CircRNA Information

General Information
circRNA Basic Information
CircID chr4:113373431|113374946
Strand +
CircType exon
Host Gene ENSG00000145362.15;
Algorism CIRI2;
Sequence CTCTTCAAAGTCATCTTTGGCTGAAGGAAGATCAGTGGCTAAACTAGAATCCCCCAGATGTTTCTCCATCCTCTCTCCAAGTACCACAGTTGTTTTAACAACTTTGCTGACTCTACGGCCTTCCACTGGCTCAGCCTGAAATTGTGAGGTACTGGACAAAATGCTGGGCTCACACAAAGTGACCTCTGACTGCTCGGTGTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:113373431|113374946 hsa-miR-198 0 0 1
chr4:113373431|113374946 hsa-miR-205-5p 0 0 1
chr4:113373431|113374946 hsa-miR-205-3p 0 0 1
chr4:113373431|113374946 hsa-miR-185-5p 0 0 1
chr4:113373431|113374946 hsa-miR-185-3p 0 0 1
chr4:113373431|113374946 hsa-miR-382-5p 0 0 1
chr4:113373431|113374946 hsa-miR-382-3p 0 0 1
chr4:113373431|113374946 hsa-miR-484 0 0 1
chr4:113373431|113374946 hsa-miR-432-5p 0 0 1
chr4:113373431|113374946 hsa-miR-432-3p 0 0 1
chr4:113373431|113374946 hsa-miR-494-5p 0 0 1
chr4:113373431|113374946 hsa-miR-494-3p 0 0 1
chr4:113373431|113374946 hsa-miR-545-5p 0 0 1
chr4:113373431|113374946 hsa-miR-545-3p 0 0 1
chr4:113373431|113374946 hsa-miR-575 0 1 1
chr4:113373431|113374946 hsa-miR-599 0 0 1
chr4:113373431|113374946 hsa-miR-620 0 0 1
chr4:113373431|113374946 hsa-miR-625-5p 0 0 1
chr4:113373431|113374946 hsa-miR-625-3p 0 0 1
chr4:113373431|113374946 hsa-miR-637 0 1 1
chr4:113373431|113374946 hsa-miR-890 0 0 1
chr4:113373431|113374946 hsa-miR-1270 0 0 1
chr4:113373431|113374946 hsa-miR-1275 0 0 1
chr4:113373431|113374946 hsa-miR-1225-3p 0 0 1
chr4:113373431|113374946 hsa-miR-770-5p 0 1 1
chr4:113373431|113374946 hsa-miR-338-3p 0 0 1
chr4:113373431|113374946 hsa-miR-1233 0 0 1
chr4:113373431|113374946 hsa-miR-768-3p 0 0 1
chr4:113373431|113374946 hsa-miR-147 0 0 1
chr4:113373431|113374946 hsa-miR-658 1 0 0
chr4:113373431|113374946 hsa-miR-2110 1 0 0
chr4:113373431|113374946 hsa-miR-2278 1 0 0
chr4:113373431|113374946 hsa-miR-3929 0 1 0
chr4:113373431|113374946 hsa-miR-4478 0 1 0
chr4:113373431|113374946 hsa-miR-4516 1 0 0
chr4:113373431|113374946 hsa-miR-4525 1 0 0
chr4:113373431|113374946 hsa-miR-4644 1 1 0
chr4:113373431|113374946 hsa-miR-4656 1 0 0
chr4:113373431|113374946 hsa-miR-4663 0 1 0
chr4:113373431|113374946 hsa-miR-4689 1 0 0
chr4:113373431|113374946 hsa-miR-4739 1 0 0
chr4:113373431|113374946 hsa-miR-5739 1 1 0
chr4:113373431|113374946 hsa-miR-5787 1 0 0
chr4:113373431|113374946 hsa-miR-6085 1 0 0
chr4:113373431|113374946 hsa-miR-6125 1 0 0
chr4:113373431|113374946 hsa-miR-6133 1 0 0
chr4:113373431|113374946 hsa-miR-6745 1 1 0
chr4:113373431|113374946 hsa-miR-8085 1 0 0
chr4:113373431|113374946 hsa-miR-12115 1 0 0
chr4:113373431|113374946 hsa-miR-12118 1 0 0
chr4:113373431|113374946 hsa-miR-7106-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6894-5p 1 1 0
chr4:113373431|113374946 hsa-miR-6857-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6728-5p 1 0 0
chr4:113373431|113374946 hsa-miR-766-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6515-5p 1 1 0
chr4:113373431|113374946 hsa-miR-6807-5p 1 1 0
chr4:113373431|113374946 hsa-miR-3192-5p 1 0 0
chr4:113373431|113374946 hsa-miR-7847-3p 1 0 0
chr4:113373431|113374946 hsa-miR-769-5p 1 0 0
chr4:113373431|113374946 hsa-miR-197-5p 1 0 0
chr4:113373431|113374946 hsa-miR-3605-5p 1 1 0
chr4:113373431|113374946 hsa-miR-6748-5p 1 0 0
chr4:113373431|113374946 hsa-miR-3190-3p 1 1 0
chr4:113373431|113374946 hsa-miR-4640-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6847-5p 1 0 0
chr4:113373431|113374946 hsa-miR-937-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6818-5p 0 1 0
chr4:113373431|113374946 hsa-miR-7849-3p 0 1 0
chr4:113373431|113374946 hsa-miR-1233-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6778-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6812-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6870-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6754-5p 1 0 0
chr4:113373431|113374946 hsa-miR-1249-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6722-3p 1 0 0
chr4:113373431|113374946 hsa-miR-6763-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6780a-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6797-5p 1 0 0
chr4:113373431|113374946 hsa-miR-7111-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6780b-5p 1 0 0
chr4:113373431|113374946 hsa-miR-4725-3p 1 0 0
chr4:113373431|113374946 hsa-miR-4726-5p 1 1 0
chr4:113373431|113374946 hsa-miR-4723-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6758-5p 1 1 0
chr4:113373431|113374946 hsa-miR-6856-5p 0 1 0
chr4:113373431|113374946 hsa-miR-3679-5p 1 0 0
chr4:113373431|113374946 hsa-miR-4667-5p 1 0 0
chr4:113373431|113374946 hsa-miR-6724-5p 1 0 0
chr4:113373431|113374946 hsa-miR-4676-5p 0 1 0
chr4:113373431|113374946 hsa-miR-548b-5p 0 1 0
chr4:113373431|113374946 hsa-miR-548d-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:113373431|113374946
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MFLHPLSKYHSCFNNFADSTAFHWLSLKL
Nucleotide Sequence ATGTTTCTCCATCCTCTCTCCAAGTACCACAGTTGTTTTAACAACTTTGCTGACTCTACGGCCTTCCACTGGCTCAGCCTGAAATTGTGA
CircID chr4:113373431|113374946
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MAEGRSVAKLESPRCFSILSPSTTVVLTTLLTLRPSTGSA
Nucleotide Sequence TTGGCTGAAGGAAGATCAGTGGCTAAACTAGAATCCCCCAGATGTTTCTCCATCCTCTCTCCAAGTACCACAGTTGTTTTAACAACTTTGCTGACTCTACGGCCTTCCACTGGCTCAGCCTGA
CircID chr4:113373431|113374946
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MCEPSILSSTSQFQAEPVEGRRVSKVVKTTVVLGERMEKHLGDSSLATDLPSAKDDFEE
Nucleotide Sequence TTGTGTGAGCCCAGCATTTTGTCCAGTACCTCACAATTTCAGGCTGAGCCAGTGGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACTGTGGTACTTGGAGAGAGGATGGAGAAACATCTGGGGGATTCTAGTTTAGCCACTGATCTTCCTTCAGCCAAAGATGACTTTGAAGAG
CircID chr4:113373431|113374946
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MSQWKAVESAKLLKQLWYLERGWRNIWGILV
Nucleotide Sequence CTGAGCCAGTGGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACTGTGGTACTTGGAGAGAGGATGGAGAAACATCTGGGGGATTCTAGTTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab