CircRNA Information

General Information
circRNA Basic Information
CircID chr4:13601625|13601804
Strand -
CircType exon
Host Gene ENSG00000038219.11;
Algorism CIRI2;
Sequence CTGCACCTGTAACCATGCGTTCCTCCCGGGGCCCTGCTCCAGTTACTGAGCAGATCACAAAGTTATCACTTCTGCCTTCTGCTCCTGTACATGTCACAGTGCCCTCTGTTTCTTTTTTGGGACCCATTCTCATCATATTTCCCTGGGAGCCATCCACCTCTTCACTGCTTATAGATCCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:13601625|13601804 hsa-miR-552-5p 0 0 1
chr4:13601625|13601804 hsa-miR-552-3p 0 0 1
chr4:13601625|13601804 hsa-miR-580-5p 0 0 1
chr4:13601625|13601804 hsa-miR-580-3p 0 0 1
chr4:13601625|13601804 hsa-miR-758-5p 0 0 1
chr4:13601625|13601804 hsa-miR-758-3p 0 0 1
chr4:13601625|13601804 hsa-miR-298 0 1 1
chr4:13601625|13601804 hsa-miR-1272 0 0 1
chr4:13601625|13601804 hsa-miR-1322 0 0 1
chr4:13601625|13601804 hsa-miR-296-5p 0 0 1
chr4:13601625|13601804 hsa-miR-409-5p 0 0 1
chr4:13601625|13601804 hsa-miR-767-3p 0 0 1
chr4:13601625|13601804 hsa-miR-582-3p 0 0 1
chr4:13601625|13601804 hsa-miR-542-3p 0 0 1
chr4:13601625|13601804 hsa-miR-638 1 0 0
chr4:13601625|13601804 hsa-miR-762 1 0 0
chr4:13601625|13601804 hsa-miR-765 1 0 0
chr4:13601625|13601804 hsa-miR-940 1 0 0
chr4:13601625|13601804 hsa-miR-1182 1 1 0
chr4:13601625|13601804 hsa-miR-3154 1 0 0
chr4:13601625|13601804 hsa-miR-3185 1 0 0
chr4:13601625|13601804 hsa-miR-4270 1 0 0
chr4:13601625|13601804 hsa-miR-4281 1 1 0
chr4:13601625|13601804 hsa-miR-3714 0 1 0
chr4:13601625|13601804 hsa-miR-3918 0 1 0
chr4:13601625|13601804 hsa-miR-3936 0 1 0
chr4:13601625|13601804 hsa-miR-4449 1 0 0
chr4:13601625|13601804 hsa-miR-3135b 1 0 0
chr4:13601625|13601804 hsa-miR-4468 0 1 0
chr4:13601625|13601804 hsa-miR-4651 1 0 0
chr4:13601625|13601804 hsa-miR-4686 0 1 0
chr4:13601625|13601804 hsa-miR-4739 1 0 0
chr4:13601625|13601804 hsa-miR-6081 1 1 0
chr4:13601625|13601804 hsa-miR-6125 1 0 0
chr4:13601625|13601804 hsa-miR-8088 0 1 0
chr4:13601625|13601804 hsa-miR-12120 1 1 0
chr4:13601625|13601804 hsa-miR-12127 1 0 0
chr4:13601625|13601804 hsa-miR-12131 1 0 0
chr4:13601625|13601804 hsa-miR-432-3p 1 1 0
chr4:13601625|13601804 hsa-miR-4433a-3p 1 0 0
chr4:13601625|13601804 hsa-miR-6765-5p 1 0 0
chr4:13601625|13601804 hsa-miR-7106-5p 1 1 0
chr4:13601625|13601804 hsa-miR-6894-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6799-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6510-5p 0 1 0
chr4:13601625|13601804 hsa-miR-766-5p 1 1 0
chr4:13601625|13601804 hsa-miR-4695-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4709-3p 1 1 0
chr4:13601625|13601804 hsa-miR-6730-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4655-5p 1 0 0
chr4:13601625|13601804 hsa-miR-3605-5p 0 1 0
chr4:13601625|13601804 hsa-miR-1292-5p 1 0 0
chr4:13601625|13601804 hsa-miR-3180-3p 1 0 0
chr4:13601625|13601804 hsa-miR-6798-5p 1 0 0
chr4:13601625|13601804 hsa-miR-2467-3p 1 0 0
chr4:13601625|13601804 hsa-miR-6782-5p 1 1 0
chr4:13601625|13601804 hsa-miR-1226-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4738-3p 1 0 0
chr4:13601625|13601804 hsa-miR-6771-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4713-3p 1 0 0
chr4:13601625|13601804 hsa-miR-149-3p 1 0 0
chr4:13601625|13601804 hsa-miR-3616-3p 1 1 0
chr4:13601625|13601804 hsa-miR-3162-5p 1 0 0
chr4:13601625|13601804 hsa-miR-5584-5p 0 1 0
chr4:13601625|13601804 hsa-miR-7160-3p 0 1 0
chr4:13601625|13601804 hsa-miR-7113-5p 0 1 0
chr4:13601625|13601804 hsa-miR-6792-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4746-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4797-3p 0 1 0
chr4:13601625|13601804 hsa-miR-1207-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4763-3p 1 0 0
chr4:13601625|13601804 hsa-miR-6769b-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6778-5p 1 0 0
chr4:13601625|13601804 hsa-miR-3180 1 0 0
chr4:13601625|13601804 hsa-miR-6737-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6743-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6819-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6851-5p 1 0 0
chr4:13601625|13601804 hsa-miR-1249-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6722-3p 1 0 0
chr4:13601625|13601804 hsa-miR-6797-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6875-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6780b-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6836-5p 1 1 0
chr4:13601625|13601804 hsa-miR-328-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4685-5p 1 0 0
chr4:13601625|13601804 hsa-miR-4725-3p 1 0 0
chr4:13601625|13601804 hsa-miR-4745-5p 1 1 0
chr4:13601625|13601804 hsa-miR-6735-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6846-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6858-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6883-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6831-5p 1 0 0
chr4:13601625|13601804 hsa-miR-1910-3p 1 1 0
chr4:13601625|13601804 hsa-miR-6511a-5p 1 1 0
chr4:13601625|13601804 hsa-miR-1914-3p 1 0 0
chr4:13601625|13601804 hsa-miR-6785-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6859-5p 1 0 0
chr4:13601625|13601804 hsa-miR-3619-5p 1 0 0
chr4:13601625|13601804 hsa-miR-6764-5p 0 1 0
chr4:13601625|13601804 hsa-miR-2682-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:13601625|13601804
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MLQLLSRSQSYHFCLLLLYMSQCPLFLFWDPFSSYFPGSHPPLHCL
Nucleotide Sequence CTGCTCCAGTTACTGAGCAGATCACAAAGTTATCACTTCTGCCTTCTGCTCCTGTACATGTCACAGTGCCCTCTGTTTCTTTTTTGGGACCCATTCTCATCATATTTCCCTGGGAGCCATCCACCTCTTCACTGCTTATAG
CircID chr4:13601625|13601804
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MRSSRGPAPVTEQITKLSLLPSAPVHVTVPSVSFLGPILIIFPWEPSTSSLLIDP
Nucleotide Sequence ATGCGTTCCTCCCGGGGCCCTGCTCCAGTTACTGAGCAGATCACAAAGTTATCACTTCTGCCTTCTGCTCCTGTACATGTCACAGTGCCCTCTGTTTCTTTTTTGGGACCCATTCTCATCATATTTCCCTGGGAGCCATCCACCTCTTCACTGCTTATAGATCCT
CircID chr4:13601625|13601804
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MMRMGPKKETEGTVTCTGAEGRSDNFVICSVTGAGPREERMVTGA
Nucleotide Sequence ATGATGAGAATGGGTCCCAAAAAAGAAACAGAGGGCACTGTGACATGTACAGGAGCAGAAGGCAGAAGTGATAACTTTGTGATCTGCTCAGTAACTGGAGCAGGGCCCCGGGAGGAACGCATGGTTACAGGTGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab