CircRNA Information

General Information
circRNA Basic Information
CircID chr4:168631250|168631471
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCAAGCTGGACGTTGATTTCTTTTATCAGTAATACAAATTCACTACTAGCTGCTTCTTGGATTTCCCCCCTTGAGAGCTGCAACGTTTCCTAAATGAACAGAGGTCTTTAGGGAATGCCTCAAACCACAGCTGAATGGGGAGTGGCTTTAGAAATCGCCGGTGGAACTTGCCTGTTACCTTCTTACAATTCCCCCCGCCCCTGGGCAACGCAAAAGCCGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:168631250|168631471 hsa-miR-325 0 0 1
chr4:168631250|168631471 hsa-miR-579-5p 0 0 1
chr4:168631250|168631471 hsa-miR-579-3p 0 0 1
chr4:168631250|168631471 hsa-miR-625-5p 0 0 1
chr4:168631250|168631471 hsa-miR-625-3p 0 0 1
chr4:168631250|168631471 hsa-miR-646 0 0 1
chr4:168631250|168631471 hsa-miR-651-5p 0 0 1
chr4:168631250|168631471 hsa-miR-651-3p 0 0 1
chr4:168631250|168631471 hsa-miR-1301-5p 0 0 1
chr4:168631250|168631471 hsa-miR-1301-3p 0 0 1
chr4:168631250|168631471 hsa-miR-1206 0 0 1
chr4:168631250|168631471 hsa-miR-1304-5p 0 0 1
chr4:168631250|168631471 hsa-miR-1304-3p 0 0 1
chr4:168631250|168631471 hsa-miR-513c-5p 0 0 1
chr4:168631250|168631471 hsa-miR-513c-3p 0 0 1
chr4:168631250|168631471 hsa-miR-1827 0 0 1
chr4:168631250|168631471 hsa-miR-1207-3p 0 0 1
chr4:168631250|168631471 hsa-miR-1244 0 1 1
chr4:168631250|168631471 hsa-miR-576-5p 0 0 1
chr4:168631250|168631471 hsa-miR-219-2-3p 0 0 1
chr4:168631250|168631471 hsa-miR-450a 0 0 1
chr4:168631250|168631471 hsa-miR-663 0 0 1
chr4:168631250|168631471 hsa-miR-194 0 0 1
chr4:168631250|168631471 hsa-miR-658 1 0 0
chr4:168631250|168631471 hsa-miR-940 1 0 0
chr4:168631250|168631471 hsa-miR-3141 1 0 0
chr4:168631250|168631471 hsa-miR-4488 1 0 0
chr4:168631250|168631471 hsa-miR-4496 0 1 0
chr4:168631250|168631471 hsa-miR-4651 1 0 0
chr4:168631250|168631471 hsa-miR-4660 1 1 0
chr4:168631250|168631471 hsa-miR-5695 0 1 0
chr4:168631250|168631471 hsa-miR-6085 1 0 0
chr4:168631250|168631471 hsa-miR-8053 0 1 0
chr4:168631250|168631471 hsa-miR-8060 1 0 0
chr4:168631250|168631471 hsa-miR-8072 1 0 0
chr4:168631250|168631471 hsa-miR-671-5p 1 0 0
chr4:168631250|168631471 hsa-miR-3150a-3p 1 0 0
chr4:168631250|168631471 hsa-miR-6721-5p 1 0 0
chr4:168631250|168631471 hsa-miR-3180-3p 1 0 0
chr4:168631250|168631471 hsa-miR-6782-5p 1 1 0
chr4:168631250|168631471 hsa-miR-1908-5p 1 0 0
chr4:168631250|168631471 hsa-miR-1228-5p 1 1 0
chr4:168631250|168631471 hsa-miR-194-5p 0 1 0
chr4:168631250|168631471 hsa-miR-6853-3p 0 1 0
chr4:168631250|168631471 hsa-miR-3179 0 1 0
chr4:168631250|168631471 hsa-miR-4763-3p 1 0 0
chr4:168631250|168631471 hsa-miR-6787-5p 1 1 0
chr4:168631250|168631471 hsa-miR-6812-5p 1 0 0
chr4:168631250|168631471 hsa-miR-6816-5p 1 1 0
chr4:168631250|168631471 hsa-miR-6743-5p 1 0 0
chr4:168631250|168631471 hsa-miR-6756-5p 1 0 0
chr4:168631250|168631471 hsa-miR-6813-5p 1 0 0
chr4:168631250|168631471 hsa-miR-7111-5p 1 0 0
chr4:168631250|168631471 hsa-miR-10396b-5p 1 0 0
chr4:168631250|168631471 hsa-miR-1237-5p 1 0 0
chr4:168631250|168631471 hsa-miR-328-5p 1 0 0
chr4:168631250|168631471 hsa-miR-4749-5p 1 0 0
chr4:168631250|168631471 hsa-miR-6795-5p 1 1 0
chr4:168631250|168631471 hsa-miR-6887-5p 1 1 0
chr4:168631250|168631471 hsa-miR-939-5p 1 0 0
chr4:168631250|168631471 hsa-miR-3173-3p 1 1 0
chr4:168631250|168631471 hsa-miR-6876-5p 1 1 0
chr4:168631250|168631471 hsa-miR-6791-5p 1 0 0
chr4:168631250|168631471 hsa-miR-3619-5p 1 0 0
chr4:168631250|168631471 hsa-miR-6764-5p 0 1 0
chr4:168631250|168631471 hsa-miR-5195-3p 1 0 0
chr4:168631250|168631471 hsa-miR-514b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:168631250|168631471
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MGSGFRNRRWNLPVTFLQFPPPLGNAKAV
Nucleotide Sequence ATGGGGAGTGGCTTTAGAAATCGCCGGTGGAACTTGCCTGTTACCTTCTTACAATTCCCCCCGCCCCTGGGCAACGCAAAAGCCGTC
CircID chr4:168631250|168631471
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MISFISNTNSLLAASWISPLESCNVS
Nucleotide Sequence TTGATTTCTTTTATCAGTAATACAAATTCACTACTAGCTGCTTCTTGGATTTCCCCCCTTGAGAGCTGCAACGTTTCCTAA
CircID chr4:168631250|168631471
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MPQTTAEWGVALEIAGGTCLLPSYNSPRPWATQKP
Nucleotide Sequence ATGCCTCAAACCACAGCTGAATGGGGAGTGGCTTTAGAAATCGCCGGTGGAACTTGCCTGTTACCTTCTTACAATTCCCCCCGCCCCTGGGCAACGCAAAAGCCG
CircID chr4:168631250|168631471
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MQLSRGEIQEAASSEFVLLIKEINVQLE
Nucleotide Sequence TTGCAGCTCTCAAGGGGGGAAATCCAAGAAGCAGCTAGTAGTGAATTTGTATTACTGATAAAAGAAATCAACGTCCAGCTTGAG
CircID chr4:168631250|168631471
ORF Type ORF5
Protein Length 60
Nucleotide Length 183
Protein Sequence MPRGGGNCKKVTGKFHRRFLKPLPIQLWFEAFPKDLCSFRKRCSSQGGKSKKQLVVNLYY
Nucleotide Sequence TTGCCCAGGGGCGGGGGGAATTGTAAGAAGGTAACAGGCAAGTTCCACCGGCGATTTCTAAAGCCACTCCCCATTCAGCTGTGGTTTGAGGCATTCCCTAAAGACCTCTGTTCATTTAGGAAACGTTGCAGCTCTCAAGGGGGGAAATCCAAGAAGCAGCTAGTAGTGAATTTGTATTACTGA
CircID chr4:168631250|168631471
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MRHSLKTSVHLGNVAALKGGNPRSS
Nucleotide Sequence TTGAGGCATTCCCTAAAGACCTCTGTTCATTTAGGAAACGTTGCAGCTCTCAAGGGGGGAAATCCAAGAAGCAGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab