CircRNA Information

General Information
circRNA Basic Information
CircID chr4:151112299|151112513
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGTTGGGTCAATGGGGTCCTTACTTCACCTAAGTCTCCTAAATGATTGGGCCTGATTCACTGATGGCTCTGCAGAATGGAAAGCTGGTAGTATCCATTGTGTTGCTGTTGCAATCCAACCTCAGTGCTAGCCATGCAACTAAAGTGAATGAAGTCCCTGCTCAGTGGGCGGAACTCAGTTCTCATAGCCAATACTGCTTTTGATTAACCTTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:151112299|151112513 hsa-miR-146a-5p 0 0 1
chr4:151112299|151112513 hsa-miR-146a-3p 0 0 1
chr4:151112299|151112513 hsa-miR-587 0 0 1
chr4:151112299|151112513 hsa-miR-589-5p 0 0 1
chr4:151112299|151112513 hsa-miR-589-3p 0 0 1
chr4:151112299|151112513 hsa-miR-621 0 0 1
chr4:151112299|151112513 hsa-miR-634 0 0 1
chr4:151112299|151112513 hsa-miR-651-5p 0 0 1
chr4:151112299|151112513 hsa-miR-651-3p 0 0 1
chr4:151112299|151112513 hsa-miR-1298-5p 0 0 1
chr4:151112299|151112513 hsa-miR-1298-3p 0 0 1
chr4:151112299|151112513 hsa-miR-1205 0 0 1
chr4:151112299|151112513 hsa-miR-1184 0 0 1
chr4:151112299|151112513 hsa-miR-146b-5p 0 1 1
chr4:151112299|151112513 hsa-miR-544 0 0 1
chr4:151112299|151112513 hsa-miR-768-3p 0 0 1
chr4:151112299|151112513 hsa-miR-611 1 0 0
chr4:151112299|151112513 hsa-miR-612 1 1 0
chr4:151112299|151112513 hsa-miR-298 1 0 0
chr4:151112299|151112513 hsa-miR-718 0 1 0
chr4:151112299|151112513 hsa-miR-4289 1 0 0
chr4:151112299|151112513 hsa-miR-3972 1 0 0
chr4:151112299|151112513 hsa-miR-4682 0 1 0
chr4:151112299|151112513 hsa-miR-4689 1 0 0
chr4:151112299|151112513 hsa-miR-6086 0 1 0
chr4:151112299|151112513 hsa-miR-6132 1 0 0
chr4:151112299|151112513 hsa-miR-6860 1 0 0
chr4:151112299|151112513 hsa-miR-6721-5p 1 1 0
chr4:151112299|151112513 hsa-miR-181a-2-3p 0 1 0
chr4:151112299|151112513 hsa-miR-4697-3p 0 1 0
chr4:151112299|151112513 hsa-miR-6821-5p 1 0 0
chr4:151112299|151112513 hsa-miR-4690-5p 1 0 0
chr4:151112299|151112513 hsa-miR-4743-5p 1 0 0
chr4:151112299|151112513 hsa-miR-4446-3p 1 0 0
chr4:151112299|151112513 hsa-miR-6800-5p 0 1 0
chr4:151112299|151112513 hsa-miR-194-5p 0 1 0
chr4:151112299|151112513 hsa-miR-7162-3p 0 1 0
chr4:151112299|151112513 hsa-miR-6499-3p 1 0 0
chr4:151112299|151112513 hsa-miR-24-2-5p 0 1 0
chr4:151112299|151112513 hsa-miR-24-1-5p 1 1 0
chr4:151112299|151112513 hsa-miR-744-5p 1 0 0
chr4:151112299|151112513 hsa-miR-6857-3p 0 1 0
chr4:151112299|151112513 hsa-miR-15a-5p 0 1 0
chr4:151112299|151112513 hsa-miR-5011-3p 0 1 0
chr4:151112299|151112513 hsa-miR-1207-5p 1 0 0
chr4:151112299|151112513 hsa-miR-4763-3p 1 0 0
chr4:151112299|151112513 hsa-miR-6754-5p 1 0 0
chr4:151112299|151112513 hsa-miR-7155-3p 1 0 0
chr4:151112299|151112513 hsa-miR-7153-5p 0 1 0
chr4:151112299|151112513 hsa-miR-195-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:151112299|151112513
ORF Type ORF1
Protein Length 53
Nucleotide Length 162
Protein Sequence MIGPDSLMALQNGKLVVSIVLLLQSNLSASHATKVNEVPAQWAELSSHSQYCF
Nucleotide Sequence ATGATTGGGCCTGATTCACTGATGGCTCTGCAGAATGGAAAGCTGGTAGTATCCATTGTGTTGCTGTTGCAATCCAACCTCAGTGCTAGCCATGCAACTAAAGTGAATGAAGTCCCTGCTCAGTGGGCGGAACTCAGTTCTCATAGCCAATACTGCTTTTGA
CircID chr4:151112299|151112513
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MRLDCNSNTMDTTSFPFCRAISESGPII
Nucleotide Sequence CTGAGGTTGGATTGCAACAGCAACACAATGGATACTACCAGCTTTCCATTCTGCAGAGCCATCAGTGAATCAGGCCCAATCATTTAG
CircID chr4:151112299|151112513
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MAMRTEFRPLSRDFIHFSCMASTEVGLQQQHNGYYQLSILQSHQ
Nucleotide Sequence TTGGCTATGAGAACTGAGTTCCGCCCACTGAGCAGGGACTTCATTCACTTTAGTTGCATGGCTAGCACTGAGGTTGGATTGCAACAGCAACACAATGGATACTACCAGCTTTCCATTCTGCAGAGCCATCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab