CircRNA Information

General Information
circRNA Basic Information
CircID chr4:105970406|105970528
Strand +
CircType exon
Host Gene ENSG00000168743.11;
Algorism CIRI2;
Sequence CCTCTCTGTGCCAACCCTTCATATACTTGAAAACCATCAATGGTTTGCCCCTCAGTCTTCTCTTCTCCAGGCTCAATAATCCCAGTTCCTTTAATTTTCCATCATAGATCTTTTTTTCCAACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:105970406|105970528 hsa-miR-26b-5p 0 0 1
chr4:105970406|105970528 hsa-miR-26b-3p 0 0 1
chr4:105970406|105970528 hsa-miR-96-5p 0 0 1
chr4:105970406|105970528 hsa-miR-96-3p 0 0 1
chr4:105970406|105970528 hsa-miR-498-5p 0 0 1
chr4:105970406|105970528 hsa-miR-498-3p 0 0 1
chr4:105970406|105970528 hsa-miR-1271-5p 0 0 1
chr4:105970406|105970528 hsa-miR-1271-3p 0 0 1
chr4:105970406|105970528 hsa-miR-1297 0 0 1
chr4:105970406|105970528 hsa-miR-1305 0 0 1
chr4:105970406|105970528 hsa-miR-1253 0 0 1
chr4:105970406|105970528 hsa-miR-1272 0 0 1
chr4:105970406|105970528 hsa-miR-1322 0 0 1
chr4:105970406|105970528 hsa-miR-296-3p 0 1 1
chr4:105970406|105970528 hsa-miR-423-5p 0 1 1
chr4:105970406|105970528 hsa-miR-26a 0 0 1
chr4:105970406|105970528 hsa-miR-1254 0 0 1
chr4:105970406|105970528 hsa-miR-1259 0 0 1
chr4:105970406|105970528 hsa-miR-601 1 0 0
chr4:105970406|105970528 hsa-miR-765 1 0 0
chr4:105970406|105970528 hsa-miR-1268a 1 0 0
chr4:105970406|105970528 hsa-miR-1270 1 0 0
chr4:105970406|105970528 hsa-miR-2861 1 0 0
chr4:105970406|105970528 hsa-miR-3131 1 0 0
chr4:105970406|105970528 hsa-miR-3132 1 0 0
chr4:105970406|105970528 hsa-miR-3154 1 1 0
chr4:105970406|105970528 hsa-miR-4271 1 0 0
chr4:105970406|105970528 hsa-miR-3652 1 0 0
chr4:105970406|105970528 hsa-miR-1268b 1 0 0
chr4:105970406|105970528 hsa-miR-4430 1 0 0
chr4:105970406|105970528 hsa-miR-4463 1 0 0
chr4:105970406|105970528 hsa-miR-4487 1 0 0
chr4:105970406|105970528 hsa-miR-4499 0 1 0
chr4:105970406|105970528 hsa-miR-4516 1 0 0
chr4:105970406|105970528 hsa-miR-4534 1 0 0
chr4:105970406|105970528 hsa-miR-4538 1 0 0
chr4:105970406|105970528 hsa-miR-4658 1 0 0
chr4:105970406|105970528 hsa-miR-4689 1 0 0
chr4:105970406|105970528 hsa-miR-6086 1 0 0
chr4:105970406|105970528 hsa-miR-6124 1 0 0
chr4:105970406|105970528 hsa-miR-6745 1 0 0
chr4:105970406|105970528 hsa-miR-8052 1 0 0
chr4:105970406|105970528 hsa-miR-8082 1 0 0
chr4:105970406|105970528 hsa-miR-8089 1 1 0
chr4:105970406|105970528 hsa-miR-12119 1 0 0
chr4:105970406|105970528 hsa-miR-12120 1 1 0
chr4:105970406|105970528 hsa-miR-135a-3p 1 0 0
chr4:105970406|105970528 hsa-miR-134-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6734-5p 1 1 0
chr4:105970406|105970528 hsa-miR-7155-5p 1 0 0
chr4:105970406|105970528 hsa-miR-7106-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6857-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6728-5p 1 0 0
chr4:105970406|105970528 hsa-miR-7851-3p 1 0 0
chr4:105970406|105970528 hsa-miR-6807-5p 1 0 0
chr4:105970406|105970528 hsa-miR-3192-5p 1 0 0
chr4:105970406|105970528 hsa-miR-7847-3p 1 0 0
chr4:105970406|105970528 hsa-miR-6746-5p 1 0 0
chr4:105970406|105970528 hsa-miR-197-5p 1 0 0
chr4:105970406|105970528 hsa-miR-8069 1 0 0
chr4:105970406|105970528 hsa-miR-432-5p 1 0 0
chr4:105970406|105970528 hsa-miR-7845-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6716-5p 1 0 0
chr4:105970406|105970528 hsa-miR-3156-5p 1 1 0
chr4:105970406|105970528 hsa-miR-6852-5p 1 0 0
chr4:105970406|105970528 hsa-miR-1226-5p 1 0 0
chr4:105970406|105970528 hsa-miR-4738-3p 1 0 0
chr4:105970406|105970528 hsa-miR-4640-5p 1 0 0
chr4:105970406|105970528 hsa-miR-877-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6749-5p 1 0 0
chr4:105970406|105970528 hsa-miR-937-5p 1 0 0
chr4:105970406|105970528 hsa-miR-550b-2-5p 1 0 0
chr4:105970406|105970528 hsa-miR-516b-5p 1 1 0
chr4:105970406|105970528 hsa-miR-2114-3p 1 0 0
chr4:105970406|105970528 hsa-miR-5089-5p 0 1 0
chr4:105970406|105970528 hsa-miR-5197-3p 0 1 0
chr4:105970406|105970528 hsa-miR-6812-5p 1 0 0
chr4:105970406|105970528 hsa-miR-5001-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6743-5p 1 1 0
chr4:105970406|105970528 hsa-miR-6851-5p 1 0 0
chr4:105970406|105970528 hsa-miR-7107-5p 1 0 0
chr4:105970406|105970528 hsa-miR-11181-3p 1 0 0
chr4:105970406|105970528 hsa-miR-6788-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6780b-5p 1 0 0
chr4:105970406|105970528 hsa-miR-328-5p 1 0 0
chr4:105970406|105970528 hsa-miR-4725-3p 1 0 0
chr4:105970406|105970528 hsa-miR-6738-5p 1 0 0
chr4:105970406|105970528 hsa-miR-3199 1 0 0
chr4:105970406|105970528 hsa-miR-6856-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6855-5p 1 0 0
chr4:105970406|105970528 hsa-miR-3116 1 1 0
chr4:105970406|105970528 hsa-miR-4700-5p 1 1 0
chr4:105970406|105970528 hsa-miR-10398-3p 1 0 0
chr4:105970406|105970528 hsa-miR-4646-5p 1 1 0
chr4:105970406|105970528 hsa-miR-6891-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6750-5p 1 0 0
chr4:105970406|105970528 hsa-miR-4667-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6790-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6724-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6791-5p 1 0 0
chr4:105970406|105970528 hsa-miR-6859-5p 1 0 0
chr4:105970406|105970528 hsa-miR-619-5p 1 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:105970406|105970528
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MVCPSVFSSPGSIIPVPLIFHHRSFFPT
Nucleotide Sequence ATGGTTTGCCCCTCAGTCTTCTCTTCTCCAGGCTCAATAATCCCAGTTCCTTTAATTTTCCATCATAGATCTTTTTTTCCAACC
CircID chr4:105970406|105970528
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MCQPFIYLKTINGLPLSLLFSRLNNPSSFNFPS
Nucleotide Sequence CTGTGCCAACCCTTCATATACTTGAAAACCATCAATGGTTTGCCCCTCAGTCTTCTCTTCTCCAGGCTCAATAATCCCAGTTCCTTTAATTTTCCATCATAG
CircID chr4:105970406|105970528
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence LEKKIYDGKLKELGLLSLEKRRLRGKPLMVFKYMKGWHRE
Nucleotide Sequence TTGGAAAAAAAGATCTATGATGGAAAATTAAAGGAACTGGGATTATTGAGCCTGGAGAAGAGAAGACTGAGGGGCAAACCATTGATGGTTTTCAAGTATATGAAGGGTTGGCACAGAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab