CircRNA Information

General Information
circRNA Basic Information
CircID chr4:121034505|121034709
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TGCCTTTCATATGGTGGGCATTCAACAGCAACATTCCTGTGGAGTATAGATGGCTATGACTAAGGTAGTGTAAGTGGTGGTCCTTATAAAATATGCTCTGCTTGCCTTAGGGGAAAATAGTTCCTTAAAAACGTTCTCATCCAACTCCTCAGTGTTAAGATATCTAAACAAAAGTGACCACATCTATACACAACAGTAATGACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:121034505|121034709 hsa-miR-141-5p 0 0 1
chr4:121034505|121034709 hsa-miR-141-3p 0 0 1
chr4:121034505|121034709 hsa-miR-146a-5p 0 0 1
chr4:121034505|121034709 hsa-miR-146a-3p 0 0 1
chr4:121034505|121034709 hsa-miR-206 0 0 1
chr4:121034505|121034709 hsa-miR-200a-5p 0 0 1
chr4:121034505|121034709 hsa-miR-200a-3p 0 0 1
chr4:121034505|121034709 hsa-miR-452-5p 0 0 1
chr4:121034505|121034709 hsa-miR-452-3p 0 0 1
chr4:121034505|121034709 hsa-miR-488-5p 0 0 1
chr4:121034505|121034709 hsa-miR-488-3p 0 0 1
chr4:121034505|121034709 hsa-miR-506-5p 0 0 1
chr4:121034505|121034709 hsa-miR-506-3p 0 0 1
chr4:121034505|121034709 hsa-miR-571 0 0 1
chr4:121034505|121034709 hsa-miR-589-5p 0 0 1
chr4:121034505|121034709 hsa-miR-589-3p 0 0 1
chr4:121034505|121034709 hsa-miR-613 0 0 1
chr4:121034505|121034709 hsa-miR-616-5p 0 0 1
chr4:121034505|121034709 hsa-miR-616-3p 0 0 1
chr4:121034505|121034709 hsa-miR-653-5p 0 0 1
chr4:121034505|121034709 hsa-miR-653-3p 0 0 1
chr4:121034505|121034709 hsa-miR-1255a 0 0 1
chr4:121034505|121034709 hsa-miR-1267 0 0 1
chr4:121034505|121034709 hsa-miR-1284 0 0 1
chr4:121034505|121034709 hsa-miR-508-5p 0 0 1
chr4:121034505|121034709 hsa-miR-576-3p 0 0 1
chr4:121034505|121034709 hsa-miR-409-3p 0 1 1
chr4:121034505|121034709 hsa-miR-146b-5p 0 0 1
chr4:121034505|121034709 hsa-miR-1255b 0 0 1
chr4:121034505|121034709 hsa-miR-124 0 0 1
chr4:121034505|121034709 hsa-miR-1 0 0 1
chr4:121034505|121034709 hsa-miR-365 0 0 1
chr4:121034505|121034709 hsa-miR-1265 1 0 0
chr4:121034505|121034709 hsa-miR-4462 1 0 0
chr4:121034505|121034709 hsa-miR-4651 1 0 0
chr4:121034505|121034709 hsa-miR-4689 1 0 0
chr4:121034505|121034709 hsa-miR-4784 1 0 0
chr4:121034505|121034709 hsa-miR-5194 1 0 0
chr4:121034505|121034709 hsa-miR-6132 1 0 0
chr4:121034505|121034709 hsa-miR-8089 1 0 0
chr4:121034505|121034709 hsa-miR-4433b-3p 1 0 0
chr4:121034505|121034709 hsa-miR-6734-5p 1 0 0
chr4:121034505|121034709 hsa-miR-3934-5p 1 0 0
chr4:121034505|121034709 hsa-miR-7114-5p 1 0 0
chr4:121034505|121034709 hsa-miR-1292-5p 1 0 0
chr4:121034505|121034709 hsa-miR-6796-5p 1 0 0
chr4:121034505|121034709 hsa-miR-296-3p 1 0 0
chr4:121034505|121034709 hsa-miR-3162-5p 1 0 0
chr4:121034505|121034709 hsa-miR-103b 0 1 0
chr4:121034505|121034709 hsa-miR-5195-5p 0 1 0
chr4:121034505|121034709 hsa-miR-6812-5p 1 0 0
chr4:121034505|121034709 hsa-miR-6763-5p 1 0 0
chr4:121034505|121034709 hsa-miR-6808-5p 1 0 0
chr4:121034505|121034709 hsa-miR-6738-5p 1 0 0
chr4:121034505|121034709 hsa-miR-6858-5p 1 1 0
chr4:121034505|121034709 hsa-miR-6889-5p 1 0 0
chr4:121034505|121034709 hsa-miR-939-5p 1 0 0
chr4:121034505|121034709 hsa-miR-6736-5p 1 0 0
chr4:121034505|121034709 hsa-miR-4700-5p 1 0 0
chr4:121034505|121034709 hsa-miR-4667-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:121034505|121034709
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MLALGENSSLKTFSSNSSVLRYLNKSDHIYTQQ
Nucleotide Sequence CTGCTTGCCTTAGGGGAAAATAGTTCCTTAAAAACGTTCTCATCCAACTCCTCAGTGTTAAGATATCTAAACAAAAGTGACCACATCTATACACAACAGTAA
CircID chr4:121034505|121034709
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MWSLLFRYLNTEELDENVFKELFSPKASRAYFIRTTTYTTLVIAIYTPQECCC
Nucleotide Sequence ATGTGGTCACTTTTGTTTAGATATCTTAACACTGAGGAGTTGGATGAGAACGTTTTTAAGGAACTATTTTCCCCTAAGGCAAGCAGAGCATATTTTATAAGGACCACCACTTACACTACCTTAGTCATAGCCATCTATACTCCACAGGAATGTTGCTGTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab