CircRNA Information

General Information
circRNA Basic Information
CircID chr4:147617447|147617578
Strand +
CircType exon
Host Gene ENSG00000164168.6;
Algorism CIRI2;
Sequence CCTGCACACTCCGGTTCTGTCTCGCAGCTGCCTGCCCACTCGCTCTTTTCTTTGGGGATCGAGCTTCCTACCTCCCGCACTGGCAGGCGTCTCTTCAGTCGATTCCGCTAGTAGGTAAGGCCCCAGGATCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:147617447|147617578 hsa-let-7b-5p 0 0 1
chr4:147617447|147617578 hsa-let-7b-3p 0 0 1
chr4:147617447|147617578 hsa-let-7c-5p 0 0 1
chr4:147617447|147617578 hsa-let-7c-3p 0 0 1
chr4:147617447|147617578 hsa-let-7d-5p 0 0 1
chr4:147617447|147617578 hsa-let-7d-3p 0 0 1
chr4:147617447|147617578 hsa-let-7e-5p 0 0 1
chr4:147617447|147617578 hsa-let-7e-3p 0 0 1
chr4:147617447|147617578 hsa-miR-98-5p 0 0 1
chr4:147617447|147617578 hsa-miR-98-3p 0 0 1
chr4:147617447|147617578 hsa-let-7g-5p 0 0 1
chr4:147617447|147617578 hsa-let-7g-3p 0 0 1
chr4:147617447|147617578 hsa-let-7i-5p 0 0 1
chr4:147617447|147617578 hsa-let-7i-3p 0 0 1
chr4:147617447|147617578 hsa-miR-122-5p 0 0 1
chr4:147617447|147617578 hsa-miR-122-3p 0 0 1
chr4:147617447|147617578 hsa-miR-648 0 1 1
chr4:147617447|147617578 hsa-miR-1276 0 0 1
chr4:147617447|147617578 hsa-miR-1825 0 0 1
chr4:147617447|147617578 hsa-miR-139-3p 1 0 1
chr4:147617447|147617578 hsa-miR-574-5p 0 0 1
chr4:147617447|147617578 hsa-let-7a 0 0 1
chr4:147617447|147617578 hsa-let-7f 0 0 1
chr4:147617447|147617578 hsa-miR-614 1 0 0
chr4:147617447|147617578 hsa-miR-3141 1 0 0
chr4:147617447|147617578 hsa-miR-3147 1 0 0
chr4:147617447|147617578 hsa-miR-3665 1 0 0
chr4:147617447|147617578 hsa-miR-3937 1 0 0
chr4:147617447|147617578 hsa-miR-4481 1 1 0
chr4:147617447|147617578 hsa-miR-4673 1 0 0
chr4:147617447|147617578 hsa-miR-4692 0 1 0
chr4:147617447|147617578 hsa-miR-4739 1 0 0
chr4:147617447|147617578 hsa-miR-6068 1 0 0
chr4:147617447|147617578 hsa-miR-6127 1 0 0
chr4:147617447|147617578 hsa-miR-6860 1 0 0
chr4:147617447|147617578 hsa-miR-8085 1 0 0
chr4:147617447|147617578 hsa-miR-4731-5p 1 0 0
chr4:147617447|147617578 hsa-miR-4708-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6799-5p 0 1 0
chr4:147617447|147617578 hsa-miR-4695-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6820-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6806-5p 1 0 0
chr4:147617447|147617578 hsa-miR-7845-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6760-5p 1 0 0
chr4:147617447|147617578 hsa-miR-5006-5p 1 1 0
chr4:147617447|147617578 hsa-miR-6850-5p 1 0 0
chr4:147617447|147617578 hsa-miR-1343-3p 0 1 0
chr4:147617447|147617578 hsa-miR-1229-5p 1 0 0
chr4:147617447|147617578 hsa-miR-1228-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6771-5p 1 0 0
chr4:147617447|147617578 hsa-miR-3162-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6802-5p 1 0 0
chr4:147617447|147617578 hsa-miR-7112-5p 1 0 0
chr4:147617447|147617578 hsa-miR-654-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6720-3p 1 0 0
chr4:147617447|147617578 hsa-miR-519d-5p 0 1 0
chr4:147617447|147617578 hsa-miR-4677-3p 1 0 0
chr4:147617447|147617578 hsa-miR-1207-5p 1 0 0
chr4:147617447|147617578 hsa-miR-1233-5p 1 0 0
chr4:147617447|147617578 hsa-miR-4763-3p 1 0 0
chr4:147617447|147617578 hsa-miR-6778-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6893-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6726-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6756-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6780a-5p 1 1 0
chr4:147617447|147617578 hsa-miR-6808-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6879-5p 1 0 0
chr4:147617447|147617578 hsa-miR-328-5p 1 0 0
chr4:147617447|147617578 hsa-miR-4632-5p 1 0 0
chr4:147617447|147617578 hsa-miR-4649-5p 1 0 0
chr4:147617447|147617578 hsa-miR-4726-5p 1 0 0
chr4:147617447|147617578 hsa-miR-4745-5p 1 1 0
chr4:147617447|147617578 hsa-miR-6729-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6858-5p 1 0 0
chr4:147617447|147617578 hsa-miR-4436b-3p 1 0 0
chr4:147617447|147617578 hsa-miR-6885-5p 1 0 0
chr4:147617447|147617578 hsa-miR-939-5p 1 0 0
chr4:147617447|147617578 hsa-miR-1238-5p 1 0 0
chr4:147617447|147617578 hsa-miR-4758-5p 1 0 0
chr4:147617447|147617578 hsa-miR-10394-3p 1 0 0
chr4:147617447|147617578 hsa-miR-6511a-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6511b-5p 1 1 0
chr4:147617447|147617578 hsa-miR-4747-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6849-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6791-5p 1 0 0
chr4:147617447|147617578 hsa-miR-6783-3p 0 1 0
chr4:147617447|147617578 hsa-miR-6817-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:147617447|147617578
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MPAHSLFSLGIELPTSRTGRRLFSRFR
Nucleotide Sequence CTGCCTGCCCACTCGCTCTTTTCTTTGGGGATCGAGCTTCCTACCTCCCGCACTGGCAGGCGTCTCTTCAGTCGATTCCGCTAG
CircID chr4:147617447|147617578
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence LHTPVLSRSCLPTRSFLWGSSFLPPALAGVSSVDSASR
Nucleotide Sequence CTGCACACTCCGGTTCTGTCTCGCAGCTGCCTGCCCACTCGCTCTTTTCTTTGGGGATCGAGCTTCCTACCTCCCGCACTGGCAGGCGTCTCTTCAGTCGATTCCGCTAGTAGGTAA
CircID chr4:147617447|147617578
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MGPYLLAESTEETPASAGGRKLDPQRKERVGRQLRDRTGVCR
Nucleotide Sequence CTGGGGCCTTACCTACTAGCGGAATCGACTGAAGAGACGCCTGCCAGTGCGGGAGGTAGGAAGCTCGATCCCCAAAGAAAAGAGCGAGTGGGCAGGCAGCTGCGAGACAGAACCGGAGTGTGCAGG
CircID chr4:147617447|147617578
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MKRRLPVREVGSSIPKEKSEWAGSCETEPECA
Nucleotide Sequence CTGAAGAGACGCCTGCCAGTGCGGGAGGTAGGAAGCTCGATCCCCAAAGAAAAGAGCGAGTGGGCAGGCAGCTGCGAGACAGAACCGGAGTGTGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab