CircRNA Information

General Information
circRNA Basic Information
CircID chr4:139067503|139067683
Strand -
CircType exon
Host Gene ENSG00000109381.18;
Algorism CIRI2;
Sequence TGGGCACAGATATTTTGAAAAAGCTCCCCACGTGATGCTGATACATCCCTTATTAAGAACTATTACCAGCGACAGTATTCTCATATGTGCATGTACTAGAAATAGTTTTCTTACAAATACAAAAATGTCACCTAACTGAAAAAAAATCATCTCACTTCCAAAGCAACCCTCCCCAAATTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:139067503|139067683 hsa-miR-200b-5p 0 0 1
chr4:139067503|139067683 hsa-miR-200b-3p 0 0 1
chr4:139067503|139067683 hsa-miR-143-5p 0 0 1
chr4:139067503|139067683 hsa-miR-143-3p 0 0 1
chr4:139067503|139067683 hsa-miR-200c-5p 0 0 1
chr4:139067503|139067683 hsa-miR-200c-3p 0 0 1
chr4:139067503|139067683 hsa-miR-325 0 0 1
chr4:139067503|139067683 hsa-miR-429 0 1 1
chr4:139067503|139067683 hsa-miR-580-5p 0 0 1
chr4:139067503|139067683 hsa-miR-580-3p 0 0 1
chr4:139067503|139067683 hsa-miR-607 0 0 1
chr4:139067503|139067683 hsa-miR-633 0 0 1
chr4:139067503|139067683 hsa-miR-920 0 0 1
chr4:139067503|139067683 hsa-miR-935 0 0 1
chr4:139067503|139067683 hsa-miR-939-5p 0 0 1
chr4:139067503|139067683 hsa-miR-939-3p 0 0 1
chr4:139067503|139067683 hsa-miR-1305 0 0 1
chr4:139067503|139067683 hsa-miR-491-5p 0 0 1
chr4:139067503|139067683 hsa-miR-296-3p 1 1 1
chr4:139067503|139067683 hsa-miR-628-3p 0 0 1
chr4:139067503|139067683 hsa-miR-608 1 0 0
chr4:139067503|139067683 hsa-miR-658 1 0 0
chr4:139067503|139067683 hsa-miR-765 1 0 0
chr4:139067503|139067683 hsa-miR-1275 1 0 0
chr4:139067503|139067683 hsa-miR-2110 1 0 0
chr4:139067503|139067683 hsa-miR-3175 1 0 0
chr4:139067503|139067683 hsa-miR-3936 1 1 0
chr4:139067503|139067683 hsa-miR-4488 1 0 0
chr4:139067503|139067683 hsa-miR-4651 1 0 0
chr4:139067503|139067683 hsa-miR-5194 1 0 0
chr4:139067503|139067683 hsa-miR-5572 1 0 0
chr4:139067503|139067683 hsa-miR-5698 1 0 0
chr4:139067503|139067683 hsa-miR-6085 1 0 0
chr4:139067503|139067683 hsa-miR-12128 1 0 0
chr4:139067503|139067683 hsa-miR-3150a-3p 1 1 0
chr4:139067503|139067683 hsa-miR-7106-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6825-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6857-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6799-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6804-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6515-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6721-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6871-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6796-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6829-5p 1 0 0
chr4:139067503|139067683 hsa-miR-656-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6827-5p 1 0 0
chr4:139067503|139067683 hsa-miR-23a-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6782-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6810-5p 1 0 0
chr4:139067503|139067683 hsa-miR-7109-5p 1 0 0
chr4:139067503|139067683 hsa-miR-1229-5p 1 0 0
chr4:139067503|139067683 hsa-miR-1228-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6771-5p 1 0 0
chr4:139067503|139067683 hsa-miR-4717-3p 1 0 0
chr4:139067503|139067683 hsa-miR-149-3p 1 0 0
chr4:139067503|139067683 hsa-miR-6824-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6802-5p 1 0 0
chr4:139067503|139067683 hsa-miR-450a-2-3p 1 0 0
chr4:139067503|139067683 hsa-miR-6787-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6816-5p 1 0 0
chr4:139067503|139067683 hsa-miR-1343-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6737-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6756-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6803-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6819-5p 1 0 0
chr4:139067503|139067683 hsa-miR-7110-5p 1 0 0
chr4:139067503|139067683 hsa-miR-1249-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6763-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6779-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6780a-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6797-5p 1 0 0
chr4:139067503|139067683 hsa-miR-7111-5p 1 0 0
chr4:139067503|139067683 hsa-miR-4728-5p 1 0 0
chr4:139067503|139067683 hsa-miR-5196-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6780b-5p 1 0 0
chr4:139067503|139067683 hsa-miR-1237-5p 1 0 0
chr4:139067503|139067683 hsa-miR-4725-3p 1 0 0
chr4:139067503|139067683 hsa-miR-6846-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6858-5p 1 0 0
chr4:139067503|139067683 hsa-miR-6883-5p 1 1 0
chr4:139067503|139067683 hsa-miR-4472 1 0 0
chr4:139067503|139067683 hsa-miR-6785-5p 1 0 0
chr4:139067503|139067683 hsa-miR-4667-5p 1 0 0
chr4:139067503|139067683 hsa-miR-342-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:139067503|139067683
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MLIHPLLRTITSDSILICACTRNSFLTNTKMSPN
Nucleotide Sequence ATGCTGATACATCCCTTATTAAGAACTATTACCAGCGACAGTATTCTCATATGTGCATGTACTAGAAATAGTTTTCTTACAAATACAAAAATGTCACCTAACTGA
CircID chr4:139067503|139067683
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MIFFQLGDIFVFVRKLFLVHAHMRILSLVIVLNKGCISITWGAFSKYLCP
Nucleotide Sequence ATGATTTTTTTTCAGTTAGGTGACATTTTTGTATTTGTAAGAAAACTATTTCTAGTACATGCACATATGAGAATACTGTCGCTGGTAATAGTTCTTAATAAGGGATGTATCAGCATCACGTGGGGAGCTTTTTCAAAATATCTGTGCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab