CircRNA Information

General Information
circRNA Basic Information
CircID chr4:154586441|154586699
Strand -
CircType exon
Host Gene ENSG00000171560.13;
Algorism CIRI2;
Sequence TTCCAGGTCCAGAGCTCCCAGGTTTCCAGGTTGCAGTCCCTCCAGTCCCAGAGCTCCCAGGGTTTCGGTTTCCAGTACTTCCAGGTCCAGAGCTCCCAGAGTTCCAGCTTCCAGCACTGCTAGGGTTCCTGGGGCTTTCCGTCTCTGATCCGGTTCCATAAGAGGTGGAGCCTCCTCGAGTAATCTCATTTCCACCAGGTCTCTCTAACTCCATTCTCATCTGCGGCATGTCTGTTAATGCCTTCCACTCTGGGGGTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:154586441|154586699 hsa-miR-383-5p 0 0 1
chr4:154586441|154586699 hsa-miR-383-3p 0 0 1
chr4:154586441|154586699 hsa-miR-326 0 0 1
chr4:154586441|154586699 hsa-miR-422a 0 0 1
chr4:154586441|154586699 hsa-miR-492 0 0 1
chr4:154586441|154586699 hsa-miR-580-5p 0 0 1
chr4:154586441|154586699 hsa-miR-580-3p 0 0 1
chr4:154586441|154586699 hsa-miR-611 0 0 1
chr4:154586441|154586699 hsa-miR-619-5p 0 0 1
chr4:154586441|154586699 hsa-miR-619-3p 0 0 1
chr4:154586441|154586699 hsa-miR-631 0 0 1
chr4:154586441|154586699 hsa-miR-873-5p 0 0 1
chr4:154586441|154586699 hsa-miR-873-3p 0 0 1
chr4:154586441|154586699 hsa-miR-920 0 1 1
chr4:154586441|154586699 hsa-miR-1287-5p 0 0 1
chr4:154586441|154586699 hsa-miR-1287-3p 0 0 1
chr4:154586441|154586699 hsa-miR-1303 0 0 1
chr4:154586441|154586699 hsa-miR-1243 0 0 1
chr4:154586441|154586699 hsa-miR-1278 0 0 1
chr4:154586441|154586699 hsa-miR-1288-5p 0 0 1
chr4:154586441|154586699 hsa-miR-1288-3p 0 0 1
chr4:154586441|154586699 hsa-miR-671-5p 1 1 1
chr4:154586441|154586699 hsa-miR-769-5p 1 1 1
chr4:154586441|154586699 hsa-miR-512-3p 0 0 1
chr4:154586441|154586699 hsa-miR-490-3p 0 1 1
chr4:154586441|154586699 hsa-miR-361-3p 0 0 1
chr4:154586441|154586699 hsa-miR-875-3p 0 1 1
chr4:154586441|154586699 hsa-miR-330-5p 0 1 1
chr4:154586441|154586699 hsa-miR-151-5p 0 0 1
chr4:154586441|154586699 hsa-miR-378 0 0 1
chr4:154586441|154586699 hsa-miR-449a 1 0 0
chr4:154586441|154586699 hsa-miR-637 1 1 0
chr4:154586441|154586699 hsa-miR-661 1 1 0
chr4:154586441|154586699 hsa-miR-663a 1 0 0
chr4:154586441|154586699 hsa-miR-762 1 0 0
chr4:154586441|154586699 hsa-miR-760 1 1 0
chr4:154586441|154586699 hsa-miR-1183 1 0 0
chr4:154586441|154586699 hsa-miR-1295a 1 0 0
chr4:154586441|154586699 hsa-miR-1299 0 1 0
chr4:154586441|154586699 hsa-miR-2861 1 0 0
chr4:154586441|154586699 hsa-miR-378b 1 1 0
chr4:154586441|154586699 hsa-miR-378c 0 1 0
chr4:154586441|154586699 hsa-miR-4298 1 0 0
chr4:154586441|154586699 hsa-miR-4300 0 1 0
chr4:154586441|154586699 hsa-miR-4314 0 1 0
chr4:154586441|154586699 hsa-miR-4254 0 1 0
chr4:154586441|154586699 hsa-miR-3661 1 1 0
chr4:154586441|154586699 hsa-miR-1268b 1 0 0
chr4:154586441|154586699 hsa-miR-378e 1 1 0
chr4:154586441|154586699 hsa-miR-378f 0 1 0
chr4:154586441|154586699 hsa-miR-3135b 1 1 0
chr4:154586441|154586699 hsa-miR-4496 0 1 0
chr4:154586441|154586699 hsa-miR-4498 1 0 0
chr4:154586441|154586699 hsa-miR-2392 1 0 0
chr4:154586441|154586699 hsa-miR-4515 1 1 0
chr4:154586441|154586699 hsa-miR-4535 1 1 0
chr4:154586441|154586699 hsa-miR-1587 1 0 0
chr4:154586441|154586699 hsa-miR-4648 1 0 0
chr4:154586441|154586699 hsa-miR-4657 1 0 0
chr4:154586441|154586699 hsa-miR-4658 1 0 0
chr4:154586441|154586699 hsa-miR-4688 1 0 0
chr4:154586441|154586699 hsa-miR-5093 0 1 0
chr4:154586441|154586699 hsa-miR-5192 1 0 0
chr4:154586441|154586699 hsa-miR-6079 0 1 0
chr4:154586441|154586699 hsa-miR-6085 1 0 0
chr4:154586441|154586699 hsa-miR-6090 1 0 0
chr4:154586441|154586699 hsa-miR-6127 1 0 0
chr4:154586441|154586699 hsa-miR-8052 1 1 0
chr4:154586441|154586699 hsa-miR-8089 1 0 0
chr4:154586441|154586699 hsa-miR-12115 1 0 0
chr4:154586441|154586699 hsa-miR-12122 1 0 0
chr4:154586441|154586699 hsa-miR-6840-3p 0 1 0
chr4:154586441|154586699 hsa-miR-1247-3p 0 1 0
chr4:154586441|154586699 hsa-miR-6894-5p 1 0 0
chr4:154586441|154586699 hsa-miR-125a-3p 1 0 0
chr4:154586441|154586699 hsa-miR-7851-3p 1 1 0
chr4:154586441|154586699 hsa-miR-5187-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6515-5p 0 1 0
chr4:154586441|154586699 hsa-miR-6089 1 0 0
chr4:154586441|154586699 hsa-miR-3192-5p 1 1 0
chr4:154586441|154586699 hsa-miR-6744-5p 1 0 0
chr4:154586441|154586699 hsa-miR-4653-3p 1 1 0
chr4:154586441|154586699 hsa-miR-4722-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6840-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6741-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6716-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6871-5p 0 1 0
chr4:154586441|154586699 hsa-miR-3190-3p 1 1 0
chr4:154586441|154586699 hsa-miR-6827-5p 1 0 0
chr4:154586441|154586699 hsa-miR-3126-5p 1 1 0
chr4:154586441|154586699 hsa-miR-6760-5p 1 1 0
chr4:154586441|154586699 hsa-miR-6852-5p 1 0 0
chr4:154586441|154586699 hsa-miR-5088-5p 0 1 0
chr4:154586441|154586699 hsa-miR-7109-5p 1 0 0
chr4:154586441|154586699 hsa-miR-1226-5p 1 0 0
chr4:154586441|154586699 hsa-miR-4738-3p 1 1 0
chr4:154586441|154586699 hsa-miR-4786-3p 1 0 0
chr4:154586441|154586699 hsa-miR-4640-5p 1 0 0
chr4:154586441|154586699 hsa-miR-652-5p 0 1 0
chr4:154586441|154586699 hsa-miR-6749-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6834-5p 1 1 0
chr4:154586441|154586699 hsa-miR-149-3p 1 0 0
chr4:154586441|154586699 hsa-miR-7156-3p 1 0 0
chr4:154586441|154586699 hsa-miR-6886-5p 1 1 0
chr4:154586441|154586699 hsa-miR-6892-5p 1 0 0
chr4:154586441|154586699 hsa-miR-887-5p 0 1 0
chr4:154586441|154586699 hsa-miR-4772-3p 0 1 0
chr4:154586441|154586699 hsa-miR-518c-5p 0 1 0
chr4:154586441|154586699 hsa-miR-4680-5p 0 1 0
chr4:154586441|154586699 hsa-miR-6812-5p 1 0 0
chr4:154586441|154586699 hsa-miR-5001-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6726-5p 1 1 0
chr4:154586441|154586699 hsa-miR-6803-5p 1 0 0
chr4:154586441|154586699 hsa-miR-7107-5p 1 0 0
chr4:154586441|154586699 hsa-miR-1249-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6779-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6780a-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6797-5p 1 1 0
chr4:154586441|154586699 hsa-miR-3620-5p 1 0 0
chr4:154586441|154586699 hsa-miR-10396b-5p 1 0 0
chr4:154586441|154586699 hsa-miR-1909-3p 1 0 0
chr4:154586441|154586699 hsa-miR-6794-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6795-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6846-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6848-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6887-5p 1 0 0
chr4:154586441|154586699 hsa-miR-6889-5p 1 0 0
chr4:154586441|154586699 hsa-miR-939-5p 1 1 0
chr4:154586441|154586699 hsa-miR-3199 0 1 0
chr4:154586441|154586699 hsa-miR-365a-5p 1 0 0
chr4:154586441|154586699 hsa-miR-365b-5p 1 0 0
chr4:154586441|154586699 hsa-miR-3198 1 0 0
chr4:154586441|154586699 hsa-miR-10398-3p 1 0 0
chr4:154586441|154586699 hsa-miR-4646-5p 1 0 0
chr4:154586441|154586699 hsa-miR-378a-3p 0 1 0
chr4:154586441|154586699 hsa-miR-3184-5p 1 0 0
chr4:154586441|154586699 hsa-miR-5591-5p 0 1 0
chr4:154586441|154586699 hsa-miR-6791-5p 1 1 0
chr4:154586441|154586699 hsa-miR-449b-5p 1 0 0
chr4:154586441|154586699 hsa-miR-151a-5p 0 1 0
chr4:154586441|154586699 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr4:154586441|154586699
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MQSLQSQSSQGFGFQYFQVQSSQSSSFQHC
Nucleotide Sequence TTGCAGTCCCTCCAGTCCCAGAGCTCCCAGGGTTTCGGTTTCCAGTACTTCCAGGTCCAGAGCTCCCAGAGTTCCAGCTTCCAGCACTGCTAG

CircID chr4:154586441|154586699
ORF Type ORF2
Protein Length 76
Nucleotide Length 228
Protein Sequence MPQMRMELERPGGNEITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPG
Nucleotide Sequence ATGCCGCAGATGAGAATGGAGTTAGAGAGACCTGGTGGAAATGAGATTACTCGAGGAGGCTCCACCTCTTATGGAACCGGATCAGAGACGGAAAGCCCCAGGAACCCTAGCAGTGCTGGAAGCTGGAACTCTGGGAGCTCTGGACCTGGAAGTACTGGAAACCGAAACCCTGGGAGCTCTGGGACTGGAGGGACTGCAACCTGGAAACCTGGGAGCTCTGGACCTGGA

CircID chr4:154586441|154586699
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MVEMRLLEEAPPLMEPDQRRKAPGTLAVLEAGTLGALDLEVLETETLGALGLEGLQPGNLGALDLE
Nucleotide Sequence CTGGTGGAAATGAGATTACTCGAGGAGGCTCCACCTCTTATGGAACCGGATCAGAGACGGAAAGCCCCAGGAACCCTAGCAGTGCTGGAAGCTGGAACTCTGGGAGCTCTGGACCTGGAAGTACTGGAAACCGAAACCCTGGGAGCTCTGGGACTGGAGGGACTGCAACCTGGAAACCTGGGAGCTCTGGACCTGGAA

CircID chr4:154586441|154586699
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MELWELWTWKYWKPKPWELWDWRDCNLETWELWTW
Nucleotide Sequence CTGGAACTCTGGGAGCTCTGGACCTGGAAGTACTGGAAACCGAAACCCTGGGAGCTCTGGGACTGGAGGGACTGCAACCTGGAAACCTGGGAGCTCTGGACCTGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites