CircRNA Information

General Information
circRNA Basic Information
CircID chr4:2247769|2248067
Strand +
CircType exon
Host Gene ENSG00000123933.13;
Algorism CIRI2;
Sequence CGTGTCTATAGAGAGCAGACAGAAGCAGAACAGAGCCCGGGGCTCCTGAGCCTCTGCGTGTGCCCTCCCAGCCCACACCAGTGCTCTCGGCCACTGAGCACCCAGACTCAGGCTTGGGTTCCCCAGCCTTATTGGAAGGCAGCTCCCGCATACCAGGATAACCCCCGCAAACCACATAGCAGACCCCCGCCATCCTCGCAGAGTGGGAGAGGCTGCAGCAAGGCTTTGCCTCTGCAGACCCCATCTTAGTGGCACGGTGCTTGGGCCTGTGTCCCCGGGTGGTGGAACCCTGTACCGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:2247769|2248067 hsa-miR-22-5p 0 0 1
chr4:2247769|2248067 hsa-miR-22-3p 0 0 1
chr4:2247769|2248067 hsa-miR-150-5p 0 0 1
chr4:2247769|2248067 hsa-miR-150-3p 0 0 1
chr4:2247769|2248067 hsa-miR-346 1 0 1
chr4:2247769|2248067 hsa-miR-558 0 0 1
chr4:2247769|2248067 hsa-miR-627-5p 0 0 1
chr4:2247769|2248067 hsa-miR-627-3p 0 0 1
chr4:2247769|2248067 hsa-miR-632 1 0 1
chr4:2247769|2248067 hsa-miR-744-5p 0 0 1
chr4:2247769|2248067 hsa-miR-744-3p 0 0 1
chr4:2247769|2248067 hsa-miR-760 0 0 1
chr4:2247769|2248067 hsa-miR-920 0 0 1
chr4:2247769|2248067 hsa-miR-924 0 0 1
chr4:2247769|2248067 hsa-miR-1227-5p 0 0 1
chr4:2247769|2248067 hsa-miR-1227-3p 0 0 1
chr4:2247769|2248067 hsa-miR-1205 0 0 1
chr4:2247769|2248067 hsa-miR-1225-3p 0 0 1
chr4:2247769|2248067 hsa-miR-532-3p 0 0 1
chr4:2247769|2248067 hsa-miR-615-5p 1 0 1
chr4:2247769|2248067 hsa-miR-299-3p 0 0 1
chr4:2247769|2248067 hsa-miR-1184 0 0 1
chr4:2247769|2248067 hsa-miR-767-3p 0 0 1
chr4:2247769|2248067 hsa-miR-220b 0 0 1
chr4:2247769|2248067 hsa-miR-24 0 0 1
chr4:2247769|2248067 hsa-miR-663 0 0 1
chr4:2247769|2248067 hsa-miR-608 1 0 0
chr4:2247769|2248067 hsa-miR-611 1 0 0
chr4:2247769|2248067 hsa-miR-637 1 0 0
chr4:2247769|2248067 hsa-miR-638 1 0 0
chr4:2247769|2248067 hsa-miR-661 1 0 0
chr4:2247769|2248067 hsa-miR-663a 1 0 0
chr4:2247769|2248067 hsa-miR-762 1 0 0
chr4:2247769|2248067 hsa-miR-1294 1 0 0
chr4:2247769|2248067 hsa-miR-1538 1 0 0
chr4:2247769|2248067 hsa-miR-3131 1 0 0
chr4:2247769|2248067 hsa-miR-4322 1 0 0
chr4:2247769|2248067 hsa-miR-4265 1 0 0
chr4:2247769|2248067 hsa-miR-3911 1 0 0
chr4:2247769|2248067 hsa-miR-4447 1 0 0
chr4:2247769|2248067 hsa-miR-4466 1 0 0
chr4:2247769|2248067 hsa-miR-4467 1 0 0
chr4:2247769|2248067 hsa-miR-4498 1 0 0
chr4:2247769|2248067 hsa-miR-1587 1 0 0
chr4:2247769|2248067 hsa-miR-3960 1 0 0
chr4:2247769|2248067 hsa-miR-4651 1 0 0
chr4:2247769|2248067 hsa-miR-4656 1 0 0
chr4:2247769|2248067 hsa-miR-4706 1 0 0
chr4:2247769|2248067 hsa-miR-4734 1 0 0
chr4:2247769|2248067 hsa-miR-4737 1 0 0
chr4:2247769|2248067 hsa-miR-4741 1 0 0
chr4:2247769|2248067 hsa-miR-5787 1 0 0
chr4:2247769|2248067 hsa-miR-6068 1 0 0
chr4:2247769|2248067 hsa-miR-8072 1 0 0
chr4:2247769|2248067 hsa-miR-154-5p 1 0 0
chr4:2247769|2248067 hsa-miR-92a-2-5p 1 0 0
chr4:2247769|2248067 hsa-miR-3663-3p 1 0 0
chr4:2247769|2248067 hsa-miR-3677-5p 1 0 0
chr4:2247769|2248067 hsa-miR-8069 1 0 0
chr4:2247769|2248067 hsa-miR-6776-5p 1 0 0
chr4:2247769|2248067 hsa-miR-7108-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6742-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6796-5p 1 0 0
chr4:2247769|2248067 hsa-miR-2467-3p 1 0 0
chr4:2247769|2248067 hsa-miR-6786-5p 1 0 0
chr4:2247769|2248067 hsa-miR-1226-5p 1 0 0
chr4:2247769|2248067 hsa-miR-1908-5p 1 0 0
chr4:2247769|2248067 hsa-miR-1228-5p 1 0 0
chr4:2247769|2248067 hsa-miR-296-3p 1 0 0
chr4:2247769|2248067 hsa-miR-6771-5p 1 0 0
chr4:2247769|2248067 hsa-miR-4787-5p 1 0 0
chr4:2247769|2248067 hsa-miR-149-3p 1 0 0
chr4:2247769|2248067 hsa-miR-193a-5p 1 0 0
chr4:2247769|2248067 hsa-miR-937-5p 1 0 0
chr4:2247769|2248067 hsa-miR-10400-5p 1 0 0
chr4:2247769|2248067 hsa-miR-1207-5p 1 0 0
chr4:2247769|2248067 hsa-miR-4763-3p 1 0 0
chr4:2247769|2248067 hsa-miR-6787-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6816-5p 1 0 0
chr4:2247769|2248067 hsa-miR-5001-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6752-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6756-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6769a-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6803-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6819-5p 1 0 0
chr4:2247769|2248067 hsa-miR-7110-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6722-3p 1 0 0
chr4:2247769|2248067 hsa-miR-6751-5p 1 0 0
chr4:2247769|2248067 hsa-miR-3620-5p 1 0 0
chr4:2247769|2248067 hsa-miR-10396a-5p 1 0 0
chr4:2247769|2248067 hsa-miR-10396b-5p 1 0 0
chr4:2247769|2248067 hsa-miR-328-5p 1 0 0
chr4:2247769|2248067 hsa-miR-4749-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6846-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6848-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6887-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6885-5p 1 0 0
chr4:2247769|2248067 hsa-miR-939-5p 1 0 0
chr4:2247769|2248067 hsa-miR-3940-5p 1 0 0
chr4:2247769|2248067 hsa-miR-4665-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6736-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6855-5p 1 0 0
chr4:2247769|2248067 hsa-miR-3679-5p 1 0 0
chr4:2247769|2248067 hsa-miR-4472 1 0 0
chr4:2247769|2248067 hsa-miR-323b-5p 1 0 0
chr4:2247769|2248067 hsa-miR-487a-5p 1 0 0
chr4:2247769|2248067 hsa-miR-494-5p 1 0 0
chr4:2247769|2248067 hsa-miR-6874-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:2247769|2248067
ORF Type ORF1
Protein Length 67
Nucleotide Length 204
Protein Sequence MSLCVCPPSPHQCSRPLSTQTQAWVPQPYWKAAPAYQDNPRKPHSRPPPSSQSGRGCSKALPLQTPS
Nucleotide Sequence CTGAGCCTCTGCGTGTGCCCTCCCAGCCCACACCAGTGCTCTCGGCCACTGAGCACCCAGACTCAGGCTTGGGTTCCCCAGCCTTATTGGAAGGCAGCTCCCGCATACCAGGATAACCCCCGCAAACCACATAGCAGACCCCCGCCATCCTCGCAGAGTGGGAGAGGCTGCAGCAAGGCTTTGCCTCTGCAGACCCCATCTTAG
CircID chr4:2247769|2248067
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MRVPSQPTPVLSATEHPDSGLGSPALLEGSSRIPG
Nucleotide Sequence CTGCGTGTGCCCTCCCAGCCCACACCAGTGCTCTCGGCCACTGAGCACCCAGACTCAGGCTTGGGTTCCCCAGCCTTATTGGAAGGCAGCTCCCGCATACCAGGATAA
CircID chr4:2247769|2248067
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MQQGFASADPILVARCLGLCPRVVEPCTG
Nucleotide Sequence CTGCAGCAAGGCTTTGCCTCTGCAGACCCCATCTTAGTGGCACGGTGCTTGGGCCTGTGTCCCCGGGTGGTGGAACCCTGTACCGGT
CircID chr4:2247769|2248067
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MLQPLPLCEDGGGLLCGLRGLSWYAGAAFQ
Nucleotide Sequence TTGCTGCAGCCTCTCCCACTCTGCGAGGATGGCGGGGGTCTGCTATGTGGTTTGCGGGGGTTATCCTGGTATGCGGGAGCTGCCTTCCAATAA
CircID chr4:2247769|2248067
ORF Type ORF5
Protein Length 81
Nucleotide Length 243
Protein Sequence MGSAEAKPCCSLSHSARMAGVCYVVCGGYPGMRELPSNKAGEPKPESGCSVAESTGVGWEGTRRGSGAPGSVLLLSALYRH
Nucleotide Sequence ATGGGGTCTGCAGAGGCAAAGCCTTGCTGCAGCCTCTCCCACTCTGCGAGGATGGCGGGGGTCTGCTATGTGGTTTGCGGGGGTTATCCTGGTATGCGGGAGCTGCCTTCCAATAAGGCTGGGGAACCCAAGCCTGAGTCTGGGTGCTCAGTGGCCGAGAGCACTGGTGTGGGCTGGGAGGGCACACGCAGAGGCTCAGGAGCCCCGGGCTCTGTTCTGCTTCTGTCTGCTCTCTATAGACAC
CircID chr4:2247769|2248067
ORF Type ORF6
Protein Length 79
Nucleotide Length 237
Protein Sequence MQRQSLAAASPTLRGWRGSAMWFAGVILVCGSCLPIRLGNPSLSLGAQWPRALVWAGRAHAEAQEPRALFCFCLLSIDT
Nucleotide Sequence CTGCAGAGGCAAAGCCTTGCTGCAGCCTCTCCCACTCTGCGAGGATGGCGGGGGTCTGCTATGTGGTTTGCGGGGGTTATCCTGGTATGCGGGAGCTGCCTTCCAATAAGGCTGGGGAACCCAAGCCTGAGTCTGGGTGCTCAGTGGCCGAGAGCACTGGTGTGGGCTGGGAGGGCACACGCAGAGGCTCAGGAGCCCCGGGCTCTGTTCTGCTTCTGTCTGCTCTCTATAGACACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab