CircRNA Information

General Information
circRNA Basic Information
CircID chr4:147965024|148047051
Strand +
CircType exon
Host Gene ENSG00000071205.11;
Algorism find_circ;CIRI2;DCC;
Sequence AAAGCGGCAGCCCAGAATCTCGTGTTAATGCGATCCATTTCTTGGTACACAAACTGCCAGAGAAGAATAAAGAGATGTTGGATATTTTGGTGAAACACTTAACAAATGTTTCAAATCACTCCAAGCAGAACCTGATGACTGTGGCAAACTTAGGAGTGGTGTTTGGACCAACTCTGATGAGGCCACAGGAAGAAACTGTCGCTGCCCTCATGGACTTGAAGTTTCAGAATATTGTTGTGGAAATCTTAATTGAAAACCATGAAAAGTTTAAATTTAATCAGAGATTTTATTTTGGAATCTTCTGTTAAAAAAATAAAAGGCTATGACCTCTTCCCTTCATTGGAAGGAATGGATTTTGGGCTCTAGCCTGTCTTGAATGAACTCCAAATCAAATGTTGTGGTGCTGGTTTACTGGAGTAACACACAGGTTTCTGTTCATGGTAAATAATTCCTGTCCTTTATGCTTTGTTGGAAGATTTTTCGGACGCCGCCCGATACTACATTCCCTGAGCCCACCTGCCTGTCAGCATCACCCCCAAATGCGCCACCAAGGCAGTCGAAGAGACAAGGCCAGAGAACCAAGAGGCCCGTGGCCGTCTACAATCTTTGTCTGGAGCTGGAAGATGGTGACAATCCTTACCCTTCCAAGGAGGACACCCCTACCAGCAGTCTGGACTCACTTTCCTCCCCGTCTCCCGTGACTACAGCTGTCCCTGGGCCTCCTGGACCAGACAAAAACCACCTTCTGGCAGATGGAGGGAGCTTTGGAGACTGGGCATCCACTAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:147965024|148047051
ORF Type ORF1
Protein Length 108
Nucleotide Length 324
Protein Sequence MLCWKIFRTPPDTTFPEPTCLSASPPNAPPRQSKRQGQRTKRPVAVYNLCLELEDGDNPYPSKEDTPTSSLDSLSSPSPVTTAVPGPPGPDKNHLLADGGSFGDWAST
Nucleotide Sequence ATGCTTTGTTGGAAGATTTTTCGGACGCCGCCCGATACTACATTCCCTGAGCCCACCTGCCTGTCAGCATCACCCCCAAATGCGCCACCAAGGCAGTCGAAGAGACAAGGCCAGAGAACCAAGAGGCCCGTGGCCGTCTACAATCTTTGTCTGGAGCTGGAAGATGGTGACAATCCTTACCCTTCCAAGGAGGACACCCCTACCAGCAGTCTGGACTCACTTTCCTCCCCGTCTCCCGTGACTACAGCTGTCCCTGGGCCTCCTGGACCAGACAAAAACCACCTTCTGGCAGATGGAGGGAGCTTTGGAGACTGGGCATCCACT
CircID chr4:147965024|148047051
ORF Type ORF2
Protein Length 103
Nucleotide Length 309
Protein Sequence MLWCWFTGVTHRFLFMVNNSCPLCFVGRFFGRRPILHSLSPPACQHHPQMRHQGSRRDKAREPRGPWPSTIFVWSWKMVTILTLPRRTPLPAVWTHFPPRLP*
Nucleotide Sequence ATGTTGTGGTGCTGGTTTACTGGAGTAACACACAGGTTTCTGTTCATGGTAAATAATTCCTGTCCTTTATGCTTTGTTGGAAGATTTTTCGGACGCCGCCCGATACTACATTCCCTGAGCCCACCTGCCTGTCAGCATCACCCCCAAATGCGCCACCAAGGCAGTCGAAGAGACAAGGCCAGAGAACCAAGAGGCCCGTGGCCGTCTACAATCTTTGTCTGGAGCTGGAAGATGGTGACAATCCTTACCCTTCCAAGGAGGACACCCCTACCAGCAGTCTGGACTCACTTTCCTCCCCGTCTCCCGTGA
CircID chr4:147965024|148047051
ORF Type ORF3
Protein Length 78
Nucleotide Length 234
Protein Sequence MLDILVKHLTNVSNHSKQNLMTVANLGVVFGPTLMRPQEETVAALMDLKFQNIVVEILIENHEKFKFNQRFYFGIFC*
Nucleotide Sequence ATGTTGGATATTTTGGTGAAACACTTAACAAATGTTTCAAATCACTCCAAGCAGAACCTGATGACTGTGGCAAACTTAGGAGTGGTGTTTGGACCAACTCTGATGAGGCCACAGGAAGAAACTGTCGCTGCCCTCATGGACTTGAAGTTTCAGAATATTGTTGTGGAAATCTTAATTGAAAACCATGAAAAGTTTAAATTTAATCAGAGATTTTATTTTGGAATCTTCTGTTAA
CircID chr4:147965024|148047051
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MKSLNLIRDFILESSVKKIKGYDLFPSLEGMDFGL*
Nucleotide Sequence ATGAAAAGTTTAAATTTAATCAGAGATTTTATTTTGGAATCTTCTGTTAAAAAAATAAAAGGCTATGACCTCTTCCCTTCATTGGAAGGAATGGATTTTGGGCTCTAG
CircID chr4:147965024|148047051
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MRAATVSSCGLIRVGPNTTPKFATVIRFCLE*
Nucleotide Sequence ATGAGGGCAGCGACAGTTTCTTCCTGTGGCCTCATCAGAGTTGGTCCAAACACCACTCCTAAGTTTGCCACAGTCATCAGGTTCTGCTTGGAGTGA
CircID chr4:147965024|148047051
ORF Type ORF6
Protein Length 54
Nucleotide Length 162
Protein Sequence VASSELVQTPLLSLPQSSGSAWSDLKHLLSVSPKYPTSLYSSLAVCVPRNGSH*
Nucleotide Sequence GTGGCCTCATCAGAGTTGGTCCAAACACCACTCCTAAGTTTGCCACAGTCATCAGGTTCTGCTTGGAGTGATTTGAAACATTTGTTAAGTGTTTCACCAAAATATCCAACATCTCTTTATTCTTCTCTGGCAGTTTGTGTACCAAGAAATGGATCGCATTAA
CircID chr4:147965024|148047051
ORF Type ORF7
Protein Length 52
Nucleotide Length 156
Protein Sequence QSLPFQGGHPYQQSGLTFLPVSRDYSCPWASWTRQKPPSGRWRELWRLGIHY
Nucleotide Sequence CAATCCTTACCCTTCCAAGGAGGACACCCCTACCAGCAGTCTGGACTCACTTTCCTCCCCGTCTCCCGTGACTACAGCTGTCCCTGGGCCTCCTGGACCAGACAAAAACCACCTTCTGGCAGATGGAGGGAGCTTTGGAGACTGGGCATCCACTAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr4:147965024|148047051 DGCR8 0 1 0
chr4:147965024|148047051 RBFOX2 1 0 0
chr4:147965024|148047051 NOP58 0 1 2
chr4:147965024|148047051 ELAVL3 1 0 0
chr4:147965024|148047051 HNRNPC 0 1 0
chr4:147965024|148047051 U2AF2 4 0 0
chr4:147965024|148047051 CSTF2T 0 0 2
chr4:147965024|148047051 DDX54 0 0 9
chr4:147965024|148047051 IGF2BP1 0 0 1
chr4:147965024|148047051 FMR1 0 1 1
chr4:147965024|148047051 PTBP1 1 0 0
chr4:147965024|148047051 IGF2BP2 0 0 3
chr4:147965024|148047051 AGO1 0 0 1
chr4:147965024|148047051 EIF4A3 2 1 7
chr4:147965024|148047051 FBL 1 1 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab