CircRNA Information

General Information
circRNA Basic Information
CircID chr4:141716450|141716592
Strand +
CircType exon
Host Gene ENSG00000164136.15;
Algorism CIRI2;
Sequence CCCTGTGCAAAGTCTCTGCCTGTGCCCCAAATAAGTCAGCATCATCTTTTGAAATCAAAGTGGAGGAAGCCATGCCCCCTCAGCTCTTGTATTCTGTGAGACTGCAGGCTTAACACTACATGAATTTCACCAAGGCTTACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:141716450|141716592 hsa-miR-381-5p 0 0 1
chr4:141716450|141716592 hsa-miR-381-3p 0 0 1
chr4:141716450|141716592 hsa-miR-135b-5p 0 0 1
chr4:141716450|141716592 hsa-miR-135b-3p 0 0 1
chr4:141716450|141716592 hsa-miR-335-5p 0 0 1
chr4:141716450|141716592 hsa-miR-335-3p 0 0 1
chr4:141716450|141716592 hsa-miR-507 0 0 1
chr4:141716450|141716592 hsa-miR-557 0 0 1
chr4:141716450|141716592 hsa-miR-596 0 0 1
chr4:141716450|141716592 hsa-miR-607 0 0 1
chr4:141716450|141716592 hsa-miR-300 0 0 1
chr4:141716450|141716592 hsa-miR-1322 0 0 1
chr4:141716450|141716592 hsa-miR-486-3p 1 0 1
chr4:141716450|141716592 hsa-miR-423-5p 0 0 1
chr4:141716450|141716592 hsa-miR-628-5p 0 0 1
chr4:141716450|141716592 hsa-miR-342-3p 0 0 1
chr4:141716450|141716592 hsa-miR-516a-3p 0 0 1
chr4:141716450|141716592 hsa-miR-142-3p 0 0 1
chr4:141716450|141716592 hsa-miR-220c 0 0 1
chr4:141716450|141716592 hsa-miR-135a 0 0 1
chr4:141716450|141716592 hsa-miR-564 1 0 0
chr4:141716450|141716592 hsa-miR-600 1 0 0
chr4:141716450|141716592 hsa-miR-3132 1 0 0
chr4:141716450|141716592 hsa-miR-3135a 1 0 0
chr4:141716450|141716592 hsa-miR-3170 1 0 0
chr4:141716450|141716592 hsa-miR-3197 1 0 0
chr4:141716450|141716592 hsa-miR-4260 1 0 0
chr4:141716450|141716592 hsa-miR-3937 1 0 0
chr4:141716450|141716592 hsa-miR-3945 1 0 0
chr4:141716450|141716592 hsa-miR-4437 1 0 0
chr4:141716450|141716592 hsa-miR-4488 1 0 0
chr4:141716450|141716592 hsa-miR-4514 1 0 0
chr4:141716450|141716592 hsa-miR-4647 1 0 0
chr4:141716450|141716592 hsa-miR-4673 1 0 0
chr4:141716450|141716592 hsa-miR-5572 1 0 0
chr4:141716450|141716592 hsa-miR-6088 1 0 0
chr4:141716450|141716592 hsa-miR-9718 1 0 0
chr4:141716450|141716592 hsa-miR-150-3p 1 0 0
chr4:141716450|141716592 hsa-miR-3622a-5p 1 0 0
chr4:141716450|141716592 hsa-miR-1227-5p 1 0 0
chr4:141716450|141716592 hsa-miR-6890-5p 1 0 0
chr4:141716450|141716592 hsa-miR-6727-5p 1 0 0
chr4:141716450|141716592 hsa-miR-6721-5p 1 0 0
chr4:141716450|141716592 hsa-miR-3151-5p 1 0 0
chr4:141716450|141716592 hsa-miR-3180-3p 1 0 0
chr4:141716450|141716592 hsa-miR-6798-5p 1 0 0
chr4:141716450|141716592 hsa-miR-2467-3p 1 0 0
chr4:141716450|141716592 hsa-miR-6888-5p 1 0 0
chr4:141716450|141716592 hsa-miR-7112-5p 1 0 0
chr4:141716450|141716592 hsa-miR-6499-5p 1 0 0
chr4:141716450|141716592 hsa-miR-6767-5p 1 0 0
chr4:141716450|141716592 hsa-miR-4763-3p 1 0 0
chr4:141716450|141716592 hsa-miR-6775-5p 1 0 0
chr4:141716450|141716592 hsa-miR-3180 1 0 0
chr4:141716450|141716592 hsa-miR-6743-5p 1 0 0
chr4:141716450|141716592 hsa-miR-328-5p 1 0 0
chr4:141716450|141716592 hsa-miR-4685-5p 1 0 0
chr4:141716450|141716592 hsa-miR-6735-5p 1 0 0
chr4:141716450|141716592 hsa-miR-4697-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:141716450|141716592
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MPVPQISQHHLLKSKWRKPCPLSSCIL
Nucleotide Sequence CTGCCTGTGCCCCAAATAAGTCAGCATCATCTTTTGAAATCAAAGTGGAGGAAGCCATGCCCCCTCAGCTCTTGTATTCTGTGA
CircID chr4:141716450|141716592
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence LCKVSACAPNKSASSFEIKVEEAMPPQLLYSVRLQA
Nucleotide Sequence CTGTGCAAAGTCTCTGCCTGTGCCCCAAATAAGTCAGCATCATCTTTTGAAATCAAAGTGGAGGAAGCCATGCCCCCTCAGCTCTTGTATTCTGTGAGACTGCAGGCTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab