CircRNA Information

General Information
circRNA Basic Information
CircID chr4:141233840|141234027
Strand +
CircType exon
Host Gene ENSG00000109445.9;
Algorism CIRI2;
Sequence TCCTGCTCCTCTCACACACGGCCACCAGAGCAGCTCCCCTAGTTCTCTTGTTCCTCATAGTGAGCATAGCCACTAGCATAGGTCCTTCCTAAATTCAAATTAGTAAACAAATCTGATGACTCAGTATCTGAATCCTTTCTGCCTTCATCTTCTTCCTCTTCATCATCCTCTGCTTCATACTCATCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:141233840|141234027 hsa-miR-146a-5p 0 0 1
chr4:141233840|141234027 hsa-miR-146a-3p 0 0 1
chr4:141233840|141234027 hsa-miR-496 0 0 1
chr4:141233840|141234027 hsa-miR-558 0 0 1
chr4:141233840|141234027 hsa-miR-651-5p 0 0 1
chr4:141233840|141234027 hsa-miR-651-3p 0 0 1
chr4:141233840|141234027 hsa-miR-920 1 0 1
chr4:141233840|141234027 hsa-miR-939-5p 0 0 1
chr4:141233840|141234027 hsa-miR-939-3p 0 0 1
chr4:141233840|141234027 hsa-miR-1178-5p 0 0 1
chr4:141233840|141234027 hsa-miR-1178-3p 0 0 1
chr4:141233840|141234027 hsa-miR-1255a 1 1 1
chr4:141233840|141234027 hsa-miR-1272 0 1 1
chr4:141233840|141234027 hsa-miR-146b-5p 0 0 1
chr4:141233840|141234027 hsa-miR-1255b 0 0 1
chr4:141233840|141234027 hsa-miR-658 1 0 0
chr4:141233840|141234027 hsa-miR-765 1 1 0
chr4:141233840|141234027 hsa-miR-760 1 0 0
chr4:141233840|141234027 hsa-miR-936 1 0 0
chr4:141233840|141234027 hsa-miR-3125 1 1 0
chr4:141233840|141234027 hsa-miR-3154 1 0 0
chr4:141233840|141234027 hsa-miR-3185 1 0 0
chr4:141233840|141234027 hsa-miR-4271 1 0 0
chr4:141233840|141234027 hsa-miR-3916 1 1 0
chr4:141233840|141234027 hsa-miR-4468 1 0 0
chr4:141233840|141234027 hsa-miR-4476 1 1 0
chr4:141233840|141234027 hsa-miR-2392 1 1 0
chr4:141233840|141234027 hsa-miR-4510 1 0 0
chr4:141233840|141234027 hsa-miR-4656 1 0 0
chr4:141233840|141234027 hsa-miR-4658 1 1 0
chr4:141233840|141234027 hsa-miR-4660 1 0 0
chr4:141233840|141234027 hsa-miR-4675 1 0 0
chr4:141233840|141234027 hsa-miR-4689 1 0 0
chr4:141233840|141234027 hsa-miR-4739 1 0 0
chr4:141233840|141234027 hsa-miR-5191 1 0 0
chr4:141233840|141234027 hsa-miR-5698 1 0 0
chr4:141233840|141234027 hsa-miR-6088 1 0 0
chr4:141233840|141234027 hsa-miR-6090 1 0 0
chr4:141233840|141234027 hsa-miR-6127 1 0 0
chr4:141233840|141234027 hsa-miR-6133 1 0 0
chr4:141233840|141234027 hsa-miR-6165 1 0 0
chr4:141233840|141234027 hsa-miR-8060 1 1 0
chr4:141233840|141234027 hsa-miR-127-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6765-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6894-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6510-5p 1 1 0
chr4:141233840|141234027 hsa-miR-766-5p 1 0 0
chr4:141233840|141234027 hsa-miR-1236-5p 1 0 0
chr4:141233840|141234027 hsa-miR-5187-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6807-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6873-5p 1 0 0
chr4:141233840|141234027 hsa-miR-7847-3p 1 0 0
chr4:141233840|141234027 hsa-miR-4695-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6867-5p 0 1 0
chr4:141233840|141234027 hsa-miR-6744-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6746-5p 1 0 0
chr4:141233840|141234027 hsa-miR-4709-3p 1 1 0
chr4:141233840|141234027 hsa-miR-6730-5p 1 0 0
chr4:141233840|141234027 hsa-miR-3928-3p 0 1 0
chr4:141233840|141234027 hsa-miR-3682-3p 1 0 0
chr4:141233840|141234027 hsa-miR-7845-5p 1 0 0
chr4:141233840|141234027 hsa-miR-3605-5p 1 1 0
chr4:141233840|141234027 hsa-miR-6829-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6827-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6760-5p 1 1 0
chr4:141233840|141234027 hsa-miR-2467-3p 1 1 0
chr4:141233840|141234027 hsa-miR-6888-5p 1 0 0
chr4:141233840|141234027 hsa-miR-1226-5p 1 0 0
chr4:141233840|141234027 hsa-miR-1229-5p 1 0 0
chr4:141233840|141234027 hsa-miR-3691-5p 1 0 0
chr4:141233840|141234027 hsa-miR-885-3p 1 0 0
chr4:141233840|141234027 hsa-miR-877-5p 1 0 0
chr4:141233840|141234027 hsa-miR-4732-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6847-5p 1 1 0
chr4:141233840|141234027 hsa-miR-3925-5p 0 1 0
chr4:141233840|141234027 hsa-miR-6878-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6877-5p 1 0 0
chr4:141233840|141234027 hsa-miR-7846-3p 1 0 0
chr4:141233840|141234027 hsa-miR-1225-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6818-5p 0 1 0
chr4:141233840|141234027 hsa-miR-605-3p 1 1 0
chr4:141233840|141234027 hsa-miR-5197-3p 1 0 0
chr4:141233840|141234027 hsa-miR-541-5p 0 1 0
chr4:141233840|141234027 hsa-miR-449c-3p 0 1 0
chr4:141233840|141234027 hsa-miR-4677-3p 0 1 0
chr4:141233840|141234027 hsa-miR-6769b-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6778-5p 0 1 0
chr4:141233840|141234027 hsa-miR-1343-5p 1 1 0
chr4:141233840|141234027 hsa-miR-6726-5p 1 0 0
chr4:141233840|141234027 hsa-miR-11181-3p 1 0 0
chr4:141233840|141234027 hsa-miR-6722-3p 1 0 0
chr4:141233840|141234027 hsa-miR-6788-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6797-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6808-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6875-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6780b-5p 1 0 0
chr4:141233840|141234027 hsa-miR-1909-3p 1 0 0
chr4:141233840|141234027 hsa-miR-328-5p 1 0 0
chr4:141233840|141234027 hsa-miR-4632-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6735-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6738-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6846-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6848-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6858-5p 1 0 0
chr4:141233840|141234027 hsa-miR-4723-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6831-5p 0 1 0
chr4:141233840|141234027 hsa-miR-1910-3p 1 1 0
chr4:141233840|141234027 hsa-miR-6511a-5p 1 1 0
chr4:141233840|141234027 hsa-miR-6511b-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6856-5p 1 1 0
chr4:141233840|141234027 hsa-miR-3173-3p 1 0 0
chr4:141233840|141234027 hsa-miR-3679-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6876-5p 1 1 0
chr4:141233840|141234027 hsa-miR-6891-5p 1 0 0
chr4:141233840|141234027 hsa-miR-6750-5p 1 1 0
chr4:141233840|141234027 hsa-miR-6790-5p 1 0 0
chr4:141233840|141234027 hsa-miR-5591-5p 0 1 0
chr4:141233840|141234027 hsa-miR-6859-5p 1 1 0
chr4:141233840|141234027 hsa-miR-6884-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:141233840|141234027
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MMTQYLNPFCLHLLPLHHPLLHTHP
Nucleotide Sequence CTGATGACTCAGTATCTGAATCCTTTCTGCCTTCATCTTCTTCCTCTTCATCATCCTCTGCTTCATACTCATCCT
CircID chr4:141233840|141234027
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence LLLSHTATRAAPLVLLFLIVSIATSIGPS
Nucleotide Sequence CTGCTCCTCTCACACACGGCCACCAGAGCAGCTCCCCTAGTTCTCTTGTTCCTCATAGTGAGCATAGCCACTAGCATAGGTCCTTCCTAA
CircID chr4:141233840|141234027
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MSMKQRMMKRKKMKAERIQILSHQICLLI
Nucleotide Sequence ATGAGTATGAAGCAGAGGATGATGAAGAGGAAGAAGATGAAGGCAGAAAGGATTCAGATACTGAGTCATCAGATTTGTTTACTAATTTGA
CircID chr4:141233840|141234027
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MLVAMLTMRNKRTRGAALVAVCERSR
Nucleotide Sequence ATGCTAGTGGCTATGCTCACTATGAGGAACAAGAGAACTAGGGGAGCTGCTCTGGTGGCCGTGTGTGAGAGGAGCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab