CircRNA Information

General Information
circRNA Basic Information
CircID chr4:13576838|13576980
Strand -
CircType exon
Host Gene ENSG00000038219.11;
Algorism CIRI2;
Sequence CTCTGAGCCTCTGATCTGGTGGTGGATCTTGTGGTGGCTCCTGAAGGCTCGTCCTCTTCCTCTTCTTCCTCTTCCTCATCAGACTCCTGCTCTTTCTTGTCCTCCACTGGATCAGAAACTGATTTCTGGCGTTTTCTTTCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:13576838|13576980 hsa-miR-383-5p 0 0 1
chr4:13576838|13576980 hsa-miR-383-3p 0 0 1
chr4:13576838|13576980 hsa-miR-640 0 0 1
chr4:13576838|13576980 hsa-miR-765 1 1 1
chr4:13576838|13576980 hsa-miR-1276 0 0 1
chr4:13576838|13576980 hsa-miR-1825 0 0 1
chr4:13576838|13576980 hsa-miR-199a-5p 0 0 1
chr4:13576838|13576980 hsa-miR-199b-5p 0 0 1
chr4:13576838|13576980 hsa-miR-220b 0 0 1
chr4:13576838|13576980 hsa-miR-24 0 0 1
chr4:13576838|13576980 hsa-miR-583 1 0 0
chr4:13576838|13576980 hsa-miR-650 1 0 0
chr4:13576838|13576980 hsa-miR-2110 1 0 0
chr4:13576838|13576980 hsa-miR-2278 0 1 0
chr4:13576838|13576980 hsa-miR-3125 1 1 0
chr4:13576838|13576980 hsa-miR-3132 1 0 0
chr4:13576838|13576980 hsa-miR-3154 1 0 0
chr4:13576838|13576980 hsa-miR-4271 1 0 0
chr4:13576838|13576980 hsa-miR-3916 1 1 0
chr4:13576838|13576980 hsa-miR-4476 1 0 0
chr4:13576838|13576980 hsa-miR-4502 0 1 0
chr4:13576838|13576980 hsa-miR-2392 1 0 0
chr4:13576838|13576980 hsa-miR-4510 1 1 0
chr4:13576838|13576980 hsa-miR-4533 1 0 0
chr4:13576838|13576980 hsa-miR-4657 1 0 0
chr4:13576838|13576980 hsa-miR-4688 1 0 0
chr4:13576838|13576980 hsa-miR-4689 1 0 0
chr4:13576838|13576980 hsa-miR-6077 1 0 0
chr4:13576838|13576980 hsa-miR-6088 1 0 0
chr4:13576838|13576980 hsa-miR-6124 1 0 0
chr4:13576838|13576980 hsa-miR-6127 1 0 0
chr4:13576838|13576980 hsa-miR-6133 1 0 0
chr4:13576838|13576980 hsa-miR-6165 1 1 0
chr4:13576838|13576980 hsa-miR-8085 1 0 0
chr4:13576838|13576980 hsa-miR-9500 1 0 0
chr4:13576838|13576980 hsa-miR-12115 0 1 0
chr4:13576838|13576980 hsa-miR-12118 1 0 0
chr4:13576838|13576980 hsa-miR-4433b-3p 1 0 0
chr4:13576838|13576980 hsa-miR-6747-5p 1 0 0
chr4:13576838|13576980 hsa-miR-4433a-3p 1 1 0
chr4:13576838|13576980 hsa-miR-6765-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6894-5p 1 0 0
chr4:13576838|13576980 hsa-miR-125a-3p 1 0 0
chr4:13576838|13576980 hsa-miR-6510-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6833-5p 1 0 0
chr4:13576838|13576980 hsa-miR-5187-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6515-5p 0 1 0
chr4:13576838|13576980 hsa-miR-6873-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6880-5p 1 1 0
chr4:13576838|13576980 hsa-miR-7847-3p 1 1 0
chr4:13576838|13576980 hsa-miR-4695-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6746-5p 1 0 0
chr4:13576838|13576980 hsa-miR-4709-3p 1 0 0
chr4:13576838|13576980 hsa-miR-4722-5p 1 0 0
chr4:13576838|13576980 hsa-miR-7154-3p 1 1 0
chr4:13576838|13576980 hsa-miR-3928-3p 1 0 0
chr4:13576838|13576980 hsa-miR-6721-5p 1 0 0
chr4:13576838|13576980 hsa-miR-197-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6760-5p 1 1 0
chr4:13576838|13576980 hsa-miR-1226-5p 1 0 0
chr4:13576838|13576980 hsa-miR-4732-5p 1 0 0
chr4:13576838|13576980 hsa-miR-3202 1 1 0
chr4:13576838|13576980 hsa-miR-3191-3p 1 0 0
chr4:13576838|13576980 hsa-miR-4763-3p 1 0 0
chr4:13576838|13576980 hsa-miR-6743-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6851-5p 1 0 0
chr4:13576838|13576980 hsa-miR-11181-3p 1 0 0
chr4:13576838|13576980 hsa-miR-1249-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6722-3p 1 1 0
chr4:13576838|13576980 hsa-miR-6788-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6879-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6780b-5p 1 0 0
chr4:13576838|13576980 hsa-miR-4649-5p 1 0 0
chr4:13576838|13576980 hsa-miR-4725-3p 1 0 0
chr4:13576838|13576980 hsa-miR-4726-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6729-5p 1 0 0
chr4:13576838|13576980 hsa-miR-675-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6795-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6846-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6848-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6858-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6887-5p 1 0 0
chr4:13576838|13576980 hsa-miR-4436b-3p 1 0 0
chr4:13576838|13576980 hsa-miR-6831-5p 1 1 0
chr4:13576838|13576980 hsa-miR-6511a-5p 1 0 0
chr4:13576838|13576980 hsa-miR-4665-5p 1 0 0
chr4:13576838|13576980 hsa-miR-3173-3p 1 0 0
chr4:13576838|13576980 hsa-miR-3679-5p 0 1 0
chr4:13576838|13576980 hsa-miR-6876-5p 1 0 0
chr4:13576838|13576980 hsa-miR-6529-5p 0 1 0
chr4:13576838|13576980 hsa-miR-6859-5p 1 1 0
chr4:13576838|13576980 hsa-miR-9902 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:13576838|13576980
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MVVDLVVAPEGSSSSSSSSSSSDSCSFLSSTGSETDFWRFLS
Nucleotide Sequence CTGGTGGTGGATCTTGTGGTGGCTCCTGAAGGCTCGTCCTCTTCCTCTTCTTCCTCTTCCTCATCAGACTCCTGCTCTTTCTTGTCCTCCACTGGATCAGAAACTGATTTCTGGCGTTTTCTTTCT
CircID chr4:13576838|13576980
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MIWWWILWWLLKARPLPLLPLPHQTPALSCPPLDQKLISGVFFL
Nucleotide Sequence CTGATCTGGTGGTGGATCTTGTGGTGGCTCCTGAAGGCTCGTCCTCTTCCTCTTCTTCCTCTTCCTCATCAGACTCCTGCTCTTTCTTGTCCTCCACTGGATCAGAAACTGATTTCTGGCGTTTTCTTTCTG
CircID chr4:13576838|13576980
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MIQWRTRKSRSLMRKRKKRKRTSLQEPPQDPPPDQRLR
Nucleotide Sequence CTGATCCAGTGGAGGACAAGAAAGAGCAGGAGTCTGATGAGGAAGAGGAAGAAGAGGAAGAGGACGAGCCTTCAGGAGCCACCACAAGATCCACCACCAGATCAGAGGCTCAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab