTGTTTATATCTGCGAAGACCCTATTTCCAAATAAAGTCACATTCACAGATGTTTCATTTGGATCCTTCTTTGACTCATACAATATTTAATCCAGAAGTATTTCAACCACAGATGGCACTGCCAACAGCAGATGGCCCATACCTTCAAATATTAGAGCAACCTAAACAGAGAGGATTTCGTTTCCGTTATGTATGTGAAGGCCCATCCCATGGTGGACTACCTGGTGCCTCTAGTGAAAAGAACAAGAAGTCTTACCCTCAGGTCAAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:102525512|102537956 hsa-miR-183-5p 0 0 1
chr4:102525512|102537956 hsa-miR-183-3p 0 0 1
chr4:102525512|102537956 hsa-miR-567 0 0 1
chr4:102525512|102537956 hsa-miR-579-5p 0 0 1
chr4:102525512|102537956 hsa-miR-579-3p 0 0 1
chr4:102525512|102537956 hsa-miR-607 0 0 1
chr4:102525512|102537956 hsa-miR-619-5p 0 0 1
chr4:102525512|102537956 hsa-miR-619-3p 0 0 1
chr4:102525512|102537956 hsa-miR-1264 0 0 1
chr4:102525512|102537956 hsa-miR-922 0 0 1
chr4:102525512|102537956 hsa-miR-297 0 0 1
chr4:102525512|102537956 hsa-miR-1237-5p 0 0 1
chr4:102525512|102537956 hsa-miR-1237-3p 0 0 1
chr4:102525512|102537956 hsa-miR-1305 0 0 1
chr4:102525512|102537956 hsa-miR-1248 0 0 1
chr4:102525512|102537956 hsa-miR-338-5p 0 0 1
chr4:102525512|102537956 hsa-miR-140-3p 0 0 1
chr4:102525512|102537956 hsa-miR-485-3p 0 0 1
chr4:102525512|102537956 hsa-miR-876-5p 0 0 1
chr4:102525512|102537956 hsa-miR-4493 0 1 0
chr4:102525512|102537956 hsa-miR-4739 1 0 0
chr4:102525512|102537956 hsa-miR-6126 0 1 0
chr4:102525512|102537956 hsa-miR-8056 0 1 0
chr4:102525512|102537956 hsa-miR-433-3p 1 0 0
chr4:102525512|102537956 hsa-miR-6868-3p 0 1 0
chr4:102525512|102537956 hsa-miR-7848-3p 0 1 0
chr4:102525512|102537956 hsa-miR-4714-3p 0 1 0
chr4:102525512|102537956 hsa-miR-3085-5p 1 0 0
chr4:102525512|102537956 hsa-miR-550a-3p 0 1 0
chr4:102525512|102537956 hsa-miR-200c-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:102525512|102537956
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MKVWAICCWQCHLWLKYFWIKYCMSQRRIQMKHLK
Nucleotide Sequence TTGAAGGTATGGGCCATCTGCTGTTGGCAGTGCCATCTGTGGTTGAAATACTTCTGGATTAAATATTGTATGAGTCAAAGAAGGATCCAAATGAAACATCTGAAG
CircID chr4:102525512|102537956
ORF Type ORF2
Protein Length 73
Nucleotide Length 219
Protein Sequence MFHLDPSLTHTIFNPEVFQPQMALPTADGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVK
Nucleotide Sequence ATGTTTCATTTGGATCCTTCTTTGACTCATACAATATTTAATCCAGAAGTATTTCAACCACAGATGGCACTGCCAACAGCAGATGGCCCATACCTTCAAATATTAGAGCAACCTAAACAGAGAGGATTTCGTTTCCGTTATGTATGTGAAGGCCCATCCCATGGTGGACTACCTGGTGCCTCTAGTGAAAAGAACAAGAAGTCTTACCCTCAGGTCAAA
CircID chr4:102525512|102537956
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MYVKAHPMVDYLVPLVKRTRSLTLRS
Nucleotide Sequence ATGTATGTGAAGGCCCATCCCATGGTGGACTACCTGGTGCCTCTAGTGAAAAGAACAAGAAGTCTTACCCTCAGGTCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr4:102525512|102537956 NOP56 0 1 0
chr4:102525512|102537956 FUS 0 1 0
chr4:102525512|102537956 ELAVL3 1 0 0
chr4:102525512|102537956 TBRG4 1 0 0
chr4:102525512|102537956 CNBP 1 0 0
chr4:102525512|102537956 TAF15 1 0 0
chr4:102525512|102537956 FMR1 0 0 3
chr4:102525512|102537956 NUDT21 0 0 1
chr4:102525512|102537956 SRSF7 1 0 0
chr4:102525512|102537956 SRSF1 0 0 1
chr4:102525512|102537956 NOP58 0 0 3
chr4:102525512|102537956 U2AF2 2 1 1
chr4:102525512|102537956 SRSF9 1 0 0
chr4:102525512|102537956 DDX54 0 0 4
chr4:102525512|102537956 PTBP1 1 0 0
chr4:102525512|102537956 HNRNPF 1 0 0
chr4:102525512|102537956 DDX3X 0 0 1
chr4:102525512|102537956 RANGAP1 1 0 0
chr4:102525512|102537956 FXR2 2 0 0
chr4:102525512|102537956 IGF2BP1 0 0 4
chr4:102525512|102537956 IGF2BP2 0 0 2
chr4:102525512|102537956 BUD13 1 0 0
chr4:102525512|102537956 PRPF8 0 4 0
chr4:102525512|102537956 CSTF2T 0 0 1
chr4:102525512|102537956 RBM22 0 1 0
chr4:102525512|102537956 TIAL1 0 1 0
chr4:102525512|102537956 EIF4A3 3 1 2
chr4:102525512|102537956 AGO2 0 1 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab