CircRNA Information

General Information
circRNA Basic Information
CircID chr4:128936655|129003876
Strand -
CircType exon
Host Gene ENSG00000151466.11;
Algorism find_circ;CIRI2;DCC;
Sequence GTTGCACAGTGAATTAAAAGATGCTGTTGAAAAAAAATTGGAGGCCTTTCCCCTGGGCACAGAGGTAGGAACTGACATATATGCAGATGATGAAACAGTCAGAAACCTTCAAGAACAATTGCAGCTAGCCAATCAAGAAAAAACTCAGGCTGTGGAACTCTGGCAGACTGTTTCTCAGGAGTTGGACAGACTACACAAGCTTTACCAGGAACATATGACTGAGGCCCAGATTCATGTATTTGAAAGTCAAAAACAAAAGGATCAGCTATTTGATTTTCAACAACTGACCAAACAACTTCATGTTACTAATGAGAACATGGAAGTGACTAACCAACAGTTTCTGAAAACAGTAACTGAACAAAGTGTGATAATCGAACAACTCCGAAAAAAACTTAGGCAAGCCAAATTAGAGCTGAGAGTTGCTGTAGCAAAAGTGGAAGAGTTAACTAATGTGACTGAAGATCTGCAGGGACAGATGAAAAAGAAGGAGAAGGATGTGGTGTCTGCCCATGGAAGAGAGGAAGCATCAGATAGGCGTTTACAGCAGTTACAGTCTAGTATAAAACAATTAGAAATAAGATTATGTGTGACAATCCAAGAAGCCAACCAATTAAGAACCGAAAATACACATCTGGAAAAACAGACCAGAGAGCTACAAGCAAAGTGCAATGAATTAGAAAATGAGAGATATGAGGCTATTGTAAGAGCCAGAAATAGCATGCAACTCTTAGAAGAAGCTAACCTTCAAAAAAGTCAGGTTGCAAACACCAAAAAACAATGTAATATACAAATTTCTCGATTAACAGAAGAACTTTCAGCCCTTCAAATGGAGTGTGCTGAAAAACAAGGCCAAATTGAACGAGTCATTAAGGAAAAAAAAGCAGTGGAAGAAGAACTAGAAAAGATTTACCGTGAAGGCAGAGGAAATGAGAGTGATTACAGAAAACTGGAAGAAATGCACCAAAGATTCCTGGTTTCAGAGCGTTCAAAAGATGATCTTCAGCTAAGACTTACGAGAGCAGAAAATAGAATAAAACAACTTGAAACTGACTCCTCAGAAGAAATATCACGTTACCAAGAAATGATTCAGAAACTTCAAAATGTATTGGAGTCTGAGAGAGAGAACTGTGGGCTTGTCAGTGAACAAAGGCTAAAACTTCAGCAAGAAAATAAACAGTTACGGAAAGAGACTGAGAGTTTAAGGAAGATTGCCCTGGAGGCTCAAAAAAAAGCCAAAGTAAAGATCAGTACAATGGAACATGAATTTTCAATAAAGGAACGTGGATTTGAAGTTCAATTGAGAGAGATGGAAGACAGTAATAGAAATTCCATTGTTGAACTGAGGCATCTCCTAGCGACTCAACAGAAGGCAGCCAATAGGTGGAAAGAAGAAACGAAGAAACTTACTGAAAGTGCAGAAATTAGAATCAATAATCTAAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:128936655|129003876 hsa-let-7b-5p 0 0 1
chr4:128936655|129003876 hsa-let-7b-3p 0 0 1
chr4:128936655|129003876 hsa-let-7c-5p 0 0 1
chr4:128936655|129003876 hsa-let-7c-3p 0 0 1
chr4:128936655|129003876 hsa-let-7d-5p 0 0 1
chr4:128936655|129003876 hsa-let-7d-3p 0 0 1
chr4:128936655|129003876 hsa-let-7e-5p 0 0 1
chr4:128936655|129003876 hsa-let-7e-3p 0 0 1
chr4:128936655|129003876 hsa-miR-98-5p 0 0 1
chr4:128936655|129003876 hsa-miR-98-3p 0 0 1
chr4:128936655|129003876 hsa-miR-212-5p 0 0 1
chr4:128936655|129003876 hsa-miR-212-3p 0 0 1
chr4:128936655|129003876 hsa-let-7g-5p 0 0 1
chr4:128936655|129003876 hsa-let-7g-3p 0 0 1
chr4:128936655|129003876 hsa-let-7i-5p 0 0 1
chr4:128936655|129003876 hsa-let-7i-3p 0 0 1
chr4:128936655|129003876 hsa-miR-132-5p 0 0 1
chr4:128936655|129003876 hsa-miR-132-3p 0 0 1
chr4:128936655|129003876 hsa-miR-494-5p 0 0 1
chr4:128936655|129003876 hsa-miR-494-3p 0 0 1
chr4:128936655|129003876 hsa-miR-612 0 1 1
chr4:128936655|129003876 hsa-miR-650 0 0 1
chr4:128936655|129003876 hsa-miR-653-5p 0 0 1
chr4:128936655|129003876 hsa-miR-653-3p 0 0 1
chr4:128936655|129003876 hsa-miR-1301-5p 0 0 1
chr4:128936655|129003876 hsa-miR-1301-3p 0 0 1
chr4:128936655|129003876 hsa-miR-1267 0 0 1
chr4:128936655|129003876 hsa-miR-1272 0 1 1
chr4:128936655|129003876 hsa-miR-29b-1-5p 0 1 1
chr4:128936655|129003876 hsa-miR-134-3p 0 1 1
chr4:128936655|129003876 hsa-miR-211-3p 0 1 1
chr4:128936655|129003876 hsa-miR-134-5p 0 1 1
chr4:128936655|129003876 hsa-miR-7-5p 0 1 1
chr4:128936655|129003876 hsa-miR-29b-2-5p 0 1 1
chr4:128936655|129003876 hsa-miR-145-3p 0 1 1
chr4:128936655|129003876 hsa-miR-331-3p 0 1 1
chr4:128936655|129003876 hsa-miR-128 0 0 1
chr4:128936655|129003876 hsa-let-7a 0 0 1
chr4:128936655|129003876 hsa-let-7f 0 0 1
chr4:128936655|129003876 hsa-miR-1285 0 0 1
chr4:128936655|129003876 hsa-miR-768-5p 0 0 1
chr4:128936655|129003876 hsa-miR-3142 0 1 0
chr4:128936655|129003876 hsa-miR-3174 1 1 0
chr4:128936655|129003876 hsa-miR-4257 1 1 0
chr4:128936655|129003876 hsa-miR-4458 0 1 0
chr4:128936655|129003876 hsa-miR-6860 0 1 0
chr4:128936655|129003876 hsa-miR-8089 1 0 0
chr4:128936655|129003876 hsa-miR-4687-3p 1 0 0
chr4:128936655|129003876 hsa-miR-6089 1 0 0
chr4:128936655|129003876 hsa-miR-4653-3p 1 0 0
chr4:128936655|129003876 hsa-miR-5008-5p 1 0 0
chr4:128936655|129003876 hsa-miR-3944-5p 0 1 0
chr4:128936655|129003876 hsa-miR-589-3p 0 1 0
chr4:128936655|129003876 hsa-miR-219b-3p 0 1 0
chr4:128936655|129003876 hsa-miR-1233-5p 1 0 0
chr4:128936655|129003876 hsa-miR-5189-5p 1 1 0
chr4:128936655|129003876 hsa-miR-1285-3p 0 1 0
chr4:128936655|129003876 hsa-miR-6791-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:128936655|129003876
ORF Type ORF1
Protein Length 479
Nucleotide Length 1437
Protein Sequence LHSELKDAVEKKLEAFPLGTEVGTDIYADDETVRNLQEQLQLANQEKTQAVELWQTVSQELDRLHKLYQEHMTEAQIHVFESQKQKDQLFDFQQLTKQLHVTNENMEVTNQQFLKTVTEQSVIIEQLRKKLRQAKLELRVAVAKVEELTNVTEDLQGQMKKKEKDVVSAHGREEASDRRLQQLQSSIKQLEIRLCVTIQEANQLRTENTHLEKQTRELQAKCNELENERYEAIVRARNSMQLLEEANLQKSQVANTKKQCNIQISRLTEELSALQMECAEKQGQIERVIKEKKAVEEELEKIYREGRGNESDYRKLEEMHQRFLVSERSKDDLQLRLTRAENRIKQLETDSSEEISRYQEMIQKLQNVLESERENCGLVSEQRLKLQQENKQLRKETESLRKIALEAQKKAKVKISTMEHEFSIKERGFEVQLREMEDSNRNSIVELRHLLATQQKAANRWKEETKKLTESAEIRINNL
Nucleotide Sequence TTGCACAGTGAATTAAAAGATGCTGTTGAAAAAAAATTGGAGGCCTTTCCCCTGGGCACAGAGGTAGGAACTGACATATATGCAGATGATGAAACAGTCAGAAACCTTCAAGAACAATTGCAGCTAGCCAATCAAGAAAAAACTCAGGCTGTGGAACTCTGGCAGACTGTTTCTCAGGAGTTGGACAGACTACACAAGCTTTACCAGGAACATATGACTGAGGCCCAGATTCATGTATTTGAAAGTCAAAAACAAAAGGATCAGCTATTTGATTTTCAACAACTGACCAAACAACTTCATGTTACTAATGAGAACATGGAAGTGACTAACCAACAGTTTCTGAAAACAGTAACTGAACAAAGTGTGATAATCGAACAACTCCGAAAAAAACTTAGGCAAGCCAAATTAGAGCTGAGAGTTGCTGTAGCAAAAGTGGAAGAGTTAACTAATGTGACTGAAGATCTGCAGGGACAGATGAAAAAGAAGGAGAAGGATGTGGTGTCTGCCCATGGAAGAGAGGAAGCATCAGATAGGCGTTTACAGCAGTTACAGTCTAGTATAAAACAATTAGAAATAAGATTATGTGTGACAATCCAAGAAGCCAACCAATTAAGAACCGAAAATACACATCTGGAAAAACAGACCAGAGAGCTACAAGCAAAGTGCAATGAATTAGAAAATGAGAGATATGAGGCTATTGTAAGAGCCAGAAATAGCATGCAACTCTTAGAAGAAGCTAACCTTCAAAAAAGTCAGGTTGCAAACACCAAAAAACAATGTAATATACAAATTTCTCGATTAACAGAAGAACTTTCAGCCCTTCAAATGGAGTGTGCTGAAAAACAAGGCCAAATTGAACGAGTCATTAAGGAAAAAAAAGCAGTGGAAGAAGAACTAGAAAAGATTTACCGTGAAGGCAGAGGAAATGAGAGTGATTACAGAAAACTGGAAGAAATGCACCAAAGATTCCTGGTTTCAGAGCGTTCAAAAGATGATCTTCAGCTAAGACTTACGAGAGCAGAAAATAGAATAAAACAACTTGAAACTGACTCCTCAGAAGAAATATCACGTTACCAAGAAATGATTCAGAAACTTCAAAATGTATTGGAGTCTGAGAGAGAGAACTGTGGGCTTGTCAGTGAACAAAGGCTAAAACTTCAGCAAGAAAATAAACAGTTACGGAAAGAGACTGAGAGTTTAAGGAAGATTGCCCTGGAGGCTCAAAAAAAAGCCAAAGTAAAGATCAGTACAATGGAACATGAATTTTCAATAAAGGAACGTGGATTTGAAGTTCAATTGAGAGAGATGGAAGACAGTAATAGAAATTCCATTGTTGAACTGAGGCATCTCCTAGCGACTCAACAGAAGGCAGCCAATAGGTGGAAAGAAGAAACGAAGAAACTTACTGAAAGTGCAGAAATTAGAATCAATAATCTA
CircID chr4:128936655|129003876
ORF Type ORF2
Protein Length 141
Nucleotide Length 423
Protein Sequence MLFLALTIASYLSFSNSLHFACSSLVCFSRCVFSVLNWLASWIVTHNLISNCFILDCNCCKRLSDASSLPWADTTSFSFFFICPCRSSVTLVNSSTFATATLSSNLACLSFFRSCSIITLCSVTVFRNCWLVTSMFSLVT*
Nucleotide Sequence ATGCTATTTCTGGCTCTTACAATAGCCTCATATCTCTCATTTTCTAATTCATTGCACTTTGCTTGTAGCTCTCTGGTCTGTTTTTCCAGATGTGTATTTTCGGTTCTTAATTGGTTGGCTTCTTGGATTGTCACACATAATCTTATTTCTAATTGTTTTATACTAGACTGTAACTGCTGTAAACGCCTATCTGATGCTTCCTCTCTTCCATGGGCAGACACCACATCCTTCTCCTTCTTTTTCATCTGTCCCTGCAGATCTTCAGTCACATTAGTTAACTCTTCCACTTTTGCTACAGCAACTCTCAGCTCTAATTTGGCTTGCCTAAGTTTTTTTCGGAGTTGTTCGATTATCACACTTTGTTCAGTTACTGTTTTCAGAAACTGTTGGTTAGTCACTTCCATGTTCTCATTAGTAACATGA
CircID chr4:128936655|129003876
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MCDNPRSQPIKNRKYTSGKTDQRATSKVQ*
Nucleotide Sequence ATGTGTGACAATCCAAGAAGCCAACCAATTAAGAACCGAAAATACACATCTGGAAAAACAGACCAGAGAGCTACAAGCAAAGTGCAATGA
CircID chr4:128936655|129003876
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MQLFLKVSDCFIICIYVSSYLCAQGKGLQFFFNSIF
Nucleotide Sequence CTGCAATTGTTCTTGAAGGTTTCTGACTGTTTCATCATCTGCATATATGTCAGTTCCTACCTCTGTGCCCAGGGGAAAGGCCTCCAATTTTTTTTCAACAGCATCTTTTAA
CircID chr4:128936655|129003876
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MTVSSSAYMSVPTSVPRGKASNFFSTASFNSLCN
Nucleotide Sequence CTGACTGTTTCATCATCTGCATATATGTCAGTTCCTACCTCTGTGCCCAGGGGAAAGGCCTCCAATTTTTTTTCAACAGCATCTTTTAATTCACTGTGCAAC
CircID chr4:128936655|129003876
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MFHHLHICQFLPLCPGERPPIFFQQHLLIHCA
Nucleotide Sequence CTGTTTCATCATCTGCATATATGTCAGTTCCTACCTCTGTGCCCAGGGGAAAGGCCTCCAATTTTTTTTCAACAGCATCTTTTAATTCACTGTGCA
CircID chr4:128936655|129003876
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence LHSELKDAVEKKLEAFPLGTEVGTDIYADDETVRNLQEQLQLANQSK
Nucleotide Sequence TTGCACAGTGAATTAAAAGATGCTGTTGAAAAAAAATTGGAGGCCTTTCCCCTGGGCACAGAGGTAGGAACTGACATATATGCAGATGATGAAACAGTCAGAAACCTTCAAGAACAATTGCAGCTAGCCAATCAATCTAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr4:128936655|129003876 KHSRP 1 0 0
chr4:128936655|129003876 ELAVL1 0 0 3
chr4:128936655|129003876 FAM120A 0 0 1
chr4:128936655|129003876 PRPF8 0 1 0
chr4:128936655|129003876 FMR1 0 0 6
chr4:128936655|129003876 FUS 0 1 0
chr4:128936655|129003876 DGCR8 0 0 2
chr4:128936655|129003876 SRSF1 0 0 2
chr4:128936655|129003876 U2AF2 24 1 0
chr4:128936655|129003876 U2AF1 0 0 1
chr4:128936655|129003876 NOP56 1 0 0
chr4:128936655|129003876 DDX54 0 0 9
chr4:128936655|129003876 SF3A3 1 0 0
chr4:128936655|129003876 TRA2A 0 0 1
chr4:128936655|129003876 LIN28B 0 0 1
chr4:128936655|129003876 IGF2BP3 0 0 1
chr4:128936655|129003876 IGF2BP2 1 1 27
chr4:128936655|129003876 NOP58 0 0 8
chr4:128936655|129003876 BUD13 0 0 2
chr4:128936655|129003876 EIF4G2 0 0 1
chr4:128936655|129003876 TIAL1 1 0 0
chr4:128936655|129003876 EIF4A3 0 2 23
chr4:128936655|129003876 FBL 0 0 4
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab