CircRNA Information

General Information
circRNA Basic Information
CircID chr4:139847489|139847641
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCTGTACTTAATTGATCCTGTTCACCAGGGCAATCAGCTTCCTAGTGCTAGCAATGGCACTTTGTTTCTTAATCAGTTCCCAATTCTCTAAATCATATTTAAAAGGCTTTGTACGGAAGCCCAGAAAACAGTGTTCCAGTTTATCTGATAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:139847489|139847641 hsa-miR-17-5p 0 0 1
chr4:139847489|139847641 hsa-miR-17-3p 0 0 1
chr4:139847489|139847641 hsa-miR-20a-5p 0 0 1
chr4:139847489|139847641 hsa-miR-20a-3p 0 0 1
chr4:139847489|139847641 hsa-miR-93-5p 0 0 1
chr4:139847489|139847641 hsa-miR-93-3p 0 0 1
chr4:139847489|139847641 hsa-miR-106a-5p 0 0 1
chr4:139847489|139847641 hsa-miR-106a-3p 0 0 1
chr4:139847489|139847641 hsa-miR-141-5p 0 0 1
chr4:139847489|139847641 hsa-miR-141-3p 0 0 1
chr4:139847489|139847641 hsa-miR-106b-5p 0 0 1
chr4:139847489|139847641 hsa-miR-106b-3p 0 0 1
chr4:139847489|139847641 hsa-miR-200a-5p 0 0 1
chr4:139847489|139847641 hsa-miR-200a-3p 0 0 1
chr4:139847489|139847641 hsa-miR-20b-5p 0 0 1
chr4:139847489|139847641 hsa-miR-20b-3p 0 0 1
chr4:139847489|139847641 hsa-miR-452-5p 0 0 1
chr4:139847489|139847641 hsa-miR-452-3p 0 0 1
chr4:139847489|139847641 hsa-miR-519d-5p 0 0 1
chr4:139847489|139847641 hsa-miR-519d-3p 0 0 1
chr4:139847489|139847641 hsa-miR-520g-5p 0 0 1
chr4:139847489|139847641 hsa-miR-520g-3p 0 0 1
chr4:139847489|139847641 hsa-miR-520h 0 0 1
chr4:139847489|139847641 hsa-miR-577 0 0 1
chr4:139847489|139847641 hsa-miR-612 0 0 1
chr4:139847489|139847641 hsa-miR-621 0 0 1
chr4:139847489|139847641 hsa-miR-874-5p 0 0 1
chr4:139847489|139847641 hsa-miR-874-3p 0 0 1
chr4:139847489|139847641 hsa-miR-1208 0 0 1
chr4:139847489|139847641 hsa-miR-1303 0 0 1
chr4:139847489|139847641 hsa-miR-548g-5p 0 0 1
chr4:139847489|139847641 hsa-miR-548g-3p 0 0 1
chr4:139847489|139847641 hsa-miR-1292-5p 0 0 1
chr4:139847489|139847641 hsa-miR-1292-3p 0 0 1
chr4:139847489|139847641 hsa-miR-361-5p 0 0 1
chr4:139847489|139847641 hsa-miR-146b-3p 0 0 1
chr4:139847489|139847641 hsa-miR-524-5p 0 0 1
chr4:139847489|139847641 hsa-miR-520d-5p 0 0 1
chr4:139847489|139847641 hsa-miR-1285 0 0 1
chr4:139847489|139847641 hsa-miR-1243 1 0 0
chr4:139847489|139847641 hsa-miR-3138 1 0 0
chr4:139847489|139847641 hsa-miR-4471 0 1 0
chr4:139847489|139847641 hsa-miR-4539 1 0 0
chr4:139847489|139847641 hsa-miR-8059 0 1 0
chr4:139847489|139847641 hsa-miR-12120 0 1 0
chr4:139847489|139847641 hsa-miR-671-5p 1 0 0
chr4:139847489|139847641 hsa-miR-5584-5p 1 0 0
chr4:139847489|139847641 hsa-miR-4652-5p 0 1 0
chr4:139847489|139847641 hsa-miR-584-5p 1 0 0
chr4:139847489|139847641 hsa-miR-329-5p 0 1 0
chr4:139847489|139847641 hsa-miR-4797-5p 0 1 0
chr4:139847489|139847641 hsa-miR-3678-5p 0 1 0
chr4:139847489|139847641 hsa-miR-6726-5p 1 0 0
chr4:139847489|139847641 hsa-miR-939-5p 1 0 0
chr4:139847489|139847641 hsa-miR-3085-5p 0 1 0
chr4:139847489|139847641 hsa-miR-10400-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:139847489|139847641
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MYLIDPVHQGNQLPSASNGTLFLNQFPIL
Nucleotide Sequence CTGTACTTAATTGATCCTGTTCACCAGGGCAATCAGCTTCCTAGTGCTAGCAATGGCACTTTGTTTCTTAATCAGTTCCCAATTCTCTAA
CircID chr4:139847489|139847641
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MILFTRAISFLVLAMALCFLISSQFSKSYLKGFVRKPRKQCSSLSD
Nucleotide Sequence TTGATCCTGTTCACCAGGGCAATCAGCTTCCTAGTGCTAGCAATGGCACTTTGTTTCTTAATCAGTTCCCAATTCTCTAAATCATATTTAAAAGGCTTTGTACGGAAGCCCAGAAAACAGTGTTCCAGTTTATCTGAT
CircID chr4:139847489|139847641
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MEHCFLGFRTKPFKYDLENWELIKKQSAIASTRKLIALVNRIN
Nucleotide Sequence CTGGAACACTGTTTTCTGGGCTTCCGTACAAAGCCTTTTAAATATGATTTAGAGAATTGGGAACTGATTAAGAAACAAAGTGCCATTGCTAGCACTAGGAAGCTGATTGCCCTGGTGAACAGGATCAATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab