CircRNA Information

General Information
circRNA Basic Information
CircID chr4:139718842|139718963
Strand -
CircType exon
Host Gene ENSG00000196782.11;
Algorism CIRI2;
Sequence CTGGCCTGTGCAACCACCCAGCCTCTTCTGGGGGACTCACTCTCCCTGGCTGAGGCTCTGTCTCTTTTGTGTCTCCAAAGCTGCTGTCTCCCGACCTGGGGCAGGAGGGGCTGAGGATACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:139718842|139718963 hsa-miR-620 0 0 1
chr4:139718842|139718963 hsa-miR-646 0 0 1
chr4:139718842|139718963 hsa-miR-1293 0 0 1
chr4:139718842|139718963 hsa-miR-1270 1 1 1
chr4:139718842|139718963 hsa-miR-485-5p 0 1 1
chr4:139718842|139718963 hsa-miR-361-3p 0 0 1
chr4:139718842|139718963 hsa-miR-876-3p 0 0 1
chr4:139718842|139718963 hsa-miR-324-3p 0 0 1
chr4:139718842|139718963 hsa-miR-768-5p 0 0 1
chr4:139718842|139718963 hsa-miR-650 1 0 0
chr4:139718842|139718963 hsa-miR-762 1 0 0
chr4:139718842|139718963 hsa-miR-1976 0 1 0
chr4:139718842|139718963 hsa-miR-4298 1 0 0
chr4:139718842|139718963 hsa-miR-4268 0 1 0
chr4:139718842|139718963 hsa-miR-3621 1 0 0
chr4:139718842|139718963 hsa-miR-3918 1 1 0
chr4:139718842|139718963 hsa-miR-3935 1 0 0
chr4:139718842|139718963 hsa-miR-4425 1 0 0
chr4:139718842|139718963 hsa-miR-4492 1 0 0
chr4:139718842|139718963 hsa-miR-4505 1 0 0
chr4:139718842|139718963 hsa-miR-4508 1 0 0
chr4:139718842|139718963 hsa-miR-1587 1 0 0
chr4:139718842|139718963 hsa-miR-4644 1 1 0
chr4:139718842|139718963 hsa-miR-4651 1 0 0
chr4:139718842|139718963 hsa-miR-4656 1 0 0
chr4:139718842|139718963 hsa-miR-5192 0 1 0
chr4:139718842|139718963 hsa-miR-5787 1 0 0
chr4:139718842|139718963 hsa-miR-6085 1 0 0
chr4:139718842|139718963 hsa-miR-6086 1 0 0
chr4:139718842|139718963 hsa-miR-8089 1 0 0
chr4:139718842|139718963 hsa-miR-92a-1-5p 1 1 0
chr4:139718842|139718963 hsa-miR-3157-5p 0 1 0
chr4:139718842|139718963 hsa-miR-6894-5p 1 0 0
chr4:139718842|139718963 hsa-miR-139-3p 1 0 0
chr4:139718842|139718963 hsa-miR-6089 1 0 0
chr4:139718842|139718963 hsa-miR-4695-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6746-5p 1 1 0
chr4:139718842|139718963 hsa-miR-593-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6727-5p 1 0 0
chr4:139718842|139718963 hsa-miR-5589-5p 1 1 0
chr4:139718842|139718963 hsa-miR-615-3p 1 0 0
chr4:139718842|139718963 hsa-miR-939-3p 1 0 0
chr4:139718842|139718963 hsa-miR-4693-3p 0 1 0
chr4:139718842|139718963 hsa-miR-4640-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6771-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6769a-3p 0 1 0
chr4:139718842|139718963 hsa-let-7e-5p 1 0 0
chr4:139718842|139718963 hsa-miR-873-3p 1 0 0
chr4:139718842|139718963 hsa-miR-1251-3p 1 0 0
chr4:139718842|139718963 hsa-miR-2114-3p 0 1 0
chr4:139718842|139718963 hsa-miR-7113-5p 0 1 0
chr4:139718842|139718963 hsa-miR-4749-3p 1 1 0
chr4:139718842|139718963 hsa-miR-4524a-3p 0 1 0
chr4:139718842|139718963 hsa-miR-5197-3p 0 1 0
chr4:139718842|139718963 hsa-miR-6857-3p 1 0 0
chr4:139718842|139718963 hsa-miR-627-5p 0 1 0
chr4:139718842|139718963 hsa-miR-1343-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6743-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6754-5p 0 1 0
chr4:139718842|139718963 hsa-miR-6756-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6813-5p 1 0 0
chr4:139718842|139718963 hsa-miR-1915-3p 1 0 0
chr4:139718842|139718963 hsa-miR-3620-5p 1 0 0
chr4:139718842|139718963 hsa-miR-4726-5p 1 0 0
chr4:139718842|139718963 hsa-miR-4745-5p 1 1 0
chr4:139718842|139718963 hsa-miR-6795-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6887-5p 1 0 0
chr4:139718842|139718963 hsa-miR-4665-5p 1 0 0
chr4:139718842|139718963 hsa-miR-6837-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:139718842|139718963
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence LACATTQPLLGDSLSLAEALSLLCLQSCCLPTWGRRG
Nucleotide Sequence CTGGCCTGTGCAACCACCCAGCCTCTTCTGGGGGACTCACTCTCCCTGGCTGAGGCTCTGTCTCTTTTGTGTCTCCAAAGCTGCTGTCTCCCGACCTGGGGCAGGAGGGGCTGA
CircID chr4:139718842|139718963
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MPQVGRQQLWRHKRDRASARESESPRRGWVVAQA
Nucleotide Sequence CTGCCCCAGGTCGGGAGACAGCAGCTTTGGAGACACAAAAGAGACAGAGCCTCAGCCAGGGAGAGTGAGTCCCCCAGAAGAGGCTGGGTGGTTGCACAGGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab