CircRNA Information

General Information
circRNA Basic Information
CircID chr4:152332596|152337936
Strand -
CircType exon
Host Gene ENSG00000109670.13;
Algorism find_circ;CIRI2;DCC;
Sequence AGCTGGAGTGGACCAGAGAAATTGCTTGCTTTAGATGAACTCATTGATAGTTGTGAACCAACACAAGTAAAACATATGATGCAAGTGATAGAACCCCAGTTTCAACGAGACTTCATTTCATTGCTCCCTAAAGAGGTTATAGAGAAAAATAAAAGCAATTCTTACAGAGTTGGACAAGGAAAAGTTGGCACTCTATGTGCTTTCATTCCTGGAACCCAAAGACCTGCTACAAGCAGCTCAGACATGTCGCTACTGGAGAATTTTGGCTGAAGACAACCTTCTCTGGAGAGAGAAATGCAAAGAAGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:152332596|152337936 hsa-miR-95-5p 0 0 1
chr4:152332596|152337936 hsa-miR-95-3p 0 0 1
chr4:152332596|152337936 hsa-miR-96-5p 0 0 1
chr4:152332596|152337936 hsa-miR-96-3p 0 0 1
chr4:152332596|152337936 hsa-miR-221-5p 0 0 1
chr4:152332596|152337936 hsa-miR-221-3p 0 0 1
chr4:152332596|152337936 hsa-miR-222-5p 0 0 1
chr4:152332596|152337936 hsa-miR-222-3p 0 0 1
chr4:152332596|152337936 hsa-miR-122-5p 0 0 1
chr4:152332596|152337936 hsa-miR-122-3p 0 0 1
chr4:152332596|152337936 hsa-miR-185-5p 0 0 1
chr4:152332596|152337936 hsa-miR-185-3p 0 0 1
chr4:152332596|152337936 hsa-miR-326 0 0 1
chr4:152332596|152337936 hsa-miR-527 0 0 1
chr4:152332596|152337936 hsa-miR-539-5p 0 0 1
chr4:152332596|152337936 hsa-miR-539-3p 0 0 1
chr4:152332596|152337936 hsa-miR-571 0 1 1
chr4:152332596|152337936 hsa-miR-579-5p 0 0 1
chr4:152332596|152337936 hsa-miR-579-3p 0 0 1
chr4:152332596|152337936 hsa-miR-583 0 0 1
chr4:152332596|152337936 hsa-miR-636 0 0 1
chr4:152332596|152337936 hsa-miR-646 0 0 1
chr4:152332596|152337936 hsa-miR-647 0 0 1
chr4:152332596|152337936 hsa-miR-1271-5p 0 0 1
chr4:152332596|152337936 hsa-miR-1271-3p 0 0 1
chr4:152332596|152337936 hsa-miR-1298-5p 0 0 1
chr4:152332596|152337936 hsa-miR-1298-3p 0 0 1
chr4:152332596|152337936 hsa-miR-942-5p 0 0 1
chr4:152332596|152337936 hsa-miR-942-3p 0 0 1
chr4:152332596|152337936 hsa-miR-1305 0 0 1
chr4:152332596|152337936 hsa-miR-1243 0 0 1
chr4:152332596|152337936 hsa-miR-1272 0 0 1
chr4:152332596|152337936 hsa-miR-1276 0 0 1
chr4:152332596|152337936 hsa-miR-302f 0 0 1
chr4:152332596|152337936 hsa-miR-1322 0 0 1
chr4:152332596|152337936 hsa-miR-1324 0 0 1
chr4:152332596|152337936 hsa-miR-455-5p 0 0 1
chr4:152332596|152337936 hsa-miR-330-5p 0 0 1
chr4:152332596|152337936 hsa-miR-518a-5p 0 0 1
chr4:152332596|152337936 hsa-miR-218 0 0 1
chr4:152332596|152337936 hsa-miR-516b 0 0 1
chr4:152332596|152337936 hsa-miR-3175 0 1 0
chr4:152332596|152337936 hsa-miR-4306 0 1 0
chr4:152332596|152337936 hsa-miR-3135b 0 1 0
chr4:152332596|152337936 hsa-miR-4644 1 1 0
chr4:152332596|152337936 hsa-miR-5688 0 1 0
chr4:152332596|152337936 hsa-miR-8085 1 1 0
chr4:152332596|152337936 hsa-miR-12128 1 0 0
chr4:152332596|152337936 hsa-miR-6854-5p 0 1 0
chr4:152332596|152337936 hsa-miR-4709-3p 0 1 0
chr4:152332596|152337936 hsa-miR-197-5p 1 0 0
chr4:152332596|152337936 hsa-miR-6514-5p 1 0 0
chr4:152332596|152337936 hsa-miR-1343-3p 1 0 0
chr4:152332596|152337936 hsa-miR-4640-5p 1 0 0
chr4:152332596|152337936 hsa-miR-516b-5p 0 1 0
chr4:152332596|152337936 hsa-miR-5584-5p 0 1 0
chr4:152332596|152337936 hsa-miR-4800-5p 0 1 0
chr4:152332596|152337936 hsa-miR-7106-3p 0 1 0
chr4:152332596|152337936 hsa-miR-5000-5p 0 1 0
chr4:152332596|152337936 hsa-miR-518c-5p 0 1 0
chr4:152332596|152337936 hsa-miR-514a-5p 0 1 0
chr4:152332596|152337936 hsa-miR-556-5p 0 1 0
chr4:152332596|152337936 hsa-miR-6797-5p 1 1 0
chr4:152332596|152337936 hsa-miR-6715b-5p 1 0 0
chr4:152332596|152337936 hsa-miR-3617-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:152332596|152337936
ORF Type ORF1
Protein Length 79
Nucleotide Length 237
Protein Sequence MLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE
Nucleotide Sequence TTGCTTGCTTTAGATGAACTCATTGATAGTTGTGAACCAACACAAGTAAAACATATGATGCAAGTGATAGAACCCCAGTTTCAACGAGACTTCATTTCATTGCTCCCTAAAGAGTTGGCACTCTATGTGCTTTCATTCCTGGAACCCAAAGACCTGCTACAAGCAGCTCAGACATGTCGCTACTGGAGAATTTTGGCTGAAGACAACCTTCTCTGGAGAGAGAAATGCAAAGAAGAG
CircID chr4:152332596|152337936
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MCFHSWNPKTCYKQLRHVATGEFWLKTTFSGERNAKKR
Nucleotide Sequence ATGTGCTTTCATTCCTGGAACCCAAAGACCTGCTACAAGCAGCTCAGACATGTCGCTACTGGAGAATTTTGGCTGAAGACAACCTTCTCTGGAGAGAGAAATGCAAAGAAGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr4:152332596|152337936 U2AF2 7 7 0
chr4:152332596|152337936 ELAVL1 5 1 1
chr4:152332596|152337936 ELAVL3 1 0 0
chr4:152332596|152337936 PRPF8 0 2 0
chr4:152332596|152337936 UPF1 1 0 0
chr4:152332596|152337936 TAF15 0 1 0
chr4:152332596|152337936 FUS 3 1 0
chr4:152332596|152337936 SRSF1 1 0 0
chr4:152332596|152337936 NOP58 1 1 0
chr4:152332596|152337936 NOP56 2 1 1
chr4:152332596|152337936 DDX54 0 0 3
chr4:152332596|152337936 HNRNPL 0 2 0
chr4:152332596|152337936 PTBP1 3 2 0
chr4:152332596|152337936 HNRNPC 0 4 0
chr4:152332596|152337936 TRA2A 0 1 1
chr4:152332596|152337936 HNRNPA1 1 1 0
chr4:152332596|152337936 ACIN1 0 0 1
chr4:152332596|152337936 IGF2BP2 0 0 3
chr4:152332596|152337936 TARDBP 1 2 0
chr4:152332596|152337936 BUD13 0 0 1
chr4:152332596|152337936 RBM47 1 0 0
chr4:152332596|152337936 CSTF2T 1 0 0
chr4:152332596|152337936 AIFM1 0 0 1
chr4:152332596|152337936 AGO1 1 0 0
chr4:152332596|152337936 EIF4A3 3 4 5
chr4:152332596|152337936 FBL 2 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab