CircRNA Information

General Information
circRNA Basic Information
CircID chr4:121833231|121855561
Strand -
CircType exon
Host Gene ENSG00000138686.9;
Algorism find_circ;CIRI2;DCC;
Sequence GGATCTGATGTGATGTATGCAGTTGAAGTTCCTGGACCCCCTACTGTCTTAGCACTACACAATGGAAATGGCGGTAATCAGGATTTTATTTTTCACAAATCAACTATGTGTTTTAATATAGGTGACTCTGGAGAAGACCTTTTGTTTGGGACATCAGACGGAAAACTTGCGCTTATACAGATTACTACATCCAAACCAGTACGCAAGTGGGAAATTCAAAATGAGAAAAAGAGAGGAGGTATTTTGTGTATTGACAGCTTTGACATTGTGGGTGATGGGGTTAAAGATTTACTTGTTGGGAGAGATGACGGAATGGTGGAAGTGTATAGTTTTGATAATGCAAATGAACCTGTTCTACGATTTGATCAGATGTTGTCTGAAAGCGTCACATCTATCCAGGGTGGTTGTGTAGGAAAAGACAGCTATGATGAAATCGTGGTGTCCACATATTCAGTCAAACGACAACTTCCTTCTTGCCACTTATCGGTGCCAGGCAGATACTACAAGGCTGGAACTCAAGATTCGCTCAATTGAAGGCCAGTATGGCACACTACAAGCATATGTGACTCCAAGAATTCAACCCAAAACCTGTCAGGTCCGCCAGTACCACATCAAACCTCTTTCACTCCATCAAAGAACTCACTTTATTGATCATGACAGACCCATGAATACACTGACCCTAACAGGCCAGTTCAGTTTTGCTGAAGTTCACTCCTGGGTGGTTTTTTGTCTGCCTGAAGTTCCAGAAAAACCTCCAGCAGGAGAATGTGTGACATTTTACTTTCAGAACACCTTTCTAGATACACAACTTGAAAGTACCTACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:121833231|121855561 hsa-miR-3147 1 1 1
chr4:121833231|121855561 hsa-miR-4502 1 1 1
chr4:121833231|121855561 hsa-miR-5093 1 1 1
chr4:121833231|121855561 hsa-miR-5192 1 1 1
chr4:121833231|121855561 hsa-miR-6124 1 1 1
chr4:121833231|121855561 hsa-miR-1972 1 1 1
chr4:121833231|121855561 hsa-miR-8071 1 1 1
chr4:121833231|121855561 hsa-miR-6880-5p 1 1 1
chr4:121833231|121855561 hsa-miR-4695-5p 1 1 1
chr4:121833231|121855561 hsa-miR-6890-5p 1 1 1
chr4:121833231|121855561 hsa-miR-6741-5p 1 1 1
chr4:121833231|121855561 hsa-miR-6759-5p 1 1 1
chr4:121833231|121855561 hsa-miR-148a-5p 1 1 1
chr4:121833231|121855561 hsa-miR-6748-5p 1 1 1
chr4:121833231|121855561 hsa-miR-6793-5p 1 1 1
chr4:121833231|121855561 hsa-miR-6796-5p 1 1 1
chr4:121833231|121855561 hsa-miR-1343-3p 1 1 1
chr4:121833231|121855561 hsa-miR-6740-5p 1 1 1
chr4:121833231|121855561 hsa-miR-193b-5p 1 1 1
chr4:121833231|121855561 hsa-miR-483-5p 1 1 1
chr4:121833231|121855561 hsa-miR-514a-5p 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:121833231|121855561
ORF Type ORF1
Protein Length 174
Nucleotide Length 522
Protein Sequence MYAVEVPGPPTVLALHNGNGGNQDFIFHKSTMCFNIGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKDSYDEIVVSTYSVKRQLPSCHLSVPGRYYKAGTQDSLN*
Nucleotide Sequence ATGTATGCAGTTGAAGTTCCTGGACCCCCTACTGTCTTAGCACTACACAATGGAAATGGCGGTAATCAGGATTTTATTTTTCACAAATCAACTATGTGTTTTAATATAGGTGACTCTGGAGAAGACCTTTTGTTTGGGACATCAGACGGAAAACTTGCGCTTATACAGATTACTACATCCAAACCAGTACGCAAGTGGGAAATTCAAAATGAGAAAAAGAGAGGAGGTATTTTGTGTATTGACAGCTTTGACATTGTGGGTGATGGGGTTAAAGATTTACTTGTTGGGAGAGATGACGGAATGGTGGAAGTGTATAGTTTTGATAATGCAAATGAACCTGTTCTACGATTTGATCAGATGTTGTCTGAAAGCGTCACATCTATCCAGGGTGGTTGTGTAGGAAAAGACAGCTATGATGAAATCGTGGTGTCCACATATTCAGTCAAACGACAACTTCCTTCTTGCCACTTATCGGTGCCAGGCAGATACTACAAGGCTGGAACTCAAGATTCGCTCAATTGA
CircID chr4:121833231|121855561
ORF Type ORF2
Protein Length 133
Nucleotide Length 399
Protein Sequence MMKSWCPHIQSNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKTCQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGECVTFYFQNTFLDTQLESTY
Nucleotide Sequence ATGATGAAATCGTGGTGTCCACATATTCAGTCAAACGACAACTTCCTTCTTGCCACTTATCGGTGCCAGGCAGATACTACAAGGCTGGAACTCAAGATTCGCTCAATTGAAGGCCAGTATGGCACACTACAAGCATATGTGACTCCAAGAATTCAACCCAAAACCTGTCAGGTCCGCCAGTACCACATCAAACCTCTTTCACTCCATCAAAGAACTCACTTTATTGATCATGACAGACCCATGAATACACTGACCCTAACAGGCCAGTTCAGTTTTGCTGAAGTTCACTCCTGGGTGGTTTTTTGTCTGCCTGAAGTTCCAGAAAAACCTCCAGCAGGAGAATGTGTGACATTTTACTTTCAGAACACCTTTCTAGATACACAACTTGAAAGTACCTAC
CircID chr4:121833231|121855561
ORF Type ORF3
Protein Length 64
Nucleotide Length 192
Protein Sequence MRKREEVFCVLTALTLWVMGLKIYLLGEMTEWWKCIVLIMQMNLFYDLIRCCLKASHLSRVVV*
Nucleotide Sequence ATGAGAAAAAGAGAGGAGGTATTTTGTGTATTGACAGCTTTGACATTGTGGGTGATGGGGTTAAAGATTTACTTGTTGGGAGAGATGACGGAATGGTGGAAGTGTATAGTTTTGATAATGCAAATGAACCTGTTCTACGATTTGATCAGATGTTGTCTGAAAGCGTCACATCTATCCAGGGTGGTTGTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr4:121833231|121855561 KHSRP 0 0 2
chr4:121833231|121855561 ELAVL1 0 0 1
chr4:121833231|121855561 ELAVL3 0 1 0
chr4:121833231|121855561 FMR1 0 0 2
chr4:121833231|121855561 TROVE2 0 0 1
chr4:121833231|121855561 FUS 0 1 0
chr4:121833231|121855561 SRSF1 0 0 1
chr4:121833231|121855561 NOP58 0 2 2
chr4:121833231|121855561 U2AF1 0 0 1
chr4:121833231|121855561 U2AF2 7 2 8
chr4:121833231|121855561 EIF3D 1 0 0
chr4:121833231|121855561 NOP56 0 3 0
chr4:121833231|121855561 DDX54 0 0 4
chr4:121833231|121855561 RBM10 0 1 0
chr4:121833231|121855561 TRA2A 0 0 2
chr4:121833231|121855561 HNRNPA1 0 2 1
chr4:121833231|121855561 LIN28B 0 0 1
chr4:121833231|121855561 FXR1 0 0 3
chr4:121833231|121855561 FXR2 0 0 2
chr4:121833231|121855561 IGF2BP1 0 0 6
chr4:121833231|121855561 IGF2BP2 2 3 6
chr4:121833231|121855561 BUD13 0 0 1
chr4:121833231|121855561 CSTF2T 0 0 2
chr4:121833231|121855561 RNF219 0 0 1
chr4:121833231|121855561 ILF3 1 0 0
chr4:121833231|121855561 EIF4A3 0 0 9
chr4:121833231|121855561 FBL 0 0 5
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab