CircRNA Information

General Information
circRNA Basic Information
CircID chr4:107989855|107990064
Strand +
CircType exon
Host Gene ENSG00000138796.14;
Algorism CIRI2;
Sequence CTGGGCAATGCCGGCGCCCATCAGCCCGCCGCCGATGACCGTCACGTGCTTGACGATTATCTTCTTGGCCGAGGCCGAGGCGGTGGACGAGGAGGACACGGAACGCATGAACTGCCTGGTGACGAAGGCCATGGTGTGGCAGCGGCGGCGACAGCGAGGAGACCCGGGCAGGGAAGACGCGCGAGGCGGGCAGCCGCGGAAAGCCAGACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:107989855|107990064 hsa-miR-149-5p 0 0 1
chr4:107989855|107990064 hsa-miR-149-3p 0 0 1
chr4:107989855|107990064 hsa-miR-937-5p 0 0 1
chr4:107989855|107990064 hsa-miR-937-3p 0 0 1
chr4:107989855|107990064 hsa-miR-1226-5p 0 0 1
chr4:107989855|107990064 hsa-miR-1226-3p 0 0 1
chr4:107989855|107990064 hsa-miR-1234-3p 0 0 1
chr4:107989855|107990064 hsa-miR-1206 0 0 1
chr4:107989855|107990064 hsa-miR-1256 0 0 1
chr4:107989855|107990064 hsa-miR-1234 0 0 1
chr4:107989855|107990064 hsa-miR-1274a 0 0 1
chr4:107989855|107990064 hsa-miR-720 0 0 1
chr4:107989855|107990064 hsa-miR-346 1 0 0
chr4:107989855|107990064 hsa-miR-596 1 0 0
chr4:107989855|107990064 hsa-miR-661 1 1 0
chr4:107989855|107990064 hsa-miR-762 1 0 0
chr4:107989855|107990064 hsa-miR-1181 1 0 0
chr4:107989855|107990064 hsa-miR-1538 1 1 0
chr4:107989855|107990064 hsa-miR-1913 1 0 0
chr4:107989855|107990064 hsa-miR-1976 1 0 0
chr4:107989855|107990064 hsa-miR-718 1 0 0
chr4:107989855|107990064 hsa-miR-4290 1 0 0
chr4:107989855|107990064 hsa-miR-4467 0 1 0
chr4:107989855|107990064 hsa-miR-3960 0 1 0
chr4:107989855|107990064 hsa-miR-4656 1 1 0
chr4:107989855|107990064 hsa-miR-4692 0 1 0
chr4:107989855|107990064 hsa-miR-5193 0 1 0
chr4:107989855|107990064 hsa-miR-8072 0 1 0
chr4:107989855|107990064 hsa-miR-8075 0 1 0
chr4:107989855|107990064 hsa-miR-9899 0 1 0
chr4:107989855|107990064 hsa-miR-9901 1 0 0
chr4:107989855|107990064 hsa-miR-132-5p 0 1 0
chr4:107989855|107990064 hsa-miR-6720-5p 1 0 0
chr4:107989855|107990064 hsa-miR-6875-3p 0 1 0
chr4:107989855|107990064 hsa-miR-6762-3p 1 0 0
chr4:107989855|107990064 hsa-miR-1915-5p 1 0 0
chr4:107989855|107990064 hsa-miR-6845-3p 0 1 0
chr4:107989855|107990064 hsa-miR-6774-3p 1 1 0
chr4:107989855|107990064 hsa-miR-6882-3p 1 0 0
chr4:107989855|107990064 hsa-miR-4763-5p 1 0 0
chr4:107989855|107990064 hsa-miR-7108-3p 1 0 0
chr4:107989855|107990064 hsa-miR-1247-5p 1 0 0
chr4:107989855|107990064 hsa-miR-4707-3p 1 0 0
chr4:107989855|107990064 hsa-miR-7113-3p 1 1 0
chr4:107989855|107990064 hsa-miR-3677-3p 1 0 0
chr4:107989855|107990064 hsa-miR-4446-5p 1 0 0
chr4:107989855|107990064 hsa-miR-593-3p 1 0 0
chr4:107989855|107990064 hsa-miR-1911-3p 0 1 0
chr4:107989855|107990064 hsa-miR-1238-3p 0 1 0
chr4:107989855|107990064 hsa-miR-6752-3p 0 1 0
chr4:107989855|107990064 hsa-miR-6886-3p 1 0 0
chr4:107989855|107990064 hsa-miR-6748-3p 0 1 0
chr4:107989855|107990064 hsa-miR-3173-5p 1 0 0
chr4:107989855|107990064 hsa-miR-10400-5p 1 1 0
chr4:107989855|107990064 hsa-miR-320a-5p 1 1 0
chr4:107989855|107990064 hsa-miR-34b-5p 0 1 0
chr4:107989855|107990064 hsa-miR-6893-3p 1 0 0
chr4:107989855|107990064 hsa-miR-10401-3p 1 0 0
chr4:107989855|107990064 hsa-miR-6801-3p 1 0 0
chr4:107989855|107990064 hsa-miR-323b-5p 1 0 0
chr4:107989855|107990064 hsa-miR-3064-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:107989855|107990064
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence LGNAGAHQPAADDRHVLDDYLLGRGRGGGRGGHGTHELPGDEGHGVAAAATARRPGQGRRARRAAAESQT
Nucleotide Sequence CTGGGCAATGCCGGCGCCCATCAGCCCGCCGCCGATGACCGTCACGTGCTTGACGATTATCTTCTTGGCCGAGGCCGAGGCGGTGGACGAGGAGGACACGGAACGCATGAACTGCCTGGTGACGAAGGCCATGGTGTGGCAGCGGCGGCGACAGCGAGGAGACCCGGGCAGGGAAGACGCGCGAGGCGGGCAGCCGCGGAAAGCCAGACT
CircID chr4:107989855|107990064
ORF Type ORF2
Protein Length 67
Nucleotide Length 201
Protein Sequence MPAPISPPPMTVTCLTIIFLAEAEAVDEEDTERMNCLVTKAMVWQRRRQRGDPGREDARGGQPRKAR
Nucleotide Sequence ATGCCGGCGCCCATCAGCCCGCCGCCGATGACCGTCACGTGCTTGACGATTATCTTCTTGGCCGAGGCCGAGGCGGTGGACGAGGAGGACACGGAACGCATGAACTGCCTGGTGACGAAGGCCATGGTGTGGCAGCGGCGGCGACAGCGAGGAGACCCGGGCAGGGAAGACGCGCGAGGCGGGCAGCCGCGGAAAGCCAGA
CircID chr4:107989855|107990064
ORF Type ORF3
Protein Length 69
Nucleotide Length 207
Protein Sequence MAFRGCPPRASSLPGSPRCRRRCHTMAFVTRQFMRSVSSSSTASASAKKIIVKHVTVIGGGLMGAGIAQ
Nucleotide Sequence CTGGCTTTCCGCGGCTGCCCGCCTCGCGCGTCTTCCCTGCCCGGGTCTCCTCGCTGTCGCCGCCGCTGCCACACCATGGCCTTCGTCACCAGGCAGTTCATGCGTTCCGTGTCCTCCTCGTCCACCGCCTCGGCCTCGGCCAAGAAGATAATCGTCAAGCACGTGACGGTCATCGGCGGCGGGCTGATGGGCGCCGGCATTGCCCAG
CircID chr4:107989855|107990064
ORF Type ORF4
Protein Length 64
Nucleotide Length 192
Protein Sequence MPASRVFPARVSSLSPPLPHHGLRHQAVHAFRVLLVHRLGLGQEDNRQARDGHRRRADGRRHCP
Nucleotide Sequence CTGCCCGCCTCGCGCGTCTTCCCTGCCCGGGTCTCCTCGCTGTCGCCGCCGCTGCCACACCATGGCCTTCGTCACCAGGCAGTTCATGCGTTCCGTGTCCTCCTCGTCCACCGCCTCGGCCTCGGCCAAGAAGATAATCGTCAAGCACGTGACGGTCATCGGCGGCGGGCTGATGGGCGCCGGCATTGCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab