CircRNA Information

General Information
circRNA Basic Information
CircID chr4:1225380|1225523
Strand +
CircType exon
Host Gene ENSG00000159692.14;
Algorism CIRI2;
Sequence GGCCGACTCGACGCTGTGCCACATCCTGAACCTGTACCGGCGGGCCACCTGGCTGCACCAGGCGCTGCGGGAGGGCACACGAGTCCAGAGCGTCGAGCAGATCCGCGAGGTGGCGTCCGGCGCTGCCAGGATCCGCGGGGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:1225380|1225523 hsa-miR-422a 0 0 1
chr4:1225380|1225523 hsa-miR-552-5p 0 0 1
chr4:1225380|1225523 hsa-miR-552-3p 0 0 1
chr4:1225380|1225523 hsa-miR-663b 0 1 1
chr4:1225380|1225523 hsa-miR-1265 0 1 1
chr4:1225380|1225523 hsa-miR-127-3p 0 1 1
chr4:1225380|1225523 hsa-miR-885-3p 0 0 1
chr4:1225380|1225523 hsa-miR-767-3p 0 0 1
chr4:1225380|1225523 hsa-miR-378 0 0 1
chr4:1225380|1225523 hsa-miR-378c 0 1 0
chr4:1225380|1225523 hsa-miR-378e 0 1 0
chr4:1225380|1225523 hsa-miR-378f 0 1 0
chr4:1225380|1225523 hsa-miR-378h 0 1 0
chr4:1225380|1225523 hsa-miR-4686 0 1 0
chr4:1225380|1225523 hsa-miR-8073 0 1 0
chr4:1225380|1225523 hsa-miR-4764-5p 0 1 0
chr4:1225380|1225523 hsa-miR-7156-3p 0 1 0
chr4:1225380|1225523 hsa-miR-6720-3p 0 1 0
chr4:1225380|1225523 hsa-miR-891a-3p 0 1 0
chr4:1225380|1225523 hsa-miR-6815-5p 0 1 0
chr4:1225380|1225523 hsa-miR-378a-3p 0 1 0
chr4:1225380|1225523 hsa-miR-3150b-5p 0 1 0
chr4:1225380|1225523 hsa-miR-378d 0 1 0
chr4:1225380|1225523 hsa-miR-3150a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:1225380|1225523
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MAAPGAAGGHTSPERRADPRGGVRRCQDPRGD
Nucleotide Sequence CTGGCTGCACCAGGCGCTGCGGGAGGGCACACGAGTCCAGAGCGTCGAGCAGATCCGCGAGGTGGCGTCCGGCGCTGCCAGGATCCGCGGGGAGAC
CircID chr4:1225380|1225523
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGE
Nucleotide Sequence CTGTGCCACATCCTGAACCTGTACCGGCGGGCCACCTGGCTGCACCAGGCGCTGCGGGAGGGCACACGAGTCCAGAGCGTCGAGCAGATCCGCGAGGTGGCGTCCGGCGCTGCCAGGATCCGCGGGGAG
CircID chr4:1225380|1225523
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MAAPDATSRICSTLWTRVPSRSAWCSQVARRYRFRMWHSVESA
Nucleotide Sequence CTGGCAGCGCCGGACGCCACCTCGCGGATCTGCTCGACGCTCTGGACTCGTGTGCCCTCCCGCAGCGCCTGGTGCAGCCAGGTGGCCCGCCGGTACAGGTTCAGGATGTGGCACAGCGTCGAGTCGGCC
CircID chr4:1225380|1225523
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MLDALDSCALPQRLVQPGGPPVQVQDVAQRRVG
Nucleotide Sequence CTGCTCGACGCTCTGGACTCGTGTGCCCTCCCGCAGCGCCTGGTGCAGCCAGGTGGCCCGCCGGTACAGGTTCAGGATGTGGCACAGCGTCGAGTCGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab